Wall clock time and date at job start Wed Apr 1 2020 04:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86797 * 120.00123 * 2 1 4 4 H 1.48500 * 109.47396 * 239.99874 * 3 2 1 5 5 H 1.48499 * 109.47372 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47269 * 119.99656 * 3 2 1 7 7 C 1.38951 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00523 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00064 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99911 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00125 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47121 * 179.97438 * 12 10 9 14 14 C 1.47960 * 111.00263 * 169.99964 * 13 12 10 15 15 C 1.53936 * 86.18426 * 222.42042 * 14 13 12 16 16 N 1.46499 * 113.73585 * 138.07699 * 15 14 13 17 17 C 1.34777 * 119.99665 * 155.27733 * 16 15 14 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 15 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 15 20 20 H 1.08999 * 109.42979 * 299.99004 * 19 17 16 21 21 C 1.53029 * 109.42648 * 180.10008 * 19 17 16 22 22 C 1.53397 * 109.73986 * 168.14957 * 21 19 17 23 23 C 1.50952 * 108.17127 * 50.71524 * 22 21 19 24 24 N 1.30122 * 128.28042 * 163.14764 * 23 22 21 25 25 N 1.40317 * 108.12116 * 180.30498 * 24 23 22 26 26 H 0.96993 * 126.00629 * 179.97438 * 25 24 23 27 27 C 1.35199 * 107.99017 * 359.95269 * 25 24 23 28 28 C 1.34572 * 107.61949 * 359.96788 * 27 25 24 29 29 C 1.50885 * 128.32335 * 180.14081 * 28 27 25 30 30 C 1.47964 * 111.00201 * 70.63974 * 13 12 10 31 31 H 0.97002 * 120.00634 * 0.02562 * 1 2 3 32 32 H 0.96993 * 119.99987 * 359.97438 * 9 7 2 33 33 H 1.08993 * 109.46901 * 59.99502 * 12 10 9 34 34 H 1.08996 * 109.46866 * 299.99416 * 12 10 9 35 35 H 1.08995 * 113.75898 * 108.09843 * 14 13 12 36 36 H 1.09006 * 113.85327 * 336.74445 * 14 13 12 37 37 H 1.08997 * 113.72763 * 269.25691 * 15 14 13 38 38 H 0.97001 * 119.99790 * 334.99446 * 16 15 14 39 39 H 1.08998 * 109.42616 * 288.27384 * 21 19 17 40 40 H 1.08996 * 109.42516 * 48.11110 * 21 19 17 41 41 H 1.09004 * 109.74298 * 291.04091 * 22 21 19 42 42 H 1.08997 * 109.75056 * 170.40064 * 22 21 19 43 43 H 1.08002 * 126.18736 * 179.97438 * 27 25 24 44 44 H 1.08997 * 109.71854 * 43.76048 * 29 28 27 45 45 H 1.08994 * 109.75496 * 283.12296 * 29 28 27 46 46 H 1.09007 * 113.75391 * 23.26173 * 30 13 12 47 47 H 1.09002 * 113.75755 * 251.90320 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1017 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1982 -5.9795 0.0004 14 6 1.5091 -7.2666 0.2408 15 6 2.6864 -7.6050 1.1731 16 7 2.2815 -8.2543 2.4223 17 6 3.1530 -9.0380 3.0876 18 8 4.2708 -9.2098 2.6495 19 6 2.7385 -9.7010 4.3759 20 1 2.4613 -8.9381 5.1034 21 6 3.9061 -10.5254 4.9228 22 6 3.6043 -10.9592 6.3628 23 6 2.2342 -11.5924 6.3865 24 7 1.7128 -12.3515 7.3057 25 7 0.4203 -12.7104 6.8939 26 1 -0.1991 -13.2725 7.3850 27 6 0.1899 -12.1347 5.6925 28 6 1.2913 -11.4383 5.3566 29 6 1.5367 -10.6175 4.1145 30 6 2.8919 -6.0850 1.3031 31 1 -0.4851 0.8400 -0.0004 32 1 0.3534 -2.3906 0.0005 33 1 0.6167 -4.9209 -0.8885 34 1 0.6175 -4.9205 0.8914 35 1 1.4498 -7.9044 -0.6411 36 1 0.5547 -7.1657 0.7576 37 1 3.5075 -8.1192 0.6737 38 1 1.3875 -8.1168 2.7727 39 1 4.0494 -11.4083 4.3000 40 1 4.8136 -9.9219 4.9092 41 1 3.6190 -10.0897 7.0201 42 1 4.3496 -11.6826 6.6934 43 1 -0.7146 -12.2185 5.1082 44 1 0.6561 -10.0148 3.8921 45 1 1.7530 -11.2768 3.2740 46 1 2.3423 -5.6367 2.1308 47 1 3.9375 -5.7787 1.2699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714955609.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:37 Heat of formation + Delta-G solvation = 32.317373 kcal Electronic energy + Delta-G solvation = -29417.488532 eV Core-core repulsion = 25216.502795 eV Total energy + Delta-G solvation = -4200.985737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.88832 -40.54810 -39.32567 -37.68903 -36.37795 -34.21906 -33.80925 -32.60462 -31.28425 -30.87477 -29.96879 -28.89679 -26.01138 -25.62185 -25.01015 -23.83879 -22.54915 -21.43784 -20.53921 -20.05708 -19.21693 -19.12869 -18.06103 -17.90519 -17.24550 -16.56657 -16.15678 -15.80721 -15.32904 -15.21396 -15.00557 -14.65183 -14.33507 -14.12556 -14.08907 -13.85320 -13.71803 -13.32362 -13.19784 -13.07209 -12.86374 -12.55494 -12.29301 -12.20077 -11.98123 -11.73180 -11.53284 -11.38272 -11.22925 -11.20392 -11.04940 -10.71670 -10.57823 -10.44199 -10.21763 -9.89674 -9.77164 -9.50369 -9.12578 -8.84420 -8.70880 -8.25511 -7.97236 -6.42522 -3.83264 1.50240 2.32739 2.44570 2.50350 2.96641 3.19936 3.25535 3.30277 3.88017 3.98139 4.03404 4.19788 4.33661 4.42968 4.47460 4.53695 4.67833 4.84338 4.88283 4.97398 5.02950 5.06595 5.16257 5.20109 5.26936 5.30076 5.34715 5.45150 5.55399 5.57653 5.65771 5.66801 5.71782 5.78161 5.85472 5.96658 5.98790 6.19090 6.25656 6.27443 6.39854 6.59531 6.87838 7.13494 7.28430 7.35665 7.54409 8.04677 8.09725 8.60506 9.17219 9.52946 10.04875 10.75160 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.001741 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.108151 B =16077.323365 C =16315.093930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.577 6.577 12 C 0.013 3.987 13 N -0.449 5.449 14 C -0.009 4.009 15 C 0.114 3.886 16 N -0.720 5.720 17 C 0.520 3.480 18 O -0.534 6.534 19 C -0.105 4.105 20 H 0.101 0.899 21 C -0.097 4.097 22 C -0.040 4.040 23 C 0.085 3.915 24 N -0.290 5.290 25 N -0.486 5.486 26 H 0.439 0.561 27 C 0.064 3.936 28 C -0.236 4.236 29 C -0.029 4.029 30 C 0.010 3.990 31 H 0.272 0.728 32 H 0.392 0.608 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.124 0.876 38 H 0.399 0.601 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.177 0.823 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.858 -25.448 11.726 28.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.461 6.461 12 C -0.119 4.119 13 N -0.172 5.172 14 C -0.139 4.139 15 C 0.009 3.991 16 N -0.372 5.372 17 C 0.306 3.694 18 O -0.410 6.410 19 C -0.127 4.127 20 H 0.119 0.881 21 C -0.135 4.135 22 C -0.080 4.080 23 C -0.084 4.084 24 N -0.112 5.112 25 N -0.194 5.194 26 H 0.283 0.717 27 C -0.082 4.082 28 C -0.247 4.247 29 C -0.068 4.068 30 C -0.120 4.120 31 H 0.082 0.918 32 H 0.225 0.775 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.142 0.858 38 H 0.234 0.766 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.194 0.806 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.818 -25.836 11.906 28.587 hybrid contribution -2.085 1.099 0.330 2.380 sum -4.903 -24.737 12.236 28.030 Atomic orbital electron populations 1.69596 1.05928 1.28257 1.50625 1.25254 0.95642 0.99715 0.97321 0.85915 0.78763 0.80430 0.79109 1.19868 1.20985 1.19911 1.19656 0.93349 0.82214 1.47642 0.87970 1.41855 1.09136 1.04578 1.64542 1.19677 0.88401 0.84504 0.84666 1.90536 1.13607 1.86958 1.54974 1.22444 0.95004 0.92546 1.01885 1.68383 1.18243 0.99859 1.30719 1.24429 0.96173 0.93916 0.99364 1.23127 0.98550 0.93264 0.84157 1.46105 1.16545 1.49539 1.24984 1.20613 0.85038 0.78193 0.85582 1.90721 1.20372 1.61719 1.68198 1.21385 0.97373 0.98608 0.95325 0.88108 1.21394 0.97468 1.00340 0.94306 1.20202 0.89786 1.00031 0.97938 1.22442 0.97418 0.96441 0.92082 1.77036 0.92348 1.18913 1.22899 1.46343 1.13620 1.42656 1.16759 0.71705 1.22071 1.00170 0.96986 0.88952 1.19973 0.95054 1.09181 1.00536 1.19910 0.96564 0.96021 0.94256 1.24306 1.02761 0.93659 0.91264 0.91835 0.77530 0.89025 0.92848 0.88643 0.91095 0.85807 0.76621 0.90821 0.89575 0.89507 0.89482 0.80594 0.90607 0.90551 0.91344 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 9 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 10 C 0.44 10.41 7.59 -10.98 -0.08 10.33 16 11 O -0.58 -15.72 15.12 5.55 0.08 -15.64 16 12 C 0.01 0.23 5.31 -4.98 -0.03 0.20 16 13 N -0.45 -7.25 5.95 -239.87 -1.43 -8.68 16 14 C -0.01 -0.10 7.73 -2.77 -0.02 -0.12 16 15 C 0.11 1.37 4.43 -69.62 -0.31 1.06 16 16 N -0.72 -6.65 5.27 -54.94 -0.29 -6.94 16 17 C 0.52 5.46 7.14 -10.99 -0.08 5.38 16 18 O -0.53 -7.83 15.37 5.55 0.09 -7.75 16 19 C -0.11 -0.80 2.47 -91.56 -0.23 -1.03 16 20 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16 21 C -0.10 -0.77 4.64 -26.51 -0.12 -0.90 16 22 C -0.04 -0.30 6.31 -27.55 -0.17 -0.47 16 23 C 0.08 0.75 7.10 -82.35 -0.58 0.17 16 24 N -0.29 -2.80 12.68 33.75 0.43 -2.37 16 25 N -0.49 -3.15 7.37 30.35 0.22 -2.92 16 26 H 0.44 1.45 8.96 -182.44 -1.64 -0.18 16 27 C 0.06 0.37 11.95 -17.37 -0.21 0.16 16 28 C -0.24 -1.74 5.89 -104.98 -0.62 -2.35 16 29 C -0.03 -0.18 5.40 -27.59 -0.15 -0.33 16 30 C 0.01 0.15 6.56 -2.76 -0.02 0.14 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 33 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.05 0.80 7.69 -51.93 -0.40 0.40 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.64 7.77 -51.93 -0.40 0.23 16 37 H 0.12 1.68 7.46 -51.93 -0.39 1.30 16 38 H 0.40 2.58 8.37 -40.82 -0.34 2.23 16 39 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.09 0.76 7.68 -51.93 -0.40 0.36 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.18 0.38 8.06 -52.49 -0.42 -0.05 16 44 H 0.08 0.33 7.86 -51.93 -0.41 -0.08 16 45 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 46 H 0.07 1.03 7.78 -51.93 -0.40 0.63 16 47 H 0.10 1.81 8.09 -51.93 -0.42 1.39 16 LS Contribution 388.65 15.07 5.86 5.86 Total: -1.00 -36.29 388.65 -10.26 -46.55 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -8.01 Total: 9.56 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -2.86 Total: 4.25 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.40 Total: -58.87 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.17 Total: -23.39 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.29 -10.26 -46.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714955609.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.866 kcal (2) G-P(sol) polarization free energy of solvation -36.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds