Wall clock time and date at job start Wed Apr 1 2020 04:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86797 * 120.00123 * 2 1 4 4 H 1.48500 * 109.47396 * 239.99874 * 3 2 1 5 5 H 1.48499 * 109.47372 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47269 * 119.99656 * 3 2 1 7 7 C 1.38951 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00523 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00064 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99911 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00125 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47121 * 179.97438 * 12 10 9 14 14 C 1.47960 * 111.00263 * 169.99964 * 13 12 10 15 15 C 1.53936 * 86.18426 * 222.42042 * 14 13 12 16 16 N 1.46499 * 113.73585 * 138.07699 * 15 14 13 17 17 C 1.34777 * 119.99665 * 155.27733 * 16 15 14 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 15 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 15 20 20 H 1.08999 * 109.42979 * 299.99004 * 19 17 16 21 21 C 1.53029 * 109.42648 * 180.10008 * 19 17 16 22 22 C 1.53397 * 109.73986 * 168.14957 * 21 19 17 23 23 C 1.50952 * 108.17127 * 50.71524 * 22 21 19 24 24 N 1.30122 * 128.28042 * 163.14764 * 23 22 21 25 25 N 1.40317 * 108.12116 * 180.30498 * 24 23 22 26 26 H 0.96993 * 126.00629 * 179.97438 * 25 24 23 27 27 C 1.35199 * 107.99017 * 359.95269 * 25 24 23 28 28 C 1.34572 * 107.61949 * 359.96788 * 27 25 24 29 29 C 1.50885 * 128.32335 * 180.14081 * 28 27 25 30 30 C 1.47964 * 111.00201 * 70.63974 * 13 12 10 31 31 H 0.97002 * 120.00634 * 0.02562 * 1 2 3 32 32 H 0.96993 * 119.99987 * 359.97438 * 9 7 2 33 33 H 1.08993 * 109.46901 * 59.99502 * 12 10 9 34 34 H 1.08996 * 109.46866 * 299.99416 * 12 10 9 35 35 H 1.08995 * 113.75898 * 108.09843 * 14 13 12 36 36 H 1.09006 * 113.85327 * 336.74445 * 14 13 12 37 37 H 1.08997 * 113.72763 * 269.25691 * 15 14 13 38 38 H 0.97001 * 119.99790 * 334.99446 * 16 15 14 39 39 H 1.08998 * 109.42616 * 288.27384 * 21 19 17 40 40 H 1.08996 * 109.42516 * 48.11110 * 21 19 17 41 41 H 1.09004 * 109.74298 * 291.04091 * 22 21 19 42 42 H 1.08997 * 109.75056 * 170.40064 * 22 21 19 43 43 H 1.08002 * 126.18736 * 179.97438 * 27 25 24 44 44 H 1.08997 * 109.71854 * 43.76048 * 29 28 27 45 45 H 1.08994 * 109.75496 * 283.12296 * 29 28 27 46 46 H 1.09007 * 113.75391 * 23.26173 * 30 13 12 47 47 H 1.09002 * 113.75755 * 251.90320 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1017 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1982 -5.9795 0.0004 14 6 1.5091 -7.2666 0.2408 15 6 2.6864 -7.6050 1.1731 16 7 2.2815 -8.2543 2.4223 17 6 3.1530 -9.0380 3.0876 18 8 4.2708 -9.2098 2.6495 19 6 2.7385 -9.7010 4.3759 20 1 2.4613 -8.9381 5.1034 21 6 3.9061 -10.5254 4.9228 22 6 3.6043 -10.9592 6.3628 23 6 2.2342 -11.5924 6.3865 24 7 1.7128 -12.3515 7.3057 25 7 0.4203 -12.7104 6.8939 26 1 -0.1991 -13.2725 7.3850 27 6 0.1899 -12.1347 5.6925 28 6 1.2913 -11.4383 5.3566 29 6 1.5367 -10.6175 4.1145 30 6 2.8919 -6.0850 1.3031 31 1 -0.4851 0.8400 -0.0004 32 1 0.3534 -2.3906 0.0005 33 1 0.6167 -4.9209 -0.8885 34 1 0.6175 -4.9205 0.8914 35 1 1.4498 -7.9044 -0.6411 36 1 0.5547 -7.1657 0.7576 37 1 3.5075 -8.1192 0.6737 38 1 1.3875 -8.1168 2.7727 39 1 4.0494 -11.4083 4.3000 40 1 4.8136 -9.9219 4.9092 41 1 3.6190 -10.0897 7.0201 42 1 4.3496 -11.6826 6.6934 43 1 -0.7146 -12.2185 5.1082 44 1 0.6561 -10.0148 3.8921 45 1 1.7530 -11.2768 3.2740 46 1 2.3423 -5.6367 2.1308 47 1 3.9375 -5.7787 1.2699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714955609.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:36 Heat of formation + Delta-G solvation = 2.000177 kcal Electronic energy + Delta-G solvation = -29418.803185 eV Core-core repulsion = 25216.502795 eV Total energy + Delta-G solvation = -4202.300389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.41603 -41.58344 -40.44352 -39.37445 -37.05410 -35.96713 -35.04924 -33.31539 -33.15036 -31.44927 -31.13030 -29.63458 -27.30280 -27.04503 -25.73711 -25.08443 -23.43166 -21.93870 -21.40317 -21.17125 -20.80882 -19.88545 -19.72145 -18.53979 -18.04918 -17.87426 -17.57826 -16.58932 -16.56152 -16.42942 -16.03564 -15.91010 -15.63480 -15.41629 -15.06076 -14.83008 -14.66016 -14.39358 -14.10216 -13.72048 -13.70004 -13.61828 -13.51988 -13.48381 -13.13190 -12.88347 -12.82977 -12.71196 -12.44260 -12.30096 -12.13382 -11.98450 -11.83428 -11.74010 -11.49586 -11.25428 -10.79459 -10.33058 -10.32309 -10.06632 -10.00890 -9.69306 -9.32463 -8.46683 -5.95030 1.02638 1.39246 1.41336 1.51858 1.64655 1.80258 2.05060 2.05957 2.12332 2.29998 2.89416 3.20062 3.25951 3.43747 3.60320 3.75328 3.86667 3.89870 3.93744 4.11820 4.18587 4.30940 4.33944 4.40366 4.46376 4.47610 4.55930 4.57151 4.65698 4.74506 4.79881 4.84283 4.87766 5.01386 5.04622 5.08769 5.18547 5.27734 5.35449 5.38355 5.41489 5.51531 5.73273 5.89303 6.07726 6.53058 6.60106 6.61122 6.77073 7.13316 7.30986 7.56677 8.13408 8.70354 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.001741 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.108151 B =16077.323365 C =16315.093930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.990 3.010 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.334 4.334 8 H 0.075 0.925 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.622 6.622 12 C 0.027 3.973 13 N -0.483 5.483 14 C 0.011 3.989 15 C 0.130 3.870 16 N -0.704 5.704 17 C 0.520 3.480 18 O -0.581 6.581 19 C -0.097 4.097 20 H 0.114 0.886 21 C -0.092 4.092 22 C -0.036 4.036 23 C 0.068 3.932 24 N -0.331 5.331 25 N -0.481 5.481 26 H 0.451 0.549 27 C 0.079 3.921 28 C -0.257 4.257 29 C -0.020 4.020 30 C 0.004 3.996 31 H 0.278 0.722 32 H 0.397 0.603 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.418 0.582 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.217 0.783 44 H 0.103 0.897 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 -26.281 11.960 29.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.093 0.907 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.508 6.508 12 C -0.105 4.105 13 N -0.206 5.206 14 C -0.118 4.118 15 C 0.024 3.976 16 N -0.356 5.356 17 C 0.308 3.692 18 O -0.461 6.461 19 C -0.118 4.118 20 H 0.132 0.868 21 C -0.131 4.131 22 C -0.075 4.075 23 C -0.100 4.100 24 N -0.154 5.154 25 N -0.191 5.191 26 H 0.297 0.703 27 C -0.068 4.068 28 C -0.268 4.268 29 C -0.059 4.059 30 C -0.127 4.127 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.132 0.868 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.256 0.744 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.233 0.767 44 H 0.121 0.879 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.956 -26.692 12.163 29.931 hybrid contribution -1.120 1.288 0.270 1.728 sum -7.076 -25.404 12.433 29.155 Atomic orbital electron populations 1.69646 1.06671 1.29343 1.50238 1.25987 0.96567 1.02246 0.96316 0.85028 0.77818 0.76876 0.78856 1.19926 1.19299 1.19816 1.19590 0.92596 0.84150 1.50066 0.90657 1.41915 1.09302 1.04614 1.65223 1.20871 0.88289 0.86156 0.82250 1.90511 1.16003 1.87952 1.56320 1.22349 0.94609 0.89158 1.04336 1.68343 1.19531 1.01503 1.31224 1.24485 0.96615 0.90738 0.99949 1.22705 0.98842 0.90748 0.85344 1.45906 1.17242 1.48534 1.23930 1.21140 0.84313 0.77710 0.86074 1.90712 1.22494 1.63370 1.69484 1.21357 0.97818 0.98967 0.93647 0.86760 1.21306 0.97335 0.99737 0.94711 1.20154 0.89740 1.00262 0.97378 1.22662 0.97985 0.96596 0.92730 1.76959 0.94102 1.20190 1.24173 1.46414 1.12921 1.42518 1.17213 0.70282 1.22682 1.00801 0.95008 0.88270 1.20175 0.95423 1.10474 1.00751 1.19887 0.96554 0.95762 0.93659 1.24245 1.00450 0.96480 0.91499 0.91263 0.76883 0.86838 0.89695 0.86890 0.87543 0.87805 0.74396 0.91907 0.90995 0.88875 0.89489 0.76676 0.87856 0.90893 0.90889 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.98 13.05 21.66 0.28 -48.69 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 0.99 43.05 29.55 68.60 2.03 45.07 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 8 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 9 N -0.57 -29.15 5.29 -306.98 -1.62 -30.77 16 10 C 0.44 20.71 7.59 87.66 0.67 21.38 16 11 O -0.62 -35.11 15.12 -3.06 -0.05 -35.15 16 12 C 0.03 0.88 5.31 85.56 0.45 1.33 16 13 N -0.48 -14.91 5.95 -912.81 -5.43 -20.34 16 14 C 0.01 0.20 7.73 86.41 0.67 0.87 16 15 C 0.13 2.94 4.43 46.55 0.21 3.15 16 16 N -0.70 -11.40 5.27 -446.11 -2.35 -13.75 16 17 C 0.52 10.43 7.14 87.66 0.63 11.06 16 18 O -0.58 -17.46 15.37 -3.04 -0.05 -17.50 16 19 C -0.10 -1.33 2.47 -11.40 -0.03 -1.35 16 20 H 0.11 1.30 8.10 -2.39 -0.02 1.28 16 21 C -0.09 -1.49 4.64 30.74 0.14 -1.35 16 22 C -0.04 -0.53 6.31 30.06 0.19 -0.34 16 23 C 0.07 1.14 7.10 43.44 0.31 1.45 16 24 N -0.33 -6.13 12.68 -47.14 -0.60 -6.73 16 25 N -0.48 -5.25 7.37 -57.88 -0.43 -5.68 16 26 H 0.45 2.08 8.96 -213.19 -1.91 0.17 16 27 C 0.08 0.64 11.95 83.33 1.00 1.64 16 28 C -0.26 -3.17 5.89 -20.10 -0.12 -3.28 16 29 C -0.02 -0.19 5.40 30.04 0.16 -0.03 16 30 C 0.00 0.11 6.56 86.41 0.57 0.68 16 31 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 33 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.09 2.23 7.69 -2.39 -0.02 2.21 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.11 1.29 7.77 -2.38 -0.02 1.27 16 37 H 0.10 2.84 7.46 -2.39 -0.02 2.82 16 38 H 0.42 3.72 8.37 -92.71 -0.78 2.94 16 39 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 40 H 0.07 1.35 7.68 -2.39 -0.02 1.33 16 41 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.22 -0.15 8.06 -2.91 -0.02 -0.17 16 44 H 0.10 0.41 7.86 -2.39 -0.02 0.39 16 45 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 46 H 0.07 2.15 7.78 -2.38 -0.02 2.13 16 47 H 0.06 2.19 8.09 -2.39 -0.02 2.17 16 Total: -1.00 -83.01 388.65 -4.47 -87.48 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: -2.38 Total: 29.24 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 6.12 Total: 16.82 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -10.14 Total: -125.96 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -0.09 Total: -52.66 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -83.01 -4.47 -87.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714955609.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.483 kcal (2) G-P(sol) polarization free energy of solvation -83.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds