Wall clock time and date at job start Wed Apr 1 2020 04:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99994 * 2 1 4 4 H 1.48497 * 109.47604 * 270.00596 * 3 2 1 5 5 H 1.48502 * 109.46805 * 30.00618 * 3 2 1 6 6 H 1.48508 * 109.47041 * 150.00358 * 3 2 1 7 7 C 1.38809 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00311 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99884 * 174.61471 * 9 7 2 11 11 C 1.52999 * 110.01901 * 301.52779 * 10 9 7 12 12 N 1.46497 * 109.47254 * 303.90463 * 11 10 9 13 13 C 1.34783 * 120.00139 * 175.12731 * 12 11 10 14 14 O 1.21277 * 119.99969 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99915 * 179.97438 * 13 12 11 16 16 H 1.08999 * 109.09799 * 40.89145 * 15 13 12 17 17 C 1.53354 * 109.06863 * 281.80143 * 15 13 12 18 18 C 1.50667 * 107.87340 * 282.33120 * 17 15 13 19 19 C 1.33065 * 130.80670 * 152.97836 * 18 17 15 20 20 N 1.34734 * 108.03249 * 179.40491 * 19 18 17 21 21 C 1.30823 * 109.54507 * 0.02562 * 20 19 18 22 22 N 1.35050 * 108.32951 * 0.21865 * 21 20 19 23 23 C 1.34574 * 131.28861 * 179.17274 * 22 21 20 24 24 O 1.21494 * 120.69804 * 9.43284 * 23 22 21 25 25 N 1.34833 * 118.60595 * 189.40806 * 23 22 21 26 26 C 1.54259 * 110.03378 * 62.92086 * 10 9 7 27 27 C 1.54964 * 104.16231 * 95.75064 * 26 10 9 28 28 C 1.54895 * 102.77508 * 37.88995 * 27 26 10 29 29 C 1.53876 * 110.03101 * 180.13918 * 10 9 7 30 30 H 0.96997 * 119.99771 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99742 * 354.62656 * 9 7 2 32 32 H 1.09002 * 109.47287 * 183.90007 * 11 10 9 33 33 H 1.09007 * 109.47050 * 63.90210 * 11 10 9 34 34 H 0.97003 * 119.99993 * 355.12011 * 12 11 10 35 35 H 1.09010 * 109.78964 * 162.73057 * 17 15 13 36 36 H 1.09000 * 109.77108 * 41.92698 * 17 15 13 37 37 H 1.08006 * 125.98120 * 359.40009 * 19 18 17 38 38 H 1.07993 * 125.83528 * 180.25794 * 21 20 19 39 39 H 0.96995 * 118.55228 * 191.81511 * 25 23 22 40 40 H 1.08996 * 110.49054 * 214.40207 * 26 10 9 41 41 H 1.09002 * 110.48650 * 337.04776 * 26 10 9 42 42 H 1.08999 * 110.72324 * 279.58050 * 27 26 10 43 43 H 1.09000 * 110.92870 * 156.29739 * 27 26 10 44 44 H 1.09004 * 110.48479 * 203.40677 * 28 27 26 45 45 H 1.08999 * 110.48681 * 80.76143 * 28 27 26 46 46 H 1.08999 * 110.02938 * 359.95359 * 29 10 9 47 47 H 1.08999 * 110.03249 * 121.38043 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0532 -3.6539 -0.1202 11 6 2.8628 -3.6720 -1.4183 12 7 1.9693 -3.4340 -2.5545 13 6 2.4772 -3.3083 -3.7966 14 8 3.6741 -3.3918 -3.9736 15 6 1.5579 -3.0640 -4.9655 16 1 0.7873 -2.3519 -4.6703 17 6 0.8927 -4.3869 -5.3646 18 6 1.8980 -5.1929 -6.1454 19 6 2.0242 -6.5082 -6.3031 20 7 3.0803 -6.7321 -7.1092 21 6 3.6154 -5.5901 -7.4570 22 7 2.9119 -4.5961 -6.8732 23 6 3.0682 -3.2599 -6.9056 24 8 3.8580 -2.7463 -7.6727 25 7 2.3295 -2.5030 -6.0693 26 6 2.9911 -3.8408 1.0902 27 6 2.1733 -4.7177 2.0718 28 6 1.4376 -5.6975 1.1242 29 6 1.0656 -4.8337 -0.0986 30 1 -0.4850 0.8400 0.0004 31 1 0.3588 -2.3899 0.0785 32 1 3.3450 -4.6429 -1.5323 33 1 3.6225 -2.8910 -1.3836 34 1 1.0120 -3.3670 -2.4129 35 1 0.0181 -4.1879 -5.9842 36 1 0.5951 -4.9345 -4.4704 37 1 1.3909 -7.2638 -5.8621 38 1 4.4727 -5.4638 -8.1015 39 1 2.3099 -1.5432 -6.2078 40 1 3.9041 -4.3548 0.7897 41 1 3.2260 -2.8775 1.5431 42 1 1.4600 -4.1104 2.6289 43 1 2.8315 -5.2587 2.7516 44 1 0.5396 -6.0887 1.6024 45 1 2.0993 -6.5118 0.8289 46 1 0.0450 -4.4644 0.0018 47 1 1.1630 -5.4191 -1.0128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715300441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:33 Heat of formation + Delta-G solvation = 16.146460 kcal Electronic energy + Delta-G solvation = -31856.402832 eV Core-core repulsion = 27654.715872 eV Total energy + Delta-G solvation = -4201.686960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.21740 -40.09066 -39.24130 -38.33743 -36.20740 -34.27631 -33.47950 -33.20921 -32.08061 -30.78453 -29.23893 -28.35211 -27.74467 -25.27504 -24.43851 -23.95308 -23.16789 -21.66054 -21.00500 -20.18001 -19.25922 -18.85288 -18.28572 -17.42925 -17.15693 -17.01510 -16.32161 -16.07885 -15.60019 -15.12813 -14.91917 -14.76695 -14.65408 -14.24598 -14.06860 -13.86471 -13.79204 -13.42367 -13.03840 -12.99011 -12.82406 -12.67782 -12.42469 -11.92954 -11.54812 -11.22485 -11.02129 -10.87765 -10.82030 -10.73297 -10.60384 -10.42665 -10.37461 -10.35201 -10.33923 -10.21611 -9.96425 -9.75760 -9.28679 -9.01435 -8.79613 -8.62505 -7.12811 -5.92191 -3.21343 1.01291 2.04132 2.66592 2.74237 2.87638 3.09424 3.33483 3.40824 3.41954 3.47484 4.16026 4.27686 4.45798 4.46821 4.57746 4.76650 4.89289 5.01238 5.03832 5.10832 5.14284 5.18686 5.28711 5.45133 5.56951 5.62828 5.66295 5.84093 5.85689 6.00016 6.07750 6.12602 6.16397 6.21692 6.32911 6.42155 6.45510 6.47296 6.48472 6.67703 6.72461 6.83907 6.91667 6.96430 7.55246 7.60743 7.78542 7.84997 8.26522 8.43368 9.38863 9.91730 10.27310 11.29519 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.003780 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.319934 B = 7405.174182 C = 9140.165034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.006 4.006 3 Si 0.900 3.100 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.710 5.710 10 C 0.189 3.811 11 C 0.121 3.879 12 N -0.690 5.690 13 C 0.492 3.508 14 O -0.539 6.539 15 C 0.117 3.883 16 H 0.134 0.866 17 C -0.051 4.051 18 C -0.031 4.031 19 C 0.008 3.992 20 N -0.484 5.484 21 C 0.253 3.747 22 N -0.453 5.453 23 C 0.736 3.264 24 O -0.534 6.534 25 N -0.700 5.700 26 C -0.132 4.132 27 C -0.117 4.117 28 C -0.121 4.121 29 C -0.125 4.125 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.403 0.597 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.180 0.820 38 H 0.218 0.782 39 H 0.426 0.574 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -11.899 -7.453 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.731 3.269 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.352 5.352 10 C 0.097 3.903 11 C -0.005 4.005 12 N -0.340 5.340 13 C 0.275 3.725 14 O -0.416 6.416 15 C 0.007 3.993 16 H 0.151 0.849 17 C -0.090 4.090 18 C -0.138 4.138 19 C -0.134 4.134 20 N -0.202 5.202 21 C -0.030 4.030 22 N -0.157 5.157 23 C 0.437 3.563 24 O -0.405 6.405 25 N -0.356 5.356 26 C -0.172 4.172 27 C -0.155 4.155 28 C -0.159 4.159 29 C -0.163 4.163 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.238 0.762 35 H 0.124 0.876 36 H 0.134 0.866 37 H 0.197 0.803 38 H 0.235 0.765 39 H 0.265 0.735 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.877 -12.346 -8.224 14.860 hybrid contribution -0.465 2.375 0.475 2.466 sum -1.342 -9.971 -7.749 12.699 Atomic orbital electron populations 1.69639 1.04957 1.25682 1.57614 1.24657 0.95395 0.97431 1.02783 0.86309 0.78872 0.84175 0.77543 1.21839 1.21808 1.20780 1.19079 0.91003 0.83829 1.42562 0.91338 1.42549 1.05956 0.99407 1.87283 1.20461 0.91339 0.87250 0.91270 1.21921 0.93134 0.99636 0.85810 1.45661 1.11560 1.70949 1.05857 1.20693 0.89353 0.77880 0.84595 1.90716 1.15547 1.50403 1.84959 1.21119 0.93889 0.98240 0.86005 0.84868 1.20562 0.95519 0.92178 1.00778 1.21369 0.95313 0.94465 1.02660 1.21858 0.97789 0.93154 1.00640 1.70763 1.09695 1.24755 1.14949 1.25304 0.98682 0.80405 0.98581 1.43793 1.25722 1.07061 1.39138 1.15553 0.80218 0.79765 0.80782 1.91013 1.35781 1.71808 1.41940 1.44677 1.50101 1.11240 1.29554 1.22833 0.97306 1.00327 0.96743 1.22396 0.98782 0.97064 0.97242 1.22302 0.99640 0.97633 0.96280 1.22429 0.99799 0.96258 0.97836 0.93536 0.78092 0.93043 0.91432 0.76180 0.87620 0.86578 0.80268 0.76545 0.73487 0.92964 0.90279 0.91403 0.92701 0.92294 0.92261 0.91210 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.02 13.06 55.49 0.72 -24.30 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.90 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -5.64 8.39 -15.06 -0.13 -5.77 16 8 H 0.07 1.70 7.22 -52.49 -0.38 1.32 16 9 N -0.71 -14.50 4.76 -46.20 -0.22 -14.71 16 10 C 0.19 3.08 0.68 -130.70 -0.09 2.99 16 11 C 0.12 2.01 3.99 -4.04 -0.02 2.00 16 12 N -0.69 -10.13 5.10 -60.29 -0.31 -10.43 16 13 C 0.49 7.46 6.72 -10.98 -0.07 7.39 16 14 O -0.54 -10.58 16.02 5.56 0.09 -10.49 16 15 C 0.12 1.26 3.55 -69.23 -0.25 1.02 16 16 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 17 C -0.05 -0.42 5.98 -27.72 -0.17 -0.59 16 18 C -0.03 -0.35 6.38 -81.47 -0.52 -0.87 16 19 C 0.01 0.09 11.83 -18.08 -0.21 -0.13 16 20 N -0.48 -6.41 11.27 -14.82 -0.17 -6.57 16 21 C 0.25 3.26 12.54 -90.10 -1.13 2.13 16 22 N -0.45 -6.13 2.85 -64.88 -0.19 -6.32 16 23 C 0.74 10.85 7.93 -87.05 -0.69 10.16 16 24 O -0.53 -9.22 17.75 5.37 0.10 -9.12 16 25 N -0.70 -8.61 4.82 -60.08 -0.29 -8.90 16 26 C -0.13 -2.12 5.95 -25.04 -0.15 -2.27 16 27 C -0.12 -1.63 6.91 -24.69 -0.17 -1.80 16 28 C -0.12 -1.47 6.83 -25.07 -0.17 -1.65 16 29 C -0.13 -1.65 5.80 -25.61 -0.15 -1.80 16 30 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.38 8.41 7.28 -40.82 -0.30 8.11 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.35 7.48 -51.92 -0.39 0.96 16 34 H 0.40 5.33 7.99 -40.82 -0.33 5.01 16 35 H 0.11 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.12 0.76 8.01 -51.93 -0.42 0.34 16 37 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.22 2.20 8.06 -52.49 -0.42 1.77 16 39 H 0.43 4.61 8.90 -40.82 -0.36 4.24 16 40 H 0.05 0.78 7.85 -51.93 -0.41 0.37 16 41 H 0.08 1.48 7.12 -51.93 -0.37 1.11 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.95 7.44 -51.93 -0.39 0.56 16 47 H 0.06 0.72 7.54 -51.93 -0.39 0.33 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -33.30 383.75 -10.17 -43.47 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -6.67 Total: 14.90 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: -4.00 Total: 10.53 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -0.44 Total: -71.24 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.18 Total: -19.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.30 -10.17 -43.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715300441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.615 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds