Wall clock time and date at job start Wed Apr 1 2020 04:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99994 * 2 1 4 4 H 1.48497 * 109.47604 * 270.00596 * 3 2 1 5 5 H 1.48502 * 109.46805 * 30.00618 * 3 2 1 6 6 H 1.48508 * 109.47041 * 150.00358 * 3 2 1 7 7 C 1.38809 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00311 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99884 * 174.61471 * 9 7 2 11 11 C 1.52999 * 110.01901 * 301.52779 * 10 9 7 12 12 N 1.46497 * 109.47254 * 303.90463 * 11 10 9 13 13 C 1.34783 * 120.00139 * 175.12731 * 12 11 10 14 14 O 1.21277 * 119.99969 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99915 * 179.97438 * 13 12 11 16 16 H 1.08999 * 109.09799 * 40.89145 * 15 13 12 17 17 C 1.53354 * 109.06863 * 281.80143 * 15 13 12 18 18 C 1.50667 * 107.87340 * 282.33120 * 17 15 13 19 19 C 1.33065 * 130.80670 * 152.97836 * 18 17 15 20 20 N 1.34734 * 108.03249 * 179.40491 * 19 18 17 21 21 C 1.30823 * 109.54507 * 0.02562 * 20 19 18 22 22 N 1.35050 * 108.32951 * 0.21865 * 21 20 19 23 23 C 1.34574 * 131.28861 * 179.17274 * 22 21 20 24 24 O 1.21494 * 120.69804 * 9.43284 * 23 22 21 25 25 N 1.34833 * 118.60595 * 189.40806 * 23 22 21 26 26 C 1.54259 * 110.03378 * 62.92086 * 10 9 7 27 27 C 1.54964 * 104.16231 * 95.75064 * 26 10 9 28 28 C 1.54895 * 102.77508 * 37.88995 * 27 26 10 29 29 C 1.53876 * 110.03101 * 180.13918 * 10 9 7 30 30 H 0.96997 * 119.99771 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99742 * 354.62656 * 9 7 2 32 32 H 1.09002 * 109.47287 * 183.90007 * 11 10 9 33 33 H 1.09007 * 109.47050 * 63.90210 * 11 10 9 34 34 H 0.97003 * 119.99993 * 355.12011 * 12 11 10 35 35 H 1.09010 * 109.78964 * 162.73057 * 17 15 13 36 36 H 1.09000 * 109.77108 * 41.92698 * 17 15 13 37 37 H 1.08006 * 125.98120 * 359.40009 * 19 18 17 38 38 H 1.07993 * 125.83528 * 180.25794 * 21 20 19 39 39 H 0.96995 * 118.55228 * 191.81511 * 25 23 22 40 40 H 1.08996 * 110.49054 * 214.40207 * 26 10 9 41 41 H 1.09002 * 110.48650 * 337.04776 * 26 10 9 42 42 H 1.08999 * 110.72324 * 279.58050 * 27 26 10 43 43 H 1.09000 * 110.92870 * 156.29739 * 27 26 10 44 44 H 1.09004 * 110.48479 * 203.40677 * 28 27 26 45 45 H 1.08999 * 110.48681 * 80.76143 * 28 27 26 46 46 H 1.08999 * 110.02938 * 359.95359 * 29 10 9 47 47 H 1.08999 * 110.03249 * 121.38043 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0532 -3.6539 -0.1202 11 6 2.8628 -3.6720 -1.4183 12 7 1.9693 -3.4340 -2.5545 13 6 2.4772 -3.3083 -3.7966 14 8 3.6741 -3.3918 -3.9736 15 6 1.5579 -3.0640 -4.9655 16 1 0.7873 -2.3519 -4.6703 17 6 0.8927 -4.3869 -5.3646 18 6 1.8980 -5.1929 -6.1454 19 6 2.0242 -6.5082 -6.3031 20 7 3.0803 -6.7321 -7.1092 21 6 3.6154 -5.5901 -7.4570 22 7 2.9119 -4.5961 -6.8732 23 6 3.0682 -3.2599 -6.9056 24 8 3.8580 -2.7463 -7.6727 25 7 2.3295 -2.5030 -6.0693 26 6 2.9911 -3.8408 1.0902 27 6 2.1733 -4.7177 2.0718 28 6 1.4376 -5.6975 1.1242 29 6 1.0656 -4.8337 -0.0986 30 1 -0.4850 0.8400 0.0004 31 1 0.3588 -2.3899 0.0785 32 1 3.3450 -4.6429 -1.5323 33 1 3.6225 -2.8910 -1.3836 34 1 1.0120 -3.3670 -2.4129 35 1 0.0181 -4.1879 -5.9842 36 1 0.5951 -4.9345 -4.4704 37 1 1.3909 -7.2638 -5.8621 38 1 4.4727 -5.4638 -8.1015 39 1 2.3099 -1.5432 -6.2078 40 1 3.9041 -4.3548 0.7897 41 1 3.2260 -2.8775 1.5431 42 1 1.4600 -4.1104 2.6289 43 1 2.8315 -5.2587 2.7516 44 1 0.5396 -6.0887 1.6024 45 1 2.0993 -6.5118 0.8289 46 1 0.0450 -4.4644 0.0018 47 1 1.1630 -5.4191 -1.0128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715300441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:32 Heat of formation + Delta-G solvation = -7.103285 kcal Electronic energy + Delta-G solvation = -31857.411017 eV Core-core repulsion = 27654.715872 eV Total energy + Delta-G solvation = -4202.695145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.15652 -41.23245 -40.40564 -39.59739 -37.27538 -35.58439 -35.15393 -34.20030 -33.01040 -32.35720 -30.35157 -29.51690 -29.04714 -26.47212 -25.61412 -25.21862 -24.48475 -22.56773 -22.16485 -21.32338 -20.38124 -19.97772 -19.44827 -18.88837 -18.43928 -18.14185 -17.44699 -17.26333 -16.87679 -16.29184 -16.09769 -15.99309 -15.73618 -15.60607 -15.17354 -15.13585 -15.04138 -14.63718 -14.25736 -14.08306 -13.82917 -13.71086 -13.45876 -13.22584 -13.17408 -12.93538 -12.46522 -12.35669 -12.15602 -12.10334 -11.84622 -11.71001 -11.57721 -11.55828 -11.36817 -11.35786 -11.34701 -11.27050 -10.89602 -10.37035 -9.96297 -9.63661 -8.92087 -7.90208 -5.14242 0.04018 1.05849 1.42553 1.47616 1.51256 1.57745 1.73304 1.92240 2.12503 2.38736 2.56941 3.37477 3.40911 3.43785 3.61618 3.69826 3.80152 3.82408 3.90025 3.99841 4.09192 4.17711 4.27423 4.46876 4.50675 4.60477 4.69035 4.70461 4.79079 4.84225 4.90606 4.99380 5.08083 5.17303 5.22472 5.28250 5.31080 5.43162 5.47065 5.49163 5.57650 5.59757 5.64610 5.68307 5.93684 6.34426 6.56336 6.65475 6.83208 7.26133 7.42976 8.15939 8.41874 9.31498 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.003780 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.319934 B = 7405.174182 C = 9140.165034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.054 4.054 3 Si 0.940 3.060 4 H -0.296 1.296 5 H -0.297 1.297 6 H -0.285 1.285 7 C -0.212 4.212 8 H 0.056 0.944 9 N -0.710 5.710 10 C 0.186 3.814 11 C 0.130 3.870 12 N -0.683 5.683 13 C 0.487 3.513 14 O -0.589 6.589 15 C 0.121 3.879 16 H 0.167 0.833 17 C -0.045 4.045 18 C -0.037 4.037 19 C -0.001 4.001 20 N -0.501 5.501 21 C 0.233 3.767 22 N -0.462 5.462 23 C 0.731 3.269 24 O -0.571 6.571 25 N -0.694 5.694 26 C -0.135 4.135 27 C -0.114 4.114 28 C -0.113 4.113 29 C -0.117 4.117 30 H 0.248 0.752 31 H 0.379 0.621 32 H 0.062 0.938 33 H 0.026 0.974 34 H 0.413 0.587 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.211 0.789 38 H 0.230 0.770 39 H 0.431 0.569 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 -13.971 -7.238 16.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.248 4.248 3 Si 0.772 3.228 4 H -0.223 1.223 5 H -0.224 1.224 6 H -0.211 1.211 7 C -0.345 4.345 8 H 0.074 0.926 9 N -0.351 5.351 10 C 0.095 3.905 11 C 0.003 3.997 12 N -0.333 5.333 13 C 0.272 3.728 14 O -0.470 6.470 15 C 0.012 3.988 16 H 0.185 0.815 17 C -0.083 4.083 18 C -0.143 4.143 19 C -0.142 4.142 20 N -0.218 5.218 21 C -0.049 4.049 22 N -0.167 5.167 23 C 0.432 3.568 24 O -0.446 6.446 25 N -0.349 5.349 26 C -0.175 4.175 27 C -0.152 4.152 28 C -0.151 4.151 29 C -0.155 4.155 30 H 0.058 0.942 31 H 0.213 0.787 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.250 0.750 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.228 0.772 38 H 0.246 0.754 39 H 0.271 0.729 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.729 -14.458 -7.981 16.738 hybrid contribution 0.201 2.944 0.471 2.988 sum -2.528 -11.514 -7.510 13.977 Atomic orbital electron populations 1.69711 1.05466 1.25397 1.59857 1.25045 0.95942 0.99170 1.04594 0.85656 0.77864 0.82314 0.76948 1.22339 1.22394 1.21054 1.19136 0.90528 0.85205 1.39615 0.92606 1.42575 1.05668 0.99842 1.86983 1.20687 0.92009 0.86789 0.90966 1.21699 0.92658 0.98647 0.86661 1.45592 1.11753 1.70534 1.05396 1.21519 0.89309 0.76427 0.85528 1.90704 1.18017 1.52513 1.85722 1.21366 0.93061 1.00736 0.83607 0.81534 1.20826 0.95301 0.90152 1.02052 1.21976 0.95187 0.94864 1.02276 1.22420 0.97540 0.93974 1.00294 1.70766 1.10572 1.24910 1.15596 1.25693 0.99455 0.80510 0.99257 1.43880 1.26520 1.06648 1.39675 1.15774 0.80004 0.80298 0.80700 1.90974 1.37408 1.72634 1.43569 1.44739 1.49539 1.11504 1.29143 1.22810 0.98278 0.99294 0.97118 1.22368 0.98526 0.97027 0.97279 1.22298 1.00479 0.97253 0.95058 1.22376 0.98527 0.94986 0.99638 0.94242 0.78688 0.91986 0.95586 0.74961 0.83976 0.83970 0.77228 0.75405 0.72938 0.91828 0.93787 0.93149 0.90916 0.90576 0.90490 0.91204 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -51.17 13.06 21.65 0.28 -50.89 16 2 C -0.05 -2.80 5.50 84.86 0.47 -2.33 16 3 Si 0.94 44.00 29.55 68.60 2.03 46.02 16 4 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.21 -10.30 8.39 84.03 0.70 -9.60 16 8 H 0.06 2.84 7.22 -2.91 -0.02 2.81 16 9 N -0.71 -28.46 4.76 -300.08 -1.43 -29.89 16 10 C 0.19 5.79 0.68 4.33 0.00 5.79 16 11 C 0.13 4.19 3.99 86.38 0.34 4.53 16 12 N -0.68 -18.66 5.10 -463.06 -2.36 -21.03 16 13 C 0.49 13.99 6.72 87.66 0.59 14.57 16 14 O -0.59 -23.05 16.02 -3.02 -0.05 -23.09 16 15 C 0.12 2.28 3.55 44.48 0.16 2.43 16 16 H 0.17 2.09 8.14 -2.39 -0.02 2.07 16 17 C -0.04 -0.56 5.98 29.96 0.18 -0.38 16 18 C -0.04 -0.75 6.38 40.36 0.26 -0.49 16 19 C 0.00 -0.03 11.83 83.09 0.98 0.96 16 20 N -0.50 -12.73 11.27 -200.81 -2.26 -14.99 16 21 C 0.23 5.97 12.54 180.17 2.26 8.23 16 22 N -0.46 -12.16 2.85 -477.59 -1.36 -13.52 16 23 C 0.73 21.38 7.93 179.10 1.42 22.80 16 24 O -0.57 -20.21 17.75 -3.70 -0.07 -20.28 16 25 N -0.69 -16.21 4.82 -462.26 -2.23 -18.44 16 26 C -0.13 -4.22 5.95 31.69 0.19 -4.03 16 27 C -0.11 -2.93 6.91 31.91 0.22 -2.71 16 28 C -0.11 -2.32 6.83 31.67 0.22 -2.10 16 29 C -0.12 -2.70 5.80 31.32 0.18 -2.51 16 30 H 0.25 13.29 8.31 -92.71 -0.77 12.52 16 31 H 0.38 16.17 7.28 -92.71 -0.67 15.50 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.03 1.05 7.48 -2.38 -0.02 1.03 16 34 H 0.41 9.69 7.99 -92.71 -0.74 8.95 16 35 H 0.14 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.14 1.09 8.01 -2.39 -0.02 1.07 16 37 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.23 4.81 8.06 -2.91 -0.02 4.79 16 39 H 0.43 8.94 8.90 -92.71 -0.83 8.11 16 40 H 0.06 1.83 7.85 -2.39 -0.02 1.81 16 41 H 0.04 1.67 7.12 -2.39 -0.02 1.65 16 42 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.07 1.66 7.44 -2.39 -0.02 1.64 16 47 H 0.08 1.58 7.54 -2.39 -0.02 1.56 16 Total: -1.00 -75.02 383.75 -0.48 -75.50 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: -1.20 Total: 35.44 kcal Atomic # 6 Polarization: 26.99 SS G_CDS: 8.17 Total: 35.16 kcal Atomic # 7 Polarization: -139.40 SS G_CDS: -9.36 Total: -148.76 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.11 Total: -43.37 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -75.02 -0.48 -75.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715300441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.398 kcal (2) G-P(sol) polarization free energy of solvation -75.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds