Wall clock time and date at job start Wed Apr 1 2020 05:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00407 * 2 1 4 4 H 1.48499 * 109.47419 * 240.00073 * 3 2 1 5 5 H 1.48501 * 109.46800 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46896 * 119.99863 * 3 2 1 7 7 C 1.38951 * 119.99541 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99838 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00457 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00002 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00163 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99594 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47090 * 179.97438 * 12 10 9 14 14 C 1.47627 * 110.99915 * 290.24858 * 13 12 10 15 15 C 1.54715 * 107.20396 * 234.43090 * 14 13 12 16 16 C 1.54182 * 102.14449 * 338.37584 * 15 14 13 17 17 H 1.09007 * 109.49833 * 281.62451 * 16 15 14 18 18 C 1.51400 * 112.92882 * 160.31951 * 16 15 14 19 19 N 1.46709 * 110.87222 * 290.07992 * 18 16 15 20 20 C 1.34777 * 121.36038 * 127.72401 * 19 18 16 21 21 O 1.21606 * 119.99772 * 3.50394 * 20 19 18 22 22 C 1.47422 * 120.00040 * 183.50251 * 20 19 18 23 23 C 1.41289 * 126.41752 * 316.51084 * 22 20 19 24 24 N 1.30449 * 108.02611 * 180.02562 * 23 22 20 25 25 N 1.39935 * 108.89597 * 359.78224 * 24 23 22 26 26 H 0.96999 * 125.75630 * 180.23263 * 25 24 23 27 27 C 1.34262 * 108.49025 * 0.36944 * 25 24 23 28 28 C 1.47217 * 117.28154 * 307.45067 * 19 18 16 29 29 C 1.52754 * 107.76230 * 58.34959 * 28 19 18 30 30 C 1.49039 * 110.99950 * 170.00068 * 13 12 10 31 31 H 1.09002 * 112.47517 * 270.22113 * 30 13 12 32 32 H 0.96998 * 119.99751 * 0.02562 * 1 2 3 33 33 H 0.96997 * 119.99756 * 359.97438 * 9 7 2 34 34 H 1.08997 * 109.47576 * 59.99720 * 12 10 9 35 35 H 1.09007 * 109.47297 * 299.99876 * 12 10 9 36 36 H 1.09000 * 109.89145 * 115.03025 * 14 13 12 37 37 H 1.09000 * 110.03629 * 353.90533 * 14 13 12 38 38 H 1.09006 * 110.86786 * 220.21603 * 15 14 13 39 39 H 1.08996 * 111.04866 * 96.61866 * 15 14 13 40 40 H 1.09009 * 109.32843 * 169.69640 * 18 16 15 41 41 H 1.09006 * 109.22576 * 50.39256 * 18 16 15 42 42 H 1.08005 * 125.98945 * 0.02562 * 23 22 20 43 43 H 1.08001 * 126.29172 * 179.89703 * 27 25 24 44 44 H 1.09005 * 109.79963 * 177.90936 * 28 19 18 45 45 H 1.08996 * 109.80384 * 298.72355 * 28 19 18 46 46 H 1.09000 * 109.20513 * 62.47404 * 29 28 19 47 47 H 1.08998 * 109.20231 * 181.82076 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0011 12 6 1.2436 -4.8629 -0.0022 13 7 2.1981 -5.9796 -0.0027 14 6 2.9045 -6.0712 -1.2958 15 6 2.7065 -7.5118 -1.8243 16 6 2.3696 -8.2869 -0.5347 17 1 3.2860 -8.4820 0.0224 18 6 1.6741 -9.6046 -0.8033 19 7 0.3120 -9.3846 -1.3017 20 6 -0.1222 -9.9672 -2.4369 21 8 0.5980 -10.7423 -3.0364 22 6 -1.4701 -9.6649 -2.9517 23 6 -2.6581 -9.5777 -2.1919 24 7 -3.6376 -9.2938 -3.0053 25 7 -3.1299 -9.1823 -4.3045 26 1 -3.6462 -8.9744 -5.0989 27 6 -1.8081 -9.4147 -4.2665 28 6 -0.5634 -8.5065 -0.5081 29 6 0.1179 -7.1435 -0.4003 30 6 1.5036 -7.2761 0.2383 31 1 1.4390 -7.5235 1.2979 32 1 -0.4850 0.8400 -0.0004 33 1 0.3533 -2.3907 -0.0016 34 1 0.6172 -4.9205 -0.8923 35 1 0.6165 -4.9209 0.8876 36 1 3.9664 -5.8710 -1.1533 37 1 2.4839 -5.3558 -2.0025 38 1 3.6241 -7.8893 -2.2757 39 1 1.8795 -7.5587 -2.5327 40 1 1.6282 -10.1830 0.1195 41 1 2.2409 -10.1646 -1.5472 42 1 -2.7408 -9.7211 -1.1246 43 1 -1.1326 -9.4034 -5.1091 44 1 -1.5274 -8.3990 -1.0054 45 1 -0.7061 -8.9286 0.4866 46 1 0.2221 -6.7149 -1.3971 47 1 -0.4964 -6.4830 0.2115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716033336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:08 Heat of formation + Delta-G solvation = 33.065205 kcal Electronic energy + Delta-G solvation = -31177.512293 eV Core-core repulsion = 26976.558985 eV Total energy + Delta-G solvation = -4200.953309 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.82882 -40.70075 -38.98902 -37.77976 -35.73653 -33.89534 -33.12267 -32.13250 -31.19376 -31.12440 -30.50448 -28.98741 -26.94058 -25.25548 -24.20960 -23.61071 -22.61207 -22.15671 -20.86219 -20.15265 -19.07132 -18.91111 -18.41419 -17.78122 -16.81393 -16.23666 -16.01270 -15.85622 -15.38980 -15.06352 -14.97609 -14.70790 -14.53013 -14.16647 -14.00068 -13.83099 -13.49511 -13.42540 -13.24977 -13.07975 -12.67326 -12.37981 -12.18196 -12.04310 -11.86980 -11.65045 -11.49046 -11.40295 -11.08203 -10.92860 -10.71867 -10.45464 -10.43772 -10.39087 -10.21126 -10.19302 -10.00827 -9.46633 -9.19082 -8.83727 -8.40073 -7.94065 -7.80612 -6.39742 -3.80266 1.25910 1.85105 2.30769 2.68415 3.03336 3.20980 3.26260 3.30789 3.92570 3.97819 4.17567 4.24088 4.40058 4.47513 4.55632 4.66795 4.81387 4.86594 4.94936 4.96697 5.12779 5.15450 5.22061 5.26771 5.32954 5.43263 5.46384 5.52884 5.58705 5.64742 5.75027 5.78719 5.84807 5.92261 5.94693 6.01341 6.14937 6.27234 6.33347 6.37373 6.53003 6.67746 7.07370 7.21654 7.25328 7.30127 7.56736 8.01393 8.08643 8.64883 9.20789 9.57474 10.10089 10.78155 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013698 B = 0.002635 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.545371 B =10623.022219 C =11914.434565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.040 3.960 13 N -0.501 5.501 14 C 0.058 3.942 15 C -0.133 4.133 16 C -0.106 4.106 17 H 0.093 0.907 18 C 0.126 3.874 19 N -0.602 5.602 20 C 0.600 3.400 21 O -0.546 6.546 22 C -0.287 4.287 23 C 0.080 3.920 24 N -0.292 5.292 25 N -0.463 5.463 26 H 0.445 0.555 27 C 0.124 3.876 28 C 0.101 3.899 29 C -0.165 4.165 30 C 0.081 3.919 31 H 0.098 0.902 32 H 0.271 0.729 33 H 0.391 0.609 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.193 0.807 43 H 0.188 0.812 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 -20.733 -5.109 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.427 4.427 8 H 0.119 0.881 9 N -0.204 5.204 10 C 0.229 3.771 11 O -0.460 6.460 12 C -0.091 4.091 13 N -0.225 5.225 14 C -0.070 4.070 15 C -0.171 4.171 16 C -0.125 4.125 17 H 0.111 0.889 18 C 0.003 3.997 19 N -0.335 5.335 20 C 0.388 3.612 21 O -0.424 6.424 22 C -0.302 4.302 23 C -0.107 4.107 24 N -0.113 5.113 25 N -0.168 5.168 26 H 0.290 0.710 27 C -0.028 4.028 28 C -0.023 4.023 29 C -0.204 4.204 30 C -0.027 4.027 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.224 0.776 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.210 0.790 43 H 0.205 0.795 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.941 -20.624 -5.111 22.353 hybrid contribution -0.287 0.937 -0.931 1.352 sum -7.228 -19.687 -6.041 21.825 Atomic orbital electron populations 1.69602 1.05904 1.28156 1.50884 1.25235 0.95618 0.99629 0.97465 0.85938 0.78768 0.80575 0.79056 1.19973 1.21015 1.19903 1.19638 0.93297 0.82276 1.47511 0.88059 1.41853 1.09094 1.04579 1.64919 1.19823 0.88464 0.84590 0.84257 1.90516 1.13718 1.87041 1.54724 1.22099 0.94310 0.91397 1.01321 1.63732 1.25688 1.00900 1.32137 1.22763 1.00832 0.94325 0.89061 1.22721 1.01538 0.96062 0.96786 1.21884 0.99338 0.94007 0.97298 0.88891 1.21063 0.82076 0.96468 1.00111 1.47905 1.13714 1.47777 1.24094 1.17231 0.84949 0.79491 0.79545 1.90778 1.57609 1.35497 1.58490 1.20232 0.95119 1.21393 0.93476 1.24126 0.89190 0.97344 1.00085 1.77188 1.22580 1.23750 0.87787 1.46207 1.06532 1.54794 1.09296 0.71000 1.22954 0.86042 0.95499 0.98352 1.22027 0.94260 0.90024 0.95981 1.22667 0.98094 0.97146 1.02514 1.22750 0.91045 0.89553 0.99391 0.88421 0.91902 0.77606 0.93165 0.89491 0.89916 0.93213 0.90915 0.91872 0.91268 0.88856 0.79004 0.79470 0.88858 0.90613 0.91104 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.57 -14.34 5.29 -10.96 -0.06 -14.40 16 10 C 0.44 10.42 7.46 -10.99 -0.08 10.34 16 11 O -0.58 -15.62 15.12 5.55 0.08 -15.54 16 12 C 0.04 0.70 3.87 -4.97 -0.02 0.68 16 13 N -0.50 -8.00 4.86 -223.94 -1.09 -9.09 16 14 C 0.06 0.92 5.32 -2.52 -0.01 0.90 16 15 C -0.13 -1.62 5.89 -25.21 -0.15 -1.77 16 16 C -0.11 -1.11 2.88 -90.32 -0.26 -1.37 16 17 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 18 C 0.13 1.19 5.87 -4.74 -0.03 1.16 16 19 N -0.60 -5.80 2.79 -175.31 -0.49 -6.29 16 20 C 0.60 6.79 7.60 -12.52 -0.10 6.69 16 21 O -0.55 -7.95 16.58 5.27 0.09 -7.86 16 22 C -0.29 -2.72 5.38 -105.07 -0.57 -3.28 16 23 C 0.08 0.67 9.63 -16.98 -0.16 0.51 16 24 N -0.29 -2.69 12.63 30.86 0.39 -2.30 16 25 N -0.46 -3.16 7.29 30.85 0.22 -2.93 16 26 H 0.45 1.56 8.96 -182.72 -1.64 -0.08 16 27 C 0.12 0.94 12.02 -16.56 -0.20 0.74 16 28 C 0.10 0.80 5.88 -3.78 -0.02 0.77 16 29 C -0.16 -1.66 3.73 -26.78 -0.10 -1.76 16 30 C 0.08 0.93 3.70 -65.96 -0.24 0.69 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 34 H 0.05 0.81 6.32 -51.93 -0.33 0.48 16 35 H 0.09 1.36 7.43 -51.92 -0.39 0.97 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.05 0.87 7.36 -51.93 -0.38 0.49 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.80 7.42 -51.93 -0.39 0.42 16 40 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 41 H 0.09 1.00 7.06 -51.93 -0.37 0.63 16 42 H 0.19 1.11 7.09 -52.48 -0.37 0.74 16 43 H 0.19 0.97 8.06 -52.49 -0.42 0.54 16 44 H 0.09 0.68 4.05 -51.93 -0.21 0.47 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.85 5.91 -51.93 -0.31 0.54 16 47 H 0.08 0.80 6.89 -51.93 -0.36 0.44 16 LS Contribution 371.65 15.07 5.60 5.60 Total: -1.00 -35.65 371.65 -9.25 -44.90 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -7.52 Total: 9.31 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -2.18 Total: 6.34 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.30 Total: -58.84 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: 0.17 Total: -23.40 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.65 -9.25 -44.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716033336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.967 kcal (2) G-P(sol) polarization free energy of solvation -35.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds