Wall clock time and date at job start Wed Apr 1 2020 05:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48499 * 109.46896 * 270.00102 * 3 2 1 5 5 H 1.48506 * 109.46723 * 29.99872 * 3 2 1 6 6 H 1.48496 * 109.47378 * 149.99559 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 O 1.42905 * 114.38419 * 272.46719 * 11 10 9 13 13 C 1.52997 * 114.21050 * 139.65380 * 11 10 9 14 14 N 1.46504 * 109.46941 * 86.39889 * 13 11 10 15 15 C 1.34780 * 119.99814 * 180.02562 * 14 13 11 16 16 O 1.21561 * 119.99966 * 0.02562 * 15 14 13 17 17 C 1.47855 * 120.00121 * 179.97438 * 15 14 13 18 18 C 1.40060 * 120.09653 * 179.97438 * 17 15 14 19 19 C 1.38288 * 117.99378 * 179.97438 * 18 17 15 20 20 C 1.39594 * 118.02982 * 359.97438 * 19 18 17 21 21 N 1.38503 * 120.04864 * 179.97438 * 20 19 18 22 22 C 1.48530 * 111.00550 * 62.60496 * 21 20 19 23 23 C 1.54933 * 103.23012 * 159.72194 * 22 21 20 24 24 C 1.54596 * 102.91879 * 322.58408 * 23 22 21 25 25 C 1.47899 * 111.00018 * 180.02562 * 21 20 19 26 26 N 1.32861 * 119.90173 * 0.02562 * 20 19 18 27 27 N 1.28350 * 122.16120 * 359.73407 * 26 20 19 28 28 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 29 29 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 30 30 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 31 31 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 32 32 H 0.96696 * 113.99817 * 273.68776 * 12 11 10 33 33 H 1.09003 * 109.47151 * 206.40104 * 13 11 10 34 34 H 1.08997 * 109.47141 * 326.39972 * 13 11 10 35 35 H 0.96992 * 120.00307 * 0.02562 * 14 13 11 36 36 H 1.08001 * 121.00351 * 0.02562 * 18 17 15 37 37 H 1.08004 * 120.98565 * 179.97438 * 19 18 17 38 38 H 1.09001 * 110.66369 * 278.15920 * 22 21 20 39 39 H 1.09003 * 110.66332 * 41.28163 * 22 21 20 40 40 H 1.09002 * 110.72338 * 204.22778 * 23 22 21 41 41 H 1.08998 * 110.72414 * 80.94306 * 23 22 21 42 42 H 1.09004 * 110.31022 * 263.04189 * 24 23 22 43 43 H 1.09000 * 110.30647 * 140.87658 * 24 23 22 44 44 H 1.09005 * 109.92124 * 333.50613 * 25 21 20 45 45 H 1.09002 * 109.92275 * 94.80247 * 25 21 20 46 46 H 1.09005 * 113.46156 * 321.64040 * 28 9 7 47 47 H 1.08994 * 113.46837 * 92.01680 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 8 0.3874 -4.0066 -2.1181 13 6 -0.3820 -5.3441 -0.1867 14 7 -1.6426 -5.5094 -0.9148 15 6 -2.4508 -6.5510 -0.6350 16 8 -2.1341 -7.3531 0.2218 17 6 -3.7233 -6.7175 -1.3693 18 6 -4.5644 -7.7995 -1.0805 19 6 -5.7441 -7.9129 -1.7932 20 6 -6.0246 -6.9420 -2.7562 21 7 -7.1941 -7.0151 -3.4946 22 6 -8.3864 -6.8994 -2.6165 23 6 -9.5088 -6.4750 -3.5966 24 6 -8.7774 -5.5186 -4.5664 25 6 -7.2875 -5.8918 -4.4522 26 7 -5.1676 -5.9482 -2.9640 27 7 -4.0744 -5.8388 -2.3005 28 6 1.6797 -3.8155 0.0005 29 1 -0.4849 0.8401 -0.0004 30 1 -0.4897 -2.9528 1.0077 31 1 -0.7251 -2.1596 -0.6083 32 1 -0.4588 -4.1818 -2.5519 33 1 0.2490 -6.2179 -0.3498 34 1 -0.5887 -5.2389 0.8783 35 1 -1.8955 -4.8692 -1.5982 36 1 -4.3001 -8.5231 -0.3235 37 1 -6.4281 -8.7284 -1.6102 38 1 -8.6200 -7.8596 -2.1565 39 1 -8.2307 -6.1348 -1.8554 40 1 -10.3057 -5.9524 -3.0675 41 1 -9.9017 -7.3399 -4.1310 42 1 -8.9324 -4.4827 -4.2649 43 1 -9.1287 -5.6731 -5.5866 44 1 -6.7186 -5.0392 -4.0811 45 1 -6.9061 -6.2008 -5.4255 46 1 2.5452 -4.0479 -0.6200 47 1 1.7501 -4.2453 0.9997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716945139.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:29 Heat of formation + Delta-G solvation = 64.132932 kcal Electronic energy + Delta-G solvation = -29870.908227 eV Core-core repulsion = 25671.302116 eV Total energy + Delta-G solvation = -4199.606111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75151 -40.00676 -39.15800 -38.49442 -35.07414 -34.22934 -33.79328 -33.47296 -32.01311 -30.47936 -29.57136 -28.54491 -26.32815 -25.20567 -24.79943 -24.57006 -22.33571 -21.84712 -21.37226 -20.94828 -19.42889 -18.78339 -17.96581 -17.79879 -16.74399 -16.47323 -15.97244 -15.84964 -15.74679 -15.13226 -14.92050 -14.77574 -14.42471 -14.25341 -13.95187 -13.80471 -13.68689 -13.42159 -13.25013 -13.06735 -12.75292 -12.71376 -12.21707 -12.16607 -11.86907 -11.84296 -11.65952 -11.09073 -11.05730 -10.90555 -10.88458 -10.68443 -10.61783 -10.46845 -10.27010 -10.05523 -9.82999 -9.49023 -9.21778 -8.96750 -8.86090 -8.80872 -6.87883 -5.74667 -3.06678 0.13284 0.42329 2.38961 2.83732 3.01126 3.38278 3.42163 3.46205 3.48275 3.65590 3.93104 4.04676 4.23197 4.32906 4.37578 4.45679 4.53783 4.54725 4.64750 4.76401 4.89306 4.98116 5.04074 5.13527 5.24154 5.28508 5.31803 5.33874 5.38424 5.42128 5.51775 5.61262 5.69092 5.70066 5.74426 5.98389 6.06502 6.26064 6.38605 6.39754 6.53116 6.54848 7.01324 7.18978 7.33967 7.52670 7.95903 7.98397 8.19190 8.24175 9.04972 9.71866 10.62676 11.43037 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.002190 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.722031 B =12782.090221 C =14260.404223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.213 4.213 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.136 3.864 11 C 0.057 3.943 12 O -0.521 6.521 13 C 0.105 3.895 14 N -0.701 5.701 15 C 0.579 3.421 16 O -0.532 6.532 17 C 0.004 3.996 18 C -0.044 4.044 19 C -0.133 4.133 20 C 0.260 3.740 21 N -0.456 5.456 22 C 0.041 3.959 23 C -0.123 4.123 24 C -0.133 4.133 25 C 0.030 3.970 26 N -0.275 5.275 27 N -0.183 5.183 28 C 0.135 3.865 29 H 0.253 0.747 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.363 0.637 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.409 0.591 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.595 -18.266 -6.208 28.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.341 4.341 8 H 0.100 0.900 9 N -0.324 5.324 10 C 0.010 3.990 11 C 0.014 3.986 12 O -0.325 6.325 13 C -0.019 4.019 14 N -0.353 5.353 15 C 0.362 3.638 16 O -0.408 6.408 17 C -0.145 4.145 18 C -0.073 4.073 19 C -0.164 4.164 20 C 0.023 3.977 21 N -0.174 5.174 22 C -0.085 4.085 23 C -0.161 4.161 24 C -0.171 4.171 25 C -0.097 4.097 26 N -0.124 5.124 27 N -0.029 5.029 28 C 0.008 3.992 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.209 0.791 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.246 0.754 36 H 0.183 0.817 37 H 0.175 0.825 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.070 0.930 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.298 -17.408 -6.580 26.810 hybrid contribution -0.637 0.358 0.726 1.029 sum -19.935 -17.051 -5.854 26.877 Atomic orbital electron populations 1.69818 1.05025 1.25317 1.56592 1.24796 0.95732 0.97552 1.02449 0.86072 0.78515 0.83242 0.77638 1.21480 1.21675 1.20654 1.18899 0.90121 0.81169 1.43863 0.89977 1.45255 1.02308 0.99113 1.85769 1.22756 0.89689 0.89915 0.96677 1.23428 0.99796 0.93252 0.82157 1.86630 1.35371 1.93653 1.16866 1.22076 0.83442 0.99184 0.97218 1.45804 1.21382 1.27303 1.40797 1.17405 0.82281 0.81799 0.82342 1.90810 1.73889 1.43523 1.32600 1.22729 0.98027 0.95723 0.98048 1.22314 0.91400 0.96448 0.97159 1.21927 0.98445 0.99845 0.96187 1.21705 0.94447 0.91126 0.90469 1.61680 0.99714 1.42604 1.13450 1.23409 0.87866 1.02304 0.94873 1.22520 0.96882 0.99936 0.96790 1.22469 0.94064 0.99898 1.00717 1.23024 0.97254 0.92776 0.96609 1.73329 1.00077 1.17654 1.21369 1.73074 1.07809 1.20809 1.01222 1.22372 0.93625 0.87026 0.96189 0.93688 0.94906 0.90428 0.79095 0.90571 0.89761 0.75391 0.81719 0.82478 0.88783 0.92181 0.90097 0.90151 0.90747 0.90387 0.89512 0.89360 0.93010 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.75 11.51 55.49 0.64 -27.11 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.92 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.21 -6.15 10.75 -15.06 -0.16 -6.31 16 8 H 0.08 2.28 7.83 -52.49 -0.41 1.87 16 9 N -0.60 -15.79 3.78 -184.76 -0.70 -16.49 16 10 C 0.14 3.19 6.83 -8.51 -0.06 3.13 16 11 C 0.06 1.07 1.73 -90.12 -0.16 0.91 16 12 O -0.52 -10.00 13.56 -35.23 -0.48 -10.48 16 13 C 0.11 1.62 5.43 -4.04 -0.02 1.60 16 14 N -0.70 -9.89 5.33 -61.24 -0.33 -10.21 16 15 C 0.58 8.23 7.80 -12.32 -0.10 8.13 16 16 O -0.53 -8.63 16.38 5.31 0.09 -8.54 16 17 C 0.00 0.05 6.83 -82.85 -0.57 -0.52 16 18 C -0.04 -0.42 9.71 -38.88 -0.38 -0.80 16 19 C -0.13 -1.07 9.57 -39.06 -0.37 -1.45 16 20 C 0.26 2.56 6.27 -154.94 -0.97 1.59 16 21 N -0.46 -3.65 5.29 -169.11 -0.89 -4.55 16 22 C 0.04 0.23 6.06 -1.90 -0.01 0.22 16 23 C -0.12 -0.54 7.06 -24.87 -0.18 -0.71 16 24 C -0.13 -0.71 6.93 -25.36 -0.18 -0.89 16 25 C 0.03 0.23 6.35 -2.74 -0.02 0.22 16 26 N -0.28 -3.39 9.32 31.21 0.29 -3.10 16 27 N -0.18 -2.40 10.73 33.32 0.36 -2.05 16 28 C 0.13 2.83 8.11 -8.52 -0.07 2.76 16 29 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 31 H 0.08 2.04 7.12 -51.93 -0.37 1.67 16 32 H 0.36 5.48 7.20 45.56 0.33 5.81 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.32 7.89 -51.93 -0.41 0.91 16 35 H 0.41 5.49 6.29 -40.82 -0.26 5.24 16 36 H 0.17 1.31 7.71 -52.49 -0.40 0.91 16 37 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.37 7.99 -51.93 -0.42 -0.04 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.83 6.51 -51.93 -0.34 0.49 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -35.52 387.79 -9.58 -45.10 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.05 Total: 6.49 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -3.33 Total: 7.52 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.63 Total: -63.50 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.39 Total: -19.02 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.52 -9.58 -45.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716945139.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.233 kcal (2) G-P(sol) polarization free energy of solvation -35.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds