Wall clock time and date at job start Wed Apr 1 2020 05:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48499 * 109.46896 * 270.00102 * 3 2 1 5 5 H 1.48506 * 109.46723 * 29.99872 * 3 2 1 6 6 H 1.48496 * 109.47378 * 149.99559 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 O 1.42905 * 114.38419 * 272.46719 * 11 10 9 13 13 C 1.52997 * 114.21050 * 139.65380 * 11 10 9 14 14 N 1.46504 * 109.46941 * 86.39889 * 13 11 10 15 15 C 1.34780 * 119.99814 * 180.02562 * 14 13 11 16 16 O 1.21561 * 119.99966 * 0.02562 * 15 14 13 17 17 C 1.47855 * 120.00121 * 179.97438 * 15 14 13 18 18 C 1.40060 * 120.09653 * 179.97438 * 17 15 14 19 19 C 1.38288 * 117.99378 * 179.97438 * 18 17 15 20 20 C 1.39594 * 118.02982 * 359.97438 * 19 18 17 21 21 N 1.38503 * 120.04864 * 179.97438 * 20 19 18 22 22 C 1.48530 * 111.00550 * 62.60496 * 21 20 19 23 23 C 1.54933 * 103.23012 * 159.72194 * 22 21 20 24 24 C 1.54596 * 102.91879 * 322.58408 * 23 22 21 25 25 C 1.47899 * 111.00018 * 180.02562 * 21 20 19 26 26 N 1.32861 * 119.90173 * 0.02562 * 20 19 18 27 27 N 1.28350 * 122.16120 * 359.73407 * 26 20 19 28 28 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 29 29 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 30 30 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 31 31 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 32 32 H 0.96696 * 113.99817 * 273.68776 * 12 11 10 33 33 H 1.09003 * 109.47151 * 206.40104 * 13 11 10 34 34 H 1.08997 * 109.47141 * 326.39972 * 13 11 10 35 35 H 0.96992 * 120.00307 * 0.02562 * 14 13 11 36 36 H 1.08001 * 121.00351 * 0.02562 * 18 17 15 37 37 H 1.08004 * 120.98565 * 179.97438 * 19 18 17 38 38 H 1.09001 * 110.66369 * 278.15920 * 22 21 20 39 39 H 1.09003 * 110.66332 * 41.28163 * 22 21 20 40 40 H 1.09002 * 110.72338 * 204.22778 * 23 22 21 41 41 H 1.08998 * 110.72414 * 80.94306 * 23 22 21 42 42 H 1.09004 * 110.31022 * 263.04189 * 24 23 22 43 43 H 1.09000 * 110.30647 * 140.87658 * 24 23 22 44 44 H 1.09005 * 109.92124 * 333.50613 * 25 21 20 45 45 H 1.09002 * 109.92275 * 94.80247 * 25 21 20 46 46 H 1.09005 * 113.46156 * 321.64040 * 28 9 7 47 47 H 1.08994 * 113.46837 * 92.01680 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 8 0.3874 -4.0066 -2.1181 13 6 -0.3820 -5.3441 -0.1867 14 7 -1.6426 -5.5094 -0.9148 15 6 -2.4508 -6.5510 -0.6350 16 8 -2.1341 -7.3531 0.2218 17 6 -3.7233 -6.7175 -1.3693 18 6 -4.5644 -7.7995 -1.0805 19 6 -5.7441 -7.9129 -1.7932 20 6 -6.0246 -6.9420 -2.7562 21 7 -7.1941 -7.0151 -3.4946 22 6 -8.3864 -6.8994 -2.6165 23 6 -9.5088 -6.4750 -3.5966 24 6 -8.7774 -5.5186 -4.5664 25 6 -7.2875 -5.8918 -4.4522 26 7 -5.1676 -5.9482 -2.9640 27 7 -4.0744 -5.8388 -2.3005 28 6 1.6797 -3.8155 0.0005 29 1 -0.4849 0.8401 -0.0004 30 1 -0.4897 -2.9528 1.0077 31 1 -0.7251 -2.1596 -0.6083 32 1 -0.4588 -4.1818 -2.5519 33 1 0.2490 -6.2179 -0.3498 34 1 -0.5887 -5.2389 0.8783 35 1 -1.8955 -4.8692 -1.5982 36 1 -4.3001 -8.5231 -0.3235 37 1 -6.4281 -8.7284 -1.6102 38 1 -8.6200 -7.8596 -2.1565 39 1 -8.2307 -6.1348 -1.8554 40 1 -10.3057 -5.9524 -3.0675 41 1 -9.9017 -7.3399 -4.1310 42 1 -8.9324 -4.4827 -4.2649 43 1 -9.1287 -5.6731 -5.5866 44 1 -6.7186 -5.0392 -4.0811 45 1 -6.9061 -6.2008 -5.4255 46 1 2.5452 -4.0479 -0.6200 47 1 1.7501 -4.2453 0.9997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716945139.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:28 Heat of formation + Delta-G solvation = 35.782256 kcal Electronic energy + Delta-G solvation = -29872.137605 eV Core-core repulsion = 25671.302116 eV Total energy + Delta-G solvation = -4200.835488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.54879 -41.21499 -40.31089 -39.53202 -36.65386 -35.43905 -34.60738 -34.26535 -34.06805 -31.30420 -30.15766 -30.05049 -27.92817 -26.56653 -26.09556 -25.45382 -23.88740 -22.64377 -22.15251 -21.72174 -21.07937 -19.90742 -18.84960 -18.63184 -18.51424 -17.37254 -17.19184 -16.98142 -16.85958 -16.61922 -15.97971 -15.82461 -15.68364 -15.43304 -15.18814 -14.97581 -14.76940 -14.61072 -14.29339 -14.16711 -13.90546 -13.72712 -13.46925 -13.28865 -13.02041 -12.94460 -12.83609 -12.51774 -12.28824 -12.25053 -12.14614 -11.82240 -11.63322 -11.52050 -11.45946 -11.37625 -11.21253 -10.96341 -10.86808 -10.70704 -10.26078 -9.63985 -8.95517 -7.92246 -5.25493 -0.69492 -0.31810 1.43299 1.44066 1.47295 1.55364 1.79815 2.24838 2.45552 2.50282 2.83632 3.01561 3.22477 3.29745 3.33352 3.50047 3.54736 3.64163 3.67344 3.85610 3.86597 3.87371 4.09038 4.26655 4.35473 4.36804 4.48066 4.61901 4.67609 4.69294 4.73281 4.76090 4.84955 4.86090 4.91836 4.95697 5.05278 5.13099 5.13798 5.15081 5.22246 5.29672 5.46224 5.53617 5.73274 5.89842 6.20550 6.73014 6.88071 6.89790 7.40435 7.57280 8.55886 9.25186 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.002190 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.722031 B =12782.090221 C =14260.404223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.983 3.017 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.227 4.227 8 H 0.086 0.914 9 N -0.635 5.635 10 C 0.133 3.867 11 C 0.089 3.911 12 O -0.538 6.538 13 C 0.120 3.880 14 N -0.701 5.701 15 C 0.583 3.417 16 O -0.553 6.553 17 C -0.013 4.013 18 C -0.043 4.043 19 C -0.116 4.116 20 C 0.256 3.744 21 N -0.455 5.455 22 C 0.037 3.963 23 C -0.117 4.117 24 C -0.131 4.131 25 C 0.026 3.974 26 N -0.303 5.303 27 N -0.206 5.206 28 C 0.131 3.869 29 H 0.248 0.752 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.380 0.620 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.411 0.589 36 H 0.183 0.817 37 H 0.197 0.803 38 H 0.118 0.882 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.055 0.945 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.841 -20.325 -6.187 30.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.811 3.189 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.355 4.355 8 H 0.103 0.897 9 N -0.361 5.361 10 C 0.007 3.993 11 C 0.046 3.954 12 O -0.344 6.344 13 C -0.005 4.005 14 N -0.353 5.353 15 C 0.367 3.633 16 O -0.430 6.430 17 C -0.162 4.162 18 C -0.072 4.072 19 C -0.146 4.146 20 C 0.018 3.982 21 N -0.174 5.174 22 C -0.088 4.088 23 C -0.155 4.155 24 C -0.169 4.169 25 C -0.101 4.101 26 N -0.152 5.152 27 N -0.052 5.052 28 C 0.006 3.994 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.229 0.771 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.249 0.751 36 H 0.200 0.800 37 H 0.214 0.786 38 H 0.136 0.864 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.073 0.927 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.556 -19.502 -6.577 29.088 hybrid contribution -0.334 0.919 0.649 1.174 sum -20.890 -18.583 -5.928 28.581 Atomic orbital electron populations 1.70015 1.06464 1.25585 1.58089 1.25684 0.96685 1.00993 1.02927 0.85009 0.77662 0.78743 0.77489 1.21336 1.21920 1.19129 1.19306 0.90713 0.82652 1.42858 0.89654 1.45621 1.03788 1.00556 1.86102 1.22751 0.88225 0.91823 0.96496 1.22927 0.98262 0.92513 0.81724 1.86578 1.37005 1.93746 1.17060 1.21821 0.83957 0.97587 0.97096 1.45752 1.21110 1.27646 1.40792 1.17601 0.82625 0.81104 0.81966 1.90790 1.74536 1.44165 1.33551 1.22592 0.97892 0.97141 0.98618 1.22531 0.91321 0.95782 0.97548 1.22304 0.98146 0.99828 0.94361 1.22060 0.94597 0.90885 0.90660 1.61779 0.99857 1.42104 1.13619 1.23596 0.87006 1.03450 0.94713 1.22548 0.96622 1.00072 0.96263 1.22468 0.92407 1.00206 1.01824 1.23021 0.98762 0.92038 0.96239 1.73274 1.00502 1.19239 1.22191 1.72996 1.08646 1.21665 1.01927 1.22612 0.94721 0.84295 0.97810 0.94328 0.95182 0.94036 0.77118 0.88918 0.89613 0.75125 0.79960 0.78580 0.86379 0.93001 0.88675 0.89122 0.90858 0.89332 0.91763 0.89861 0.92705 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.20 11.51 21.65 0.25 -58.96 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 3 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 4 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.23 -13.28 10.75 84.03 0.90 -12.37 16 8 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 9 N -0.64 -33.88 3.78 -738.94 -2.79 -36.68 16 10 C 0.13 6.42 6.83 83.18 0.57 6.98 16 11 C 0.09 3.31 1.73 -10.47 -0.02 3.29 16 12 O -0.54 -20.52 13.56 -148.98 -2.02 -22.54 16 13 C 0.12 3.56 5.43 86.38 0.47 4.03 16 14 N -0.70 -19.52 5.33 -465.94 -2.48 -22.00 16 15 C 0.58 16.21 7.80 86.79 0.68 16.89 16 16 O -0.55 -17.30 16.38 -3.91 -0.06 -17.37 16 17 C -0.01 -0.31 6.83 41.99 0.29 -0.03 16 18 C -0.04 -0.75 9.71 22.72 0.22 -0.53 16 19 C -0.12 -1.57 9.57 22.61 0.22 -1.36 16 20 C 0.26 4.74 6.27 133.21 0.84 5.57 16 21 N -0.46 -6.57 5.29 -688.93 -3.64 -10.22 16 22 C 0.04 0.32 6.06 86.65 0.53 0.84 16 23 C -0.12 -0.72 7.06 31.80 0.22 -0.49 16 24 C -0.13 -1.23 6.93 31.48 0.22 -1.01 16 25 C 0.03 0.40 6.35 86.46 0.55 0.95 16 26 N -0.30 -7.54 9.32 -55.17 -0.51 -8.05 16 27 N -0.21 -5.51 10.73 -48.51 -0.52 -6.03 16 28 C 0.13 5.41 8.11 83.17 0.67 6.08 16 29 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.03 1.46 7.93 -2.38 -0.02 1.44 16 31 H 0.04 2.28 7.12 -2.39 -0.02 2.26 16 32 H 0.38 11.48 7.20 -74.06 -0.53 10.94 16 33 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.09 2.57 7.89 -2.39 -0.02 2.55 16 35 H 0.41 11.18 6.29 -92.71 -0.58 10.60 16 36 H 0.18 2.46 7.71 -2.91 -0.02 2.44 16 37 H 0.20 1.04 8.06 -2.91 -0.02 1.02 16 38 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.05 0.56 7.99 -2.39 -0.02 0.54 16 40 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.06 1.29 6.51 -2.38 -0.02 1.27 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 47 H 0.08 2.78 8.10 -2.39 -0.02 2.76 16 Total: -1.00 -78.69 387.79 -3.05 -81.74 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.10 Total: 25.72 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: 6.82 Total: 25.18 kcal Atomic # 7 Polarization: -132.22 SS G_CDS: -9.71 Total: -141.93 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -2.08 Total: -39.91 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -78.69 -3.05 -81.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716945139.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.522 kcal (2) G-P(sol) polarization free energy of solvation -78.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds