Wall clock time and date at job start Wed Apr 1 2020 04:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42096 * 110.54184 * 2 1 4 4 O 1.42100 * 110.54118 * 223.24725 * 2 1 3 5 5 N 1.65597 * 104.45248 * 111.62452 * 2 1 3 6 6 C 1.46499 * 119.99901 * 64.99385 * 5 2 1 7 7 C 1.53004 * 109.46929 * 165.00312 * 6 5 2 8 8 C 1.50700 * 109.47237 * 180.02562 * 7 6 5 9 9 O 1.21286 * 119.99804 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00300 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00579 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46824 * 325.00438 * 11 10 8 13 13 C 1.52998 * 109.47341 * 84.99728 * 11 10 8 14 14 C 1.53001 * 109.47586 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.46855 * 300.00505 * 14 13 11 16 16 C 1.52998 * 109.47470 * 59.99798 * 15 14 13 17 17 C 1.52994 * 109.47443 * 204.99985 * 11 10 8 18 18 H 1.08995 * 109.47674 * 299.99764 * 17 11 10 19 19 C 1.52998 * 109.47095 * 59.99968 * 17 11 10 20 20 N 1.46506 * 109.47237 * 184.99775 * 19 17 11 21 21 C 1.36939 * 120.00073 * 179.72302 * 20 19 17 22 22 H 1.08004 * 119.99859 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99849 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00455 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00168 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46615 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47374 * 119.99782 * 25 23 21 28 28 H 1.48495 * 109.47187 * 240.00172 * 25 23 21 29 29 H 1.09004 * 109.46692 * 308.37387 * 1 2 3 30 30 H 1.09001 * 109.47295 * 68.37488 * 1 2 3 31 31 H 1.09004 * 109.47181 * 188.38051 * 1 2 3 32 32 H 0.96998 * 119.99801 * 244.99992 * 5 2 1 33 33 H 1.08997 * 109.47137 * 45.00737 * 6 5 2 34 34 H 1.08993 * 109.47758 * 285.00421 * 6 5 2 35 35 H 1.08990 * 109.47201 * 60.00188 * 7 6 5 36 36 H 1.08999 * 109.47062 * 300.00167 * 7 6 5 37 37 H 0.97003 * 119.99751 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47186 * 300.00830 * 13 11 10 39 39 H 1.08999 * 109.46837 * 60.00131 * 13 11 10 40 40 H 1.09008 * 109.46644 * 60.00133 * 14 13 11 41 41 H 1.08995 * 109.47001 * 180.02562 * 14 13 11 42 42 H 1.09005 * 109.47048 * 180.02562 * 15 14 13 43 43 H 1.09008 * 109.47190 * 299.99293 * 15 14 13 44 44 H 1.09000 * 109.46704 * 180.02562 * 16 15 14 45 45 H 1.08991 * 109.47281 * 59.99838 * 16 15 14 46 46 H 1.09001 * 109.47671 * 65.00115 * 19 17 11 47 47 H 1.08998 * 109.47454 * 305.00112 * 19 17 11 48 48 H 0.97005 * 119.99811 * 0.02562 * 20 19 17 49 49 H 0.97000 * 120.00679 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 7 2.2273 -0.5910 1.4907 6 6 1.8907 -1.9706 1.8508 7 6 2.6875 -2.3830 3.0902 8 6 2.3419 -3.8023 3.4603 9 8 1.5371 -4.4228 2.7982 10 7 2.9262 -4.3819 4.5275 11 6 2.5898 -5.7615 4.8876 12 1 1.5376 -5.9471 4.6717 13 6 3.4550 -6.7264 4.0744 14 6 3.1033 -8.1672 4.4501 15 6 3.3631 -8.3831 5.9422 16 6 2.4978 -7.4183 6.7555 17 6 2.8501 -5.9770 6.3798 18 1 3.9022 -5.7915 6.5957 19 6 1.9848 -5.0122 7.1930 20 7 2.3201 -5.1347 8.6139 21 6 1.6735 -4.3596 9.5393 22 1 0.9160 -3.6583 9.2216 23 6 1.9915 -4.4753 10.8854 24 7 2.9143 -5.3304 11.2726 25 14 1.1090 -3.4186 12.1479 26 1 0.1232 -2.5461 11.4607 27 1 0.4042 -4.2929 13.1195 28 1 2.0983 -2.5763 12.8668 29 1 -0.3633 0.6380 0.8057 30 1 -0.3634 0.3787 -0.9553 31 1 -0.3634 -1.0167 0.1498 32 1 2.6921 -0.0236 2.1255 33 1 2.1393 -2.6333 1.0219 34 1 0.8243 -2.0405 2.0646 35 1 2.4390 -1.7203 3.9190 36 1 3.7541 -2.3131 2.8763 37 1 3.5696 -3.8855 5.0572 38 1 3.2697 -6.5728 3.0113 39 1 4.5072 -6.5408 4.2902 40 1 2.0511 -8.3525 4.2339 41 1 3.7200 -8.8545 3.8710 42 1 3.1130 -9.4098 6.2098 43 1 4.4154 -8.1979 6.1584 44 1 2.6834 -7.5719 7.8185 45 1 1.4457 -7.6035 6.5394 46 1 0.9326 -5.2555 7.0458 47 1 2.1711 -3.9904 6.8625 48 1 3.0033 -5.7618 8.8987 49 1 3.1368 -5.4110 12.2133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722937404.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:54 Heat of formation + Delta-G solvation = -121.746189 kcal Electronic energy + Delta-G solvation = -28801.392283 eV Core-core repulsion = 24696.877049 eV Total energy + Delta-G solvation = -4104.515234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.23518 -38.40194 -37.46538 -36.34059 -35.95353 -34.66160 -34.16578 -31.93857 -30.97832 -29.88166 -29.66293 -28.94016 -25.32330 -24.16122 -23.04843 -21.98390 -20.68679 -20.46907 -20.00908 -19.50482 -18.09776 -17.32628 -17.13560 -16.72631 -16.33110 -16.14456 -15.86836 -15.02385 -14.91264 -14.53903 -14.37083 -14.12902 -13.85730 -13.76426 -13.60333 -13.57034 -13.28856 -13.07806 -12.74772 -12.63491 -12.49761 -12.45500 -12.34178 -12.07400 -11.91570 -11.84434 -11.56129 -11.40828 -11.12836 -10.93319 -10.91633 -10.75650 -10.44171 -10.25394 -10.14562 -9.99674 -9.91522 -9.77395 -9.67185 -8.97810 -8.87778 -6.96038 -5.81335 -3.09770 -0.12019 2.27666 2.57102 3.16631 3.39408 3.42330 3.45330 3.47395 3.81885 4.25195 4.39302 4.52152 4.54769 4.68527 4.72021 4.80747 4.91016 5.03714 5.09070 5.18216 5.23105 5.26071 5.33400 5.48166 5.53645 5.56159 5.60946 5.64761 5.67846 5.71765 5.87236 6.07815 6.11392 6.17573 6.22520 6.26062 6.36413 6.51210 6.52878 6.54904 6.65098 6.74017 6.86589 7.48979 7.65881 8.17178 8.37737 9.49137 10.06871 10.41468 11.41519 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.002374 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.589993 B =11789.407295 C =14174.550906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.618 3.382 3 O -0.961 6.961 4 O -0.956 6.956 5 N -1.122 6.122 6 C 0.129 3.871 7 C -0.151 4.151 8 C 0.517 3.483 9 O -0.545 6.545 10 N -0.718 5.718 11 C 0.153 3.847 12 H 0.088 0.912 13 C -0.126 4.126 14 C -0.115 4.115 15 C -0.122 4.122 16 C -0.107 4.107 17 C -0.100 4.100 18 H 0.075 0.925 19 C 0.159 3.841 20 N -0.731 5.731 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.418 0.582 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.403 0.597 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 4.637 -21.279 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.710 3.290 3 O -0.952 6.952 4 O -0.946 6.946 5 N -0.882 5.882 6 C 0.002 3.998 7 C -0.192 4.192 8 C 0.303 3.697 9 O -0.423 6.423 10 N -0.368 5.368 11 C 0.049 3.951 12 H 0.106 0.894 13 C -0.165 4.165 14 C -0.153 4.153 15 C -0.159 4.159 16 C -0.145 4.145 17 C -0.119 4.119 18 H 0.093 0.907 19 C 0.032 3.968 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.253 0.747 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.238 0.762 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.035 0.965 47 H 0.036 0.964 48 H 0.218 0.782 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.832 4.457 -22.494 22.946 hybrid contribution -0.391 0.762 1.887 2.073 sum -1.223 5.219 -20.606 21.292 Atomic orbital electron populations 1.30525 1.28309 1.11936 1.11599 1.04591 0.77562 0.73712 0.73155 1.93625 1.78064 1.37742 1.85729 1.93628 1.77009 1.61770 1.62194 1.55589 1.74470 1.21442 1.36699 1.21049 0.99519 0.81031 0.98169 1.21806 1.02997 0.94921 0.99491 1.20331 0.80780 0.88171 0.80447 1.90710 1.34385 1.65405 1.51790 1.46107 1.45383 1.15348 1.29962 1.21022 1.00179 0.79788 0.94137 0.89403 1.21891 0.99801 0.94874 0.99895 1.21485 1.01583 0.95710 0.96512 1.21601 1.00344 0.99400 0.94582 1.21501 0.99480 0.92620 1.00908 1.21603 1.01188 0.96780 0.92351 0.90707 1.20656 0.95625 0.95079 0.85475 1.42380 1.46788 1.48301 1.00086 1.19248 1.15315 1.14916 0.87455 0.91286 1.24728 0.99418 0.99773 0.97062 1.69661 1.34402 1.38786 1.15324 0.86136 0.78771 0.79609 0.81776 1.20609 1.21865 1.21890 0.85158 0.85349 0.85145 0.74700 0.89187 0.90776 0.87798 0.87900 0.76208 0.91780 0.91921 0.91904 0.92167 0.92096 0.92033 0.90240 0.92050 0.96460 0.96439 0.78213 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.75 10.89 101.05 1.10 -1.65 16 2 S 2.62 18.44 6.10 -107.50 -0.66 17.78 16 3 O -0.96 -9.93 18.08 -57.54 -1.04 -10.97 16 4 O -0.96 -10.56 17.50 -57.54 -1.01 -11.56 16 5 N -1.12 -6.72 5.89 -10.61 -0.06 -6.79 16 6 C 0.13 0.96 5.42 -4.04 -0.02 0.93 16 7 C -0.15 -1.10 5.84 -27.88 -0.16 -1.27 16 8 C 0.52 5.77 7.79 -10.99 -0.09 5.69 16 9 O -0.55 -7.88 15.64 5.55 0.09 -7.79 16 10 N -0.72 -7.93 4.30 -53.81 -0.23 -8.16 16 11 C 0.15 1.95 1.90 -67.94 -0.13 1.82 16 12 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 13 C -0.13 -1.44 5.49 -26.73 -0.15 -1.58 16 14 C -0.11 -1.25 5.92 -26.73 -0.16 -1.41 16 15 C -0.12 -1.45 5.92 -26.74 -0.16 -1.60 16 16 C -0.11 -1.56 5.08 -26.71 -0.14 -1.69 16 17 C -0.10 -1.46 1.80 -90.60 -0.16 -1.62 16 18 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 19 C 0.16 2.98 5.56 -4.04 -0.02 2.96 16 20 N -0.73 -17.51 5.33 -59.91 -0.32 -17.83 16 21 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 22 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 25 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.13 0.38 8.14 -51.92 -0.42 -0.05 16 31 H 0.13 0.46 8.14 -51.92 -0.42 0.03 16 32 H 0.42 1.87 8.62 -34.47 -0.30 1.57 16 33 H 0.09 0.78 7.65 -51.93 -0.40 0.39 16 34 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.40 3.85 8.39 -40.82 -0.34 3.51 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 44 H 0.08 1.36 7.18 -51.93 -0.37 0.99 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.33 7.30 -51.93 -0.38 -0.05 16 48 H 0.38 9.65 6.85 -40.82 -0.28 9.37 16 49 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 405.70 15.07 6.11 6.11 Total: -1.00 -36.99 405.70 -10.09 -47.08 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -8.35 Total: 8.45 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.33 Total: -6.51 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 0.11 Total: -59.51 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -1.96 Total: -30.32 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 18.44 SS G_CDS: -0.66 Total: 17.78 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.99 -10.09 -47.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722937404.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.662 kcal (2) G-P(sol) polarization free energy of solvation -36.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds