Wall clock time and date at job start Wed Apr 1 2020 04:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42096 * 110.54184 * 2 1 4 4 O 1.42100 * 110.54118 * 223.24725 * 2 1 3 5 5 N 1.65597 * 104.45248 * 111.62452 * 2 1 3 6 6 C 1.46499 * 119.99901 * 64.99385 * 5 2 1 7 7 C 1.53004 * 109.46929 * 165.00312 * 6 5 2 8 8 C 1.50700 * 109.47237 * 180.02562 * 7 6 5 9 9 O 1.21286 * 119.99804 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00300 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00579 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46824 * 325.00438 * 11 10 8 13 13 C 1.52998 * 109.47341 * 84.99728 * 11 10 8 14 14 C 1.53001 * 109.47586 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.46855 * 300.00505 * 14 13 11 16 16 C 1.52998 * 109.47470 * 59.99798 * 15 14 13 17 17 C 1.52994 * 109.47443 * 204.99985 * 11 10 8 18 18 H 1.08995 * 109.47674 * 299.99764 * 17 11 10 19 19 C 1.52998 * 109.47095 * 59.99968 * 17 11 10 20 20 N 1.46506 * 109.47237 * 184.99775 * 19 17 11 21 21 C 1.36939 * 120.00073 * 179.72302 * 20 19 17 22 22 H 1.08004 * 119.99859 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99849 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00455 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00168 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46615 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47374 * 119.99782 * 25 23 21 28 28 H 1.48495 * 109.47187 * 240.00172 * 25 23 21 29 29 H 1.09004 * 109.46692 * 308.37387 * 1 2 3 30 30 H 1.09001 * 109.47295 * 68.37488 * 1 2 3 31 31 H 1.09004 * 109.47181 * 188.38051 * 1 2 3 32 32 H 0.96998 * 119.99801 * 244.99992 * 5 2 1 33 33 H 1.08997 * 109.47137 * 45.00737 * 6 5 2 34 34 H 1.08993 * 109.47758 * 285.00421 * 6 5 2 35 35 H 1.08990 * 109.47201 * 60.00188 * 7 6 5 36 36 H 1.08999 * 109.47062 * 300.00167 * 7 6 5 37 37 H 0.97003 * 119.99751 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47186 * 300.00830 * 13 11 10 39 39 H 1.08999 * 109.46837 * 60.00131 * 13 11 10 40 40 H 1.09008 * 109.46644 * 60.00133 * 14 13 11 41 41 H 1.08995 * 109.47001 * 180.02562 * 14 13 11 42 42 H 1.09005 * 109.47048 * 180.02562 * 15 14 13 43 43 H 1.09008 * 109.47190 * 299.99293 * 15 14 13 44 44 H 1.09000 * 109.46704 * 180.02562 * 16 15 14 45 45 H 1.08991 * 109.47281 * 59.99838 * 16 15 14 46 46 H 1.09001 * 109.47671 * 65.00115 * 19 17 11 47 47 H 1.08998 * 109.47454 * 305.00112 * 19 17 11 48 48 H 0.97005 * 119.99811 * 0.02562 * 20 19 17 49 49 H 0.97000 * 120.00679 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 7 2.2273 -0.5910 1.4907 6 6 1.8907 -1.9706 1.8508 7 6 2.6875 -2.3830 3.0902 8 6 2.3419 -3.8023 3.4603 9 8 1.5371 -4.4228 2.7982 10 7 2.9262 -4.3819 4.5275 11 6 2.5898 -5.7615 4.8876 12 1 1.5376 -5.9471 4.6717 13 6 3.4550 -6.7264 4.0744 14 6 3.1033 -8.1672 4.4501 15 6 3.3631 -8.3831 5.9422 16 6 2.4978 -7.4183 6.7555 17 6 2.8501 -5.9770 6.3798 18 1 3.9022 -5.7915 6.5957 19 6 1.9848 -5.0122 7.1930 20 7 2.3201 -5.1347 8.6139 21 6 1.6735 -4.3596 9.5393 22 1 0.9160 -3.6583 9.2216 23 6 1.9915 -4.4753 10.8854 24 7 2.9143 -5.3304 11.2726 25 14 1.1090 -3.4186 12.1479 26 1 0.1232 -2.5461 11.4607 27 1 0.4042 -4.2929 13.1195 28 1 2.0983 -2.5763 12.8668 29 1 -0.3633 0.6380 0.8057 30 1 -0.3634 0.3787 -0.9553 31 1 -0.3634 -1.0167 0.1498 32 1 2.6921 -0.0236 2.1255 33 1 2.1393 -2.6333 1.0219 34 1 0.8243 -2.0405 2.0646 35 1 2.4390 -1.7203 3.9190 36 1 3.7541 -2.3131 2.8763 37 1 3.5696 -3.8855 5.0572 38 1 3.2697 -6.5728 3.0113 39 1 4.5072 -6.5408 4.2902 40 1 2.0511 -8.3525 4.2339 41 1 3.7200 -8.8545 3.8710 42 1 3.1130 -9.4098 6.2098 43 1 4.4154 -8.1979 6.1584 44 1 2.6834 -7.5719 7.8185 45 1 1.4457 -7.6035 6.5394 46 1 0.9326 -5.2555 7.0458 47 1 2.1711 -3.9904 6.8625 48 1 3.0033 -5.7618 8.8987 49 1 3.1368 -5.4110 12.2133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722937404.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:53 Heat of formation + Delta-G solvation = -151.331122 kcal Electronic energy + Delta-G solvation = -28802.675182 eV Core-core repulsion = 24696.877049 eV Total energy + Delta-G solvation = -4105.798133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21325 -39.45172 -38.16314 -37.03282 -36.60248 -36.36807 -35.14866 -33.66486 -31.72179 -31.20031 -30.26007 -29.91349 -26.94327 -24.91398 -24.70674 -22.99531 -21.96213 -21.39235 -20.82596 -20.33763 -19.25017 -18.68450 -17.90655 -17.40584 -17.18354 -16.98587 -16.73878 -16.55682 -15.77961 -15.62389 -15.56654 -15.15407 -15.05154 -14.96053 -14.64212 -14.50095 -14.08563 -13.97024 -13.89421 -13.63046 -13.32627 -13.28276 -13.19892 -13.07698 -12.95041 -12.77052 -12.67104 -12.63374 -12.51984 -12.16870 -12.05569 -11.94954 -11.90519 -11.84093 -11.50440 -11.32300 -11.10970 -10.94706 -10.72727 -10.40997 -9.92856 -8.96649 -7.94044 -5.21842 -0.65408 1.48050 1.48717 1.58299 1.70052 1.72355 2.32849 2.56512 2.89921 3.29771 3.39905 3.58141 3.67424 3.80038 3.93433 4.02406 4.06488 4.12426 4.16621 4.21740 4.29281 4.41759 4.49123 4.52374 4.54208 4.56169 4.59573 4.64469 4.88408 4.90604 4.91999 4.97412 5.07191 5.12046 5.15204 5.20062 5.26874 5.32425 5.33706 5.46020 5.50284 5.54467 5.65375 6.13357 6.28582 6.61652 7.30463 7.35603 8.11803 8.35352 9.29452 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.002374 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.589993 B =11789.407295 C =14174.550906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.628 3.372 3 O -0.997 6.997 4 O -1.003 7.003 5 N -1.114 6.114 6 C 0.127 3.873 7 C -0.144 4.144 8 C 0.514 3.486 9 O -0.581 6.581 10 N -0.716 5.716 11 C 0.162 3.838 12 H 0.068 0.932 13 C -0.119 4.119 14 C -0.111 4.111 15 C -0.114 4.114 16 C -0.106 4.106 17 C -0.085 4.085 18 H 0.078 0.922 19 C 0.160 3.840 20 N -0.741 5.741 21 C -0.241 4.241 22 H 0.072 0.928 23 C -0.074 4.074 24 N -0.967 5.967 25 Si 0.969 3.031 26 H -0.267 1.267 27 H -0.296 1.296 28 H -0.293 1.293 29 H 0.150 0.850 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.427 0.573 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.412 0.588 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.005 0.995 47 H 0.029 0.971 48 H 0.375 0.625 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 5.525 -21.985 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.724 3.276 3 O -0.988 6.988 4 O -0.993 6.993 5 N -0.875 5.875 6 C 0.000 4.000 7 C -0.185 4.185 8 C 0.301 3.699 9 O -0.461 6.461 10 N -0.367 5.367 11 C 0.056 3.944 12 H 0.087 0.913 13 C -0.157 4.157 14 C -0.149 4.149 15 C -0.152 4.152 16 C -0.144 4.144 17 C -0.104 4.104 18 H 0.096 0.904 19 C 0.034 3.966 20 N -0.384 5.384 21 C -0.373 4.373 22 H 0.090 0.910 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.799 3.201 26 H -0.192 1.192 27 H -0.223 1.223 28 H -0.220 1.220 29 H 0.168 0.832 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.263 0.737 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.249 0.751 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.023 0.977 47 H 0.046 0.954 48 H 0.208 0.792 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.216 5.377 -23.225 23.871 hybrid contribution -0.350 0.477 2.069 2.152 sum -1.566 5.854 -21.157 22.008 Atomic orbital electron populations 1.30362 1.23870 1.13345 1.13463 1.04029 0.78880 0.72145 0.72543 1.93574 1.79863 1.39191 1.86167 1.93569 1.79104 1.62729 1.63862 1.55311 1.74953 1.21017 1.36265 1.21012 1.00099 0.81191 0.97652 1.21828 1.04137 0.92470 1.00094 1.20958 0.79869 0.89350 0.79683 1.90696 1.35966 1.66573 1.52856 1.46083 1.45543 1.14807 1.30223 1.20796 0.99513 0.81348 0.92708 0.91338 1.21827 0.99973 0.94705 0.99221 1.21470 1.01841 0.95809 0.95787 1.21539 0.99863 0.98980 0.94802 1.21444 0.99821 0.93542 0.99596 1.21432 1.00261 0.95709 0.93035 0.90409 1.20778 0.95629 0.96733 0.83471 1.42554 1.46299 1.47650 1.01860 1.19612 1.14852 1.14563 0.88246 0.90979 1.25499 1.00652 1.01451 0.99004 1.69806 1.36134 1.40620 1.15286 0.85132 0.77762 0.78020 0.79192 1.19164 1.22323 1.21970 0.83189 0.83724 0.84043 0.73715 0.90815 0.89978 0.85638 0.85989 0.75150 0.92122 0.90838 0.92248 0.90179 0.91205 0.91529 0.93242 0.92709 0.97733 0.95363 0.79198 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.71 10.89 113.37 1.23 -2.48 16 2 S 2.63 34.99 6.10 -56.49 -0.34 34.65 16 3 O -1.00 -20.19 18.08 -127.65 -2.31 -22.50 16 4 O -1.00 -22.30 17.50 -127.65 -2.23 -24.53 16 5 N -1.11 -11.74 5.89 -187.49 -1.10 -12.84 16 6 C 0.13 1.70 5.42 86.38 0.47 2.17 16 7 C -0.14 -1.80 5.84 29.85 0.17 -1.63 16 8 C 0.51 10.75 7.79 87.66 0.68 11.44 16 9 O -0.58 -16.40 15.64 -3.05 -0.05 -16.45 16 10 N -0.72 -14.76 4.30 -442.55 -1.91 -16.66 16 11 C 0.16 3.95 1.90 44.99 0.09 4.04 16 12 H 0.07 1.98 7.58 -2.39 -0.02 1.96 16 13 C -0.12 -2.50 5.49 30.59 0.17 -2.33 16 14 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 15 C -0.11 -2.57 5.92 30.59 0.18 -2.39 16 16 C -0.11 -3.09 5.08 30.61 0.16 -2.94 16 17 C -0.09 -2.44 1.80 -10.78 -0.02 -2.46 16 18 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 19 C 0.16 5.97 5.56 86.38 0.48 6.45 16 20 N -0.74 -35.73 5.33 -343.44 -1.83 -37.56 16 21 C -0.24 -13.02 9.99 84.03 0.84 -12.18 16 22 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 23 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 24 N -0.97 -57.68 13.06 21.65 0.28 -57.40 16 25 Si 0.97 45.07 29.55 68.60 2.03 47.10 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 29 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.43 3.06 8.62 -96.75 -0.83 2.23 16 33 H 0.07 1.25 7.65 -2.39 -0.02 1.23 16 34 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 35 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.41 7.05 8.39 -92.71 -0.78 6.27 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.05 1.74 7.18 -2.39 -0.02 1.72 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 47 H 0.03 1.01 7.30 -2.39 -0.02 0.99 16 48 H 0.38 19.25 6.85 -92.70 -0.64 18.61 16 49 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -80.45 405.70 -3.65 -84.10 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: -1.28 Total: 30.09 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 5.10 Total: -8.00 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -4.56 Total: -124.45 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: -4.59 Total: -63.48 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 34.99 SS G_CDS: -0.34 Total: 34.65 kcal Total: -80.45 -3.65 -84.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722937404.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.236 kcal (2) G-P(sol) polarization free energy of solvation -80.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds