Wall clock time and date at job start Wed Apr 1 2020 05:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 120.00115 * 2 1 4 4 H 1.48501 * 109.47458 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47157 * 300.00537 * 3 2 1 6 6 H 1.48504 * 109.47056 * 60.00330 * 3 2 1 7 7 C 1.38949 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00610 * 179.97438 * 7 2 1 9 9 N 1.37105 * 119.99594 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99718 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00342 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99537 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46606 * 179.97438 * 12 10 9 14 14 C 1.47220 * 110.99552 * 170.00061 * 13 12 10 15 15 C 1.54003 * 107.56019 * 236.70639 * 14 13 12 16 16 H 1.08994 * 110.24259 * 224.45234 * 15 14 13 17 17 C 1.50908 * 108.76083 * 103.44762 * 15 14 13 18 18 C 1.53293 * 108.75469 * 187.49830 * 17 15 14 19 19 C 1.52991 * 107.94471 * 68.15609 * 18 17 15 20 20 N 1.45184 * 110.53091 * 308.78956 * 19 18 17 21 21 C 1.34779 * 116.70875 * 207.73079 * 20 19 18 22 22 O 1.21595 * 120.00121 * 354.92448 * 21 20 19 23 23 C 1.47423 * 119.99454 * 174.92586 * 21 20 19 24 24 C 1.41286 * 126.42100 * 11.35987 * 23 21 20 25 25 N 1.30446 * 108.02592 * 179.85565 * 24 23 21 26 26 N 1.39932 * 108.89830 * 0.40476 * 25 24 23 27 27 H 0.96997 * 125.75936 * 179.73904 * 26 25 24 28 28 C 1.34260 * 108.48963 * 359.74211 * 26 25 24 29 29 C 1.44053 * 126.57770 * 27.71058 * 20 19 18 30 30 H 1.09000 * 109.20399 * 220.85278 * 29 20 19 31 31 C 1.47334 * 111.00124 * 48.45756 * 13 12 10 32 32 H 0.97003 * 120.00259 * 359.97438 * 1 2 3 33 33 H 0.96999 * 120.00193 * 359.97438 * 9 7 2 34 34 H 1.09000 * 109.47027 * 59.99761 * 12 10 9 35 35 H 1.09003 * 109.47045 * 299.99572 * 12 10 9 36 36 H 1.08996 * 109.83497 * 356.20918 * 14 13 12 37 37 H 1.08998 * 109.83237 * 117.20416 * 14 13 12 38 38 H 1.08995 * 109.81982 * 67.61051 * 17 15 14 39 39 H 1.08998 * 109.54320 * 307.22447 * 17 15 14 40 40 H 1.09001 * 109.76714 * 308.54473 * 18 17 15 41 41 H 1.09005 * 109.76832 * 187.76443 * 18 17 15 42 42 H 1.08994 * 109.26475 * 188.51875 * 19 18 17 43 43 H 1.09003 * 109.26115 * 69.05840 * 19 18 17 44 44 H 1.08005 * 125.98820 * 359.97438 * 24 23 21 45 45 H 1.08008 * 126.29389 * 180.02562 * 28 26 25 46 46 H 1.08997 * 110.10108 * 259.88666 * 31 13 12 47 47 H 1.09008 * 110.09867 * 21.43040 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2438 -4.8630 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 1.5126 -7.2601 0.2354 15 6 2.1632 -7.9134 1.4689 16 1 2.3400 -8.9731 1.2852 17 6 1.2458 -7.7343 2.6536 18 6 1.9711 -8.2148 3.9158 19 6 3.1193 -7.2440 4.1980 20 7 3.9313 -7.0563 3.0092 21 6 5.2261 -6.7369 3.2042 22 8 5.6383 -6.5290 4.3291 23 6 6.1425 -6.6395 2.0535 24 6 5.7772 -6.6295 0.6887 25 7 6.8675 -6.5282 -0.0202 26 7 7.9670 -6.4787 0.8439 27 1 8.8963 -6.4071 0.5752 28 6 7.5188 -6.5470 2.1076 29 6 3.4929 -7.1775 1.6423 30 1 4.2625 -7.6876 1.0629 31 6 3.2350 -5.7884 1.0269 32 1 -0.4851 0.8401 0.0004 33 1 0.3534 -2.3907 -0.0016 34 1 0.6175 -4.9205 -0.8924 35 1 0.6169 -4.9209 0.8876 36 1 0.4541 -7.0830 0.4258 37 1 1.6300 -7.9094 -0.6322 38 1 0.3375 -8.3194 2.5095 39 1 0.9883 -6.6805 2.7594 40 1 2.3673 -9.2173 3.7541 41 1 1.2793 -8.2224 4.7582 42 1 3.7409 -7.6452 4.9984 43 1 2.7094 -6.2830 4.5090 44 1 4.7713 -6.6926 0.3005 45 1 8.1238 -6.5319 3.0022 46 1 4.1483 -5.4047 0.5723 47 1 2.8797 -5.0987 1.7926 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724647456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:48 Heat of formation + Delta-G solvation = 62.815960 kcal Electronic energy + Delta-G solvation = -32214.046854 eV Core-core repulsion = 28014.383635 eV Total energy + Delta-G solvation = -4199.663219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.91442 -40.48721 -38.89540 -37.84074 -35.72520 -34.14922 -33.88619 -32.04596 -31.32352 -31.08426 -30.09563 -28.45515 -27.27577 -25.38429 -24.21354 -23.30748 -22.30099 -22.06613 -20.84782 -20.24157 -19.23660 -18.94881 -17.99550 -17.83642 -16.81318 -16.13128 -16.02052 -15.66290 -15.53215 -14.84215 -14.61715 -14.47545 -14.40497 -14.25982 -14.01097 -13.78917 -13.72763 -13.14850 -13.09251 -12.97185 -12.66480 -12.31324 -12.01698 -11.80545 -11.67825 -11.53378 -11.23325 -11.20370 -11.11002 -11.04932 -10.79755 -10.62183 -10.60289 -10.33592 -10.22694 -9.77460 -9.64737 -9.51202 -8.86619 -8.59149 -8.33885 -7.97702 -7.86485 -6.42390 -3.82859 1.51558 2.21767 2.70055 3.01387 3.16233 3.27113 3.34492 3.44453 3.88694 4.06423 4.24774 4.28364 4.51404 4.57745 4.75232 4.76071 4.77286 4.90409 5.00204 5.08307 5.19451 5.23944 5.30370 5.30853 5.35857 5.48191 5.51330 5.57701 5.67903 5.70867 5.79928 5.84375 5.89411 5.92687 6.01511 6.15265 6.20639 6.27324 6.36574 6.47617 6.72160 7.04594 7.15938 7.25974 7.38072 7.52108 7.55338 8.05453 8.28324 8.60191 9.17506 9.52984 10.04022 10.75352 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010083 B = 0.003710 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.293140 B = 7545.597807 C = 8789.496368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.439 3.561 11 O -0.579 6.579 12 C 0.041 3.959 13 N -0.507 5.507 14 C 0.044 3.956 15 C -0.110 4.110 16 H 0.087 0.913 17 C -0.116 4.116 18 C -0.129 4.129 19 C 0.120 3.880 20 N -0.586 5.586 21 C 0.591 3.409 22 O -0.552 6.552 23 C -0.296 4.296 24 C 0.052 3.948 25 N -0.291 5.291 26 N -0.467 5.467 27 H 0.442 0.558 28 C 0.130 3.870 29 C 0.104 3.896 30 H 0.110 0.890 31 C 0.030 3.970 32 H 0.271 0.729 33 H 0.392 0.608 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.235 0.765 45 H 0.189 0.811 46 H 0.121 0.879 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 -19.287 4.628 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.224 3.776 11 O -0.464 6.464 12 C -0.090 4.090 13 N -0.232 5.232 14 C -0.084 4.084 15 C -0.129 4.129 16 H 0.106 0.894 17 C -0.154 4.154 18 C -0.167 4.167 19 C -0.002 4.002 20 N -0.318 5.318 21 C 0.381 3.619 22 O -0.431 6.431 23 C -0.311 4.311 24 C -0.134 4.134 25 N -0.112 5.112 26 N -0.171 5.171 27 H 0.286 0.714 28 C -0.023 4.023 29 C -0.002 4.002 30 H 0.127 0.873 31 C -0.099 4.099 32 H 0.081 0.919 33 H 0.225 0.775 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.250 0.750 45 H 0.205 0.795 46 H 0.138 0.862 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.359 -18.947 3.544 20.298 hybrid contribution -0.657 1.127 1.433 1.938 sum 5.703 -17.820 4.978 19.361 Atomic orbital electron populations 1.69613 1.05932 1.28056 1.50660 1.25245 0.95609 0.99694 0.97301 0.85824 0.79753 0.81214 0.77713 1.19239 1.20711 1.20765 1.19743 0.93372 0.82166 1.47392 0.87875 1.41849 1.09171 1.04596 1.64159 1.19753 0.88451 0.84739 0.84655 1.90522 1.13589 1.86779 1.55475 1.22155 0.94387 0.90914 1.01552 1.63107 1.12155 1.00783 1.47113 1.22982 0.97539 0.91462 0.96444 1.21710 0.94306 1.00560 0.96354 0.89424 1.21304 0.97916 1.02157 0.93973 1.21864 0.97169 0.99112 0.98591 1.21134 0.92733 0.99485 0.86894 1.46507 1.09574 1.69953 1.05732 1.17396 0.81379 0.75687 0.87420 1.90733 1.76888 1.50856 1.24590 1.20249 0.93322 1.23494 0.94036 1.26160 1.00025 0.95889 0.91346 1.77305 0.92890 1.24128 1.16838 1.46329 1.09883 1.56782 1.04147 0.71417 1.22953 0.94872 0.95103 0.89398 1.22033 0.97755 0.97894 0.82471 0.87326 1.23800 0.98414 0.94184 0.93466 0.91924 0.77496 0.88996 0.93371 0.91972 0.89970 0.90974 0.91482 0.91204 0.90283 0.89726 0.92111 0.74966 0.79454 0.86212 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 10 C 0.44 10.11 7.20 -10.98 -0.08 10.03 16 11 O -0.58 -15.11 13.14 5.55 0.07 -15.03 16 12 C 0.04 0.71 5.32 -4.97 -0.03 0.68 16 13 N -0.51 -7.80 5.19 -234.05 -1.21 -9.02 16 14 C 0.04 0.49 6.47 -3.13 -0.02 0.47 16 15 C -0.11 -1.10 2.93 -91.16 -0.27 -1.37 16 16 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 17 C -0.12 -1.09 4.84 -27.63 -0.13 -1.22 16 18 C -0.13 -1.14 6.13 -26.58 -0.16 -1.31 16 19 C 0.12 1.43 5.93 -4.75 -0.03 1.40 16 20 N -0.59 -7.93 2.84 -169.53 -0.48 -8.41 16 21 C 0.59 9.19 7.38 -12.52 -0.09 9.09 16 22 O -0.55 -9.80 16.25 5.28 0.09 -9.72 16 23 C -0.30 -4.25 5.87 -105.07 -0.62 -4.86 16 24 C 0.05 0.77 7.99 -16.98 -0.14 0.64 16 25 N -0.29 -4.26 12.63 30.86 0.39 -3.87 16 26 N -0.47 -5.08 7.29 30.85 0.22 -4.85 16 27 H 0.44 3.04 8.96 -182.73 -1.64 1.41 16 28 C 0.13 1.49 11.84 -16.56 -0.20 1.29 16 29 C 0.10 1.31 2.33 -68.67 -0.16 1.15 16 30 H 0.11 1.32 4.49 -51.93 -0.23 1.09 16 31 C 0.03 0.48 3.43 -3.01 -0.01 0.47 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 34 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.05 0.76 7.96 -51.93 -0.41 0.34 16 36 H 0.06 0.63 7.01 -51.93 -0.36 0.27 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 40 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.02 7.28 -51.93 -0.38 0.65 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.24 3.41 2.97 -52.48 -0.16 3.25 16 45 H 0.19 1.57 8.06 -52.48 -0.42 1.15 16 46 H 0.12 2.29 4.01 -51.93 -0.21 2.08 16 47 H 0.06 1.13 7.11 -51.92 -0.37 0.77 16 LS Contribution 365.63 15.07 5.51 5.51 Total: -1.00 -34.61 365.63 -9.33 -43.94 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -7.39 Total: 14.57 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -2.17 Total: 8.58 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -0.41 Total: -64.06 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.16 Total: -24.75 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.61 -9.33 -43.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724647456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.753 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds