Wall clock time and date at job start Wed Apr 1 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 120.00115 * 2 1 4 4 H 1.48501 * 109.47458 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47157 * 300.00537 * 3 2 1 6 6 H 1.48504 * 109.47056 * 60.00330 * 3 2 1 7 7 C 1.38949 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00610 * 179.97438 * 7 2 1 9 9 N 1.37105 * 119.99594 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99718 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00342 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99537 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46606 * 179.97438 * 12 10 9 14 14 C 1.47220 * 110.99552 * 170.00061 * 13 12 10 15 15 C 1.54003 * 107.56019 * 236.70639 * 14 13 12 16 16 H 1.08994 * 110.24259 * 224.45234 * 15 14 13 17 17 C 1.50908 * 108.76083 * 103.44762 * 15 14 13 18 18 C 1.53293 * 108.75469 * 187.49830 * 17 15 14 19 19 C 1.52991 * 107.94471 * 68.15609 * 18 17 15 20 20 N 1.45184 * 110.53091 * 308.78956 * 19 18 17 21 21 C 1.34779 * 116.70875 * 207.73079 * 20 19 18 22 22 O 1.21595 * 120.00121 * 354.92448 * 21 20 19 23 23 C 1.47423 * 119.99454 * 174.92586 * 21 20 19 24 24 C 1.41286 * 126.42100 * 11.35987 * 23 21 20 25 25 N 1.30446 * 108.02592 * 179.85565 * 24 23 21 26 26 N 1.39932 * 108.89830 * 0.40476 * 25 24 23 27 27 H 0.96997 * 125.75936 * 179.73904 * 26 25 24 28 28 C 1.34260 * 108.48963 * 359.74211 * 26 25 24 29 29 C 1.44053 * 126.57770 * 27.71058 * 20 19 18 30 30 H 1.09000 * 109.20399 * 220.85278 * 29 20 19 31 31 C 1.47334 * 111.00124 * 48.45756 * 13 12 10 32 32 H 0.97003 * 120.00259 * 359.97438 * 1 2 3 33 33 H 0.96999 * 120.00193 * 359.97438 * 9 7 2 34 34 H 1.09000 * 109.47027 * 59.99761 * 12 10 9 35 35 H 1.09003 * 109.47045 * 299.99572 * 12 10 9 36 36 H 1.08996 * 109.83497 * 356.20918 * 14 13 12 37 37 H 1.08998 * 109.83237 * 117.20416 * 14 13 12 38 38 H 1.08995 * 109.81982 * 67.61051 * 17 15 14 39 39 H 1.08998 * 109.54320 * 307.22447 * 17 15 14 40 40 H 1.09001 * 109.76714 * 308.54473 * 18 17 15 41 41 H 1.09005 * 109.76832 * 187.76443 * 18 17 15 42 42 H 1.08994 * 109.26475 * 188.51875 * 19 18 17 43 43 H 1.09003 * 109.26115 * 69.05840 * 19 18 17 44 44 H 1.08005 * 125.98820 * 359.97438 * 24 23 21 45 45 H 1.08008 * 126.29389 * 180.02562 * 28 26 25 46 46 H 1.08997 * 110.10108 * 259.88666 * 31 13 12 47 47 H 1.09008 * 110.09867 * 21.43040 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2438 -4.8630 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 1.5126 -7.2601 0.2354 15 6 2.1632 -7.9134 1.4689 16 1 2.3400 -8.9731 1.2852 17 6 1.2458 -7.7343 2.6536 18 6 1.9711 -8.2148 3.9158 19 6 3.1193 -7.2440 4.1980 20 7 3.9313 -7.0563 3.0092 21 6 5.2261 -6.7369 3.2042 22 8 5.6383 -6.5290 4.3291 23 6 6.1425 -6.6395 2.0535 24 6 5.7772 -6.6295 0.6887 25 7 6.8675 -6.5282 -0.0202 26 7 7.9670 -6.4787 0.8439 27 1 8.8963 -6.4071 0.5752 28 6 7.5188 -6.5470 2.1076 29 6 3.4929 -7.1775 1.6423 30 1 4.2625 -7.6876 1.0629 31 6 3.2350 -5.7884 1.0269 32 1 -0.4851 0.8401 0.0004 33 1 0.3534 -2.3907 -0.0016 34 1 0.6175 -4.9205 -0.8924 35 1 0.6169 -4.9209 0.8876 36 1 0.4541 -7.0830 0.4258 37 1 1.6300 -7.9094 -0.6322 38 1 0.3375 -8.3194 2.5095 39 1 0.9883 -6.6805 2.7594 40 1 2.3673 -9.2173 3.7541 41 1 1.2793 -8.2224 4.7582 42 1 3.7409 -7.6452 4.9984 43 1 2.7094 -6.2830 4.5090 44 1 4.7713 -6.6926 0.3005 45 1 8.1238 -6.5319 3.0022 46 1 4.1483 -5.4047 0.5723 47 1 2.8797 -5.0987 1.7926 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724647456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:47 Heat of formation + Delta-G solvation = 34.872561 kcal Electronic energy + Delta-G solvation = -32215.258571 eV Core-core repulsion = 28014.383635 eV Total energy + Delta-G solvation = -4200.874936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.97379 -41.54284 -40.35634 -39.34735 -36.94261 -35.88836 -35.08424 -33.39275 -33.03755 -32.22120 -31.15238 -29.53994 -28.67686 -26.76444 -25.73599 -24.29221 -23.43034 -23.13311 -21.93379 -21.25777 -20.95000 -20.03544 -19.80316 -19.02009 -17.93220 -17.55741 -17.19047 -16.95944 -16.66181 -16.58129 -16.01098 -15.87362 -15.60208 -15.41879 -15.28128 -14.98270 -14.82892 -14.46257 -14.13277 -14.11946 -13.84257 -13.73102 -13.51299 -13.42493 -12.93470 -12.85009 -12.63808 -12.43934 -12.42424 -12.20372 -12.16693 -12.06895 -11.75278 -11.53449 -11.49598 -11.40938 -10.92600 -10.70691 -10.20509 -10.02071 -9.95569 -9.64859 -9.12512 -8.48506 -5.96327 0.50748 1.08693 1.33318 1.38470 1.52175 1.79864 1.98847 2.04460 2.26796 2.29759 2.90142 3.18883 3.25020 3.47518 3.55533 3.60689 3.81959 3.87805 3.92697 3.95895 4.09938 4.18515 4.26812 4.34441 4.37759 4.47412 4.49194 4.55142 4.56640 4.69695 4.73393 4.85841 4.89425 4.96496 5.02735 5.05759 5.21145 5.24069 5.27641 5.39425 5.43858 5.67303 5.84545 5.98965 6.16221 6.22706 6.26935 6.50152 6.59416 7.12032 7.12788 7.55060 8.11187 8.69241 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010083 B = 0.003710 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.293140 B = 7545.597807 C = 8789.496368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.988 3.012 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.329 4.329 8 H 0.075 0.925 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.614 6.614 12 C 0.054 3.946 13 N -0.518 5.518 14 C 0.043 3.957 15 C -0.102 4.102 16 H 0.121 0.879 17 C -0.115 4.115 18 C -0.118 4.118 19 C 0.113 3.887 20 N -0.583 5.583 21 C 0.583 3.417 22 O -0.584 6.584 23 C -0.328 4.328 24 C 0.049 3.951 25 N -0.322 5.322 26 N -0.449 5.449 27 H 0.459 0.541 28 C 0.149 3.851 29 C 0.111 3.889 30 H 0.117 0.883 31 C 0.042 3.958 32 H 0.277 0.723 33 H 0.396 0.604 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.041 0.959 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.040 0.960 44 H 0.230 0.770 45 H 0.221 0.779 46 H 0.087 0.913 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.068 -21.288 4.553 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.202 1.202 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.459 4.459 8 H 0.093 0.907 9 N -0.211 5.211 10 C 0.223 3.777 11 O -0.500 6.500 12 C -0.077 4.077 13 N -0.243 5.243 14 C -0.084 4.084 15 C -0.121 4.121 16 H 0.139 0.861 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.009 4.009 20 N -0.313 5.313 21 C 0.374 3.626 22 O -0.466 6.466 23 C -0.343 4.343 24 C -0.137 4.137 25 N -0.143 5.143 26 N -0.155 5.155 27 H 0.308 0.692 28 C -0.006 4.006 29 C 0.006 3.994 30 H 0.135 0.865 31 C -0.087 4.087 32 H 0.087 0.913 33 H 0.230 0.770 34 H 0.134 0.866 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.060 0.940 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.058 0.942 44 H 0.245 0.755 45 H 0.238 0.762 46 H 0.105 0.895 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 5.579 -20.975 3.437 21.975 hybrid contribution -0.340 1.743 1.454 2.295 sum 5.239 -19.232 4.891 20.524 Atomic orbital electron populations 1.69664 1.06694 1.29159 1.50515 1.25960 0.96506 1.02182 0.96398 0.84943 0.77924 0.77477 0.78428 1.20184 1.19340 1.19626 1.19628 0.92490 0.84086 1.49714 0.90711 1.41910 1.09257 1.04675 1.65246 1.20872 0.88436 0.86209 0.82214 1.90512 1.15557 1.87679 1.56210 1.22054 0.94102 0.88124 1.03400 1.63083 1.12253 1.01946 1.47045 1.23165 0.98086 0.89291 0.97901 1.21777 0.92381 1.01756 0.96208 0.86134 1.21331 0.98938 1.01190 0.93764 1.21844 0.95944 0.98642 0.99152 1.21272 0.93687 0.99532 0.86362 1.46607 1.09184 1.68987 1.06546 1.17703 0.82238 0.75323 0.87338 1.90697 1.77623 1.52601 1.25655 1.20384 0.94561 1.25806 0.93556 1.26085 1.00034 0.95981 0.91583 1.77218 0.93746 1.25248 1.18063 1.46308 1.10206 1.55364 1.03629 0.69238 1.23437 0.94258 0.92551 0.90331 1.21967 0.99810 0.95885 0.81748 0.86548 1.23475 0.97271 0.95540 0.92377 0.91310 0.77036 0.86627 0.91617 0.90284 0.87716 0.87966 0.93981 0.89510 0.88404 0.90129 0.94163 0.75497 0.76215 0.89545 0.96518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.09 13.05 21.66 0.28 -49.81 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 0.99 44.01 29.55 68.60 2.03 46.04 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 8 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 9 N -0.57 -29.75 5.29 -306.97 -1.62 -31.37 16 10 C 0.44 20.78 7.20 87.66 0.63 21.41 16 11 O -0.61 -33.77 13.14 -3.05 -0.04 -33.81 16 12 C 0.05 1.84 5.32 85.56 0.45 2.29 16 13 N -0.52 -15.62 5.19 -894.41 -4.64 -20.26 16 14 C 0.04 0.82 6.47 86.58 0.56 1.38 16 15 C -0.10 -1.75 2.93 -11.15 -0.03 -1.78 16 16 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 17 C -0.11 -1.81 4.84 30.01 0.15 -1.67 16 18 C -0.12 -1.79 6.13 30.69 0.19 -1.60 16 19 C 0.11 2.70 5.93 86.62 0.51 3.21 16 20 N -0.58 -15.97 2.84 -808.54 -2.30 -18.27 16 21 C 0.58 18.64 7.38 86.66 0.64 19.28 16 22 O -0.58 -21.39 16.25 -4.02 -0.07 -21.45 16 23 C -0.33 -9.57 5.87 -20.15 -0.12 -9.69 16 24 C 0.05 1.49 7.99 85.65 0.68 2.17 16 25 N -0.32 -9.48 12.63 -56.28 -0.71 -10.19 16 26 N -0.45 -9.39 7.29 -56.31 -0.41 -9.80 16 27 H 0.46 5.69 8.96 -213.43 -1.91 3.78 16 28 C 0.15 3.30 11.84 84.28 1.00 4.30 16 29 C 0.11 2.75 2.33 45.81 0.11 2.86 16 30 H 0.12 2.77 4.49 -2.39 -0.01 2.76 16 31 C 0.04 1.44 3.43 86.59 0.30 1.73 16 32 H 0.28 14.12 8.31 -92.71 -0.77 13.34 16 33 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 34 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 35 H 0.07 2.01 7.96 -2.39 -0.02 1.99 16 36 H 0.08 1.30 7.01 -2.39 -0.02 1.28 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.04 0.89 8.08 -2.39 -0.02 0.87 16 40 H 0.09 1.08 8.12 -2.39 -0.02 1.06 16 41 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.08 1.97 7.28 -2.39 -0.02 1.95 16 43 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.23 6.91 2.97 -2.91 -0.01 6.90 16 45 H 0.22 3.29 8.06 -2.91 -0.02 3.26 16 46 H 0.09 3.53 4.01 -2.39 -0.01 3.52 16 47 H 0.02 0.68 7.11 -2.38 -0.02 0.67 16 Total: -1.00 -79.70 365.63 -2.72 -82.42 By element: Atomic # 1 Polarization: 42.57 SS G_CDS: -1.59 Total: 40.97 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 6.35 Total: 25.54 kcal Atomic # 7 Polarization: -130.31 SS G_CDS: -9.40 Total: -139.71 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -0.11 Total: -55.27 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -79.70 -2.72 -82.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724647456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.289 kcal (2) G-P(sol) polarization free energy of solvation -79.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds