Wall clock time and date at job start Wed Apr 1 2020 04:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99942 * 2 1 4 4 H 1.48501 * 109.47088 * 269.99890 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.00092 * 3 2 1 6 6 H 1.48502 * 109.47297 * 149.99876 * 3 2 1 7 7 C 1.38955 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99722 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47051 * 180.02562 * 12 10 9 14 14 C 1.46907 * 110.99969 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47021 * 179.97438 * 14 13 12 16 16 H 1.08993 * 110.43488 * 305.69987 * 15 14 13 17 17 C 1.54893 * 110.48571 * 68.24530 * 15 14 13 18 18 C 1.55022 * 102.68314 * 156.51399 * 17 15 14 19 19 C 1.54261 * 104.28467 * 322.23038 * 18 17 15 20 20 H 1.09000 * 110.07640 * 264.21474 * 19 18 17 21 21 N 1.46498 * 110.03726 * 142.79947 * 19 18 17 22 22 C 1.34781 * 119.99480 * 87.83458 * 21 19 18 23 23 O 1.21280 * 120.00106 * 359.97438 * 22 21 19 24 24 C 1.50706 * 119.99779 * 180.02562 * 22 21 19 25 25 C 1.53000 * 109.46833 * 179.97438 * 24 22 21 26 26 C 1.53008 * 109.46680 * 179.97438 * 25 24 22 27 27 F 1.39895 * 109.46697 * 174.99919 * 26 25 24 28 28 F 1.39894 * 109.46917 * 295.00137 * 26 25 24 29 29 C 1.53877 * 106.59840 * 23.51929 * 19 18 17 30 30 H 0.97000 * 120.00310 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00208 * 0.26881 * 9 7 2 32 32 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 33 33 H 1.08997 * 109.47392 * 59.99562 * 12 10 9 34 34 H 1.00902 * 110.99727 * 303.94906 * 13 12 10 35 35 H 1.09003 * 109.46987 * 299.99556 * 14 13 12 36 36 H 1.09004 * 109.47143 * 59.99347 * 14 13 12 37 37 H 1.09005 * 110.75008 * 274.93485 * 17 15 14 38 38 H 1.08999 * 110.75464 * 38.29633 * 17 15 14 39 39 H 1.09006 * 110.52296 * 203.48321 * 18 17 15 40 40 H 1.09003 * 110.48350 * 80.95812 * 18 17 15 41 41 H 0.96991 * 120.00615 * 267.83914 * 21 19 18 42 42 H 1.08999 * 109.46725 * 300.00200 * 24 22 21 43 43 H 1.08998 * 109.46650 * 60.00064 * 24 22 21 44 44 H 1.08998 * 109.47269 * 300.00024 * 25 24 22 45 45 H 1.08991 * 109.46966 * 60.00077 * 25 24 22 46 46 H 1.09004 * 109.46744 * 55.00306 * 26 25 24 47 47 H 1.08999 * 110.03414 * 240.71715 * 29 19 18 48 48 H 1.08996 * 110.03871 * 119.28563 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0011 13 7 2.1984 -5.9795 0.0016 14 6 1.4981 -7.2709 0.0016 15 6 2.5231 -8.4068 0.0015 16 1 3.2205 -8.2900 -0.8280 17 6 3.2856 -8.4491 1.3491 18 6 3.7744 -9.9186 1.4176 19 6 2.6091 -10.7355 0.8223 20 1 1.9707 -11.1135 1.6208 21 7 3.1317 -11.8501 0.0280 22 6 3.4052 -13.0295 0.6202 23 8 3.2190 -13.1679 1.8106 24 6 3.9433 -14.1759 -0.1967 25 6 4.1666 -15.3877 0.7103 26 6 4.7124 -16.5518 -0.1192 27 9 5.0238 -17.6215 0.7269 28 9 3.7465 -16.9566 -1.0467 29 6 1.8134 -9.7743 -0.0782 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 -0.0038 32 1 0.6175 -4.9205 0.8914 33 1 0.6168 -4.9209 -0.8885 34 1 2.8332 -5.9128 -0.7798 35 1 0.8730 -7.3452 0.8914 36 1 0.8734 -7.3454 -0.8886 37 1 4.1294 -7.7591 1.3372 38 1 2.6152 -8.2268 2.1793 39 1 3.9575 -10.2127 2.4512 40 1 4.6763 -10.0489 0.8195 41 1 3.2810 -11.7393 -0.9239 42 1 3.2277 -14.4330 -0.9776 43 1 4.8895 -13.8845 -0.6525 44 1 4.8824 -15.1303 1.4910 45 1 3.2207 -15.6792 1.1665 46 1 5.6112 -16.2321 -0.6466 47 1 0.7892 -9.6851 0.2840 48 1 1.8161 -10.1370 -1.1060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725655241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:07 Heat of formation + Delta-G solvation = -202.040502 kcal Electronic energy + Delta-G solvation = -29029.607505 eV Core-core repulsion = 24367.770062 eV Total energy + Delta-G solvation = -4661.837443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.44173 -47.45435 -40.43808 -38.69089 -38.08585 -35.52207 -34.32805 -34.00666 -33.50252 -31.23270 -29.87441 -28.88006 -27.42917 -26.21885 -24.37071 -23.00725 -22.78331 -21.00323 -20.67764 -20.24731 -19.15680 -18.19743 -18.03938 -17.87847 -17.44159 -16.58883 -16.38951 -16.12102 -16.01224 -15.53668 -14.89937 -14.86159 -14.43475 -14.37982 -14.23081 -14.19418 -13.85573 -13.74976 -13.65914 -13.44190 -13.28524 -13.02757 -12.78525 -12.52229 -12.14602 -11.94063 -11.85242 -11.64526 -11.57098 -11.51895 -11.42506 -11.11703 -11.05803 -10.96554 -10.78547 -10.63688 -10.39914 -10.26012 -10.22091 -9.51387 -9.40868 -8.45714 -8.04420 -7.95996 -6.42258 -3.83047 2.20093 2.64067 3.17251 3.26002 3.32050 3.35071 3.70483 3.86818 3.90706 4.02100 4.05013 4.23762 4.27298 4.43418 4.50865 4.55006 4.66731 4.71036 4.85925 5.07438 5.18105 5.21917 5.22160 5.23502 5.25896 5.36240 5.41509 5.41958 5.47993 5.53564 5.70440 5.78168 5.82397 5.91212 5.96298 5.99216 6.22983 6.25329 6.27803 6.32804 7.06752 7.22477 7.54637 7.66751 7.79962 8.05973 8.60966 9.17474 9.54068 10.05566 10.75517 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.046061 B = 0.001238 C = 0.001230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.739286 B =22620.354447 C =22752.249453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.667 5.667 14 C 0.065 3.935 15 C -0.087 4.087 16 H 0.075 0.925 17 C -0.105 4.105 18 C -0.136 4.136 19 C 0.140 3.860 20 H 0.091 0.909 21 N -0.723 5.723 22 C 0.514 3.486 23 O -0.538 6.538 24 C -0.143 4.143 25 C -0.157 4.157 26 C 0.262 3.738 27 F -0.205 7.205 28 F -0.207 7.207 29 C -0.125 4.125 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.348 0.652 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.400 0.600 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.077 0.923 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 -30.437 -3.437 30.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.299 5.299 14 C -0.064 4.064 15 C -0.106 4.106 16 H 0.094 0.906 17 C -0.143 4.143 18 C -0.175 4.175 19 C 0.036 3.964 20 H 0.109 0.891 21 N -0.375 5.375 22 C 0.300 3.700 23 O -0.415 6.415 24 C -0.183 4.183 25 C -0.195 4.195 26 C 0.208 3.792 27 F -0.186 7.186 28 F -0.188 7.188 29 C -0.164 4.164 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.167 0.833 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.235 0.765 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.114 0.886 46 H 0.129 0.871 47 H 0.096 0.904 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.041 -30.386 -1.881 30.859 hybrid contribution -0.632 0.820 -1.467 1.796 sum 4.409 -29.566 -3.348 30.080 Atomic orbital electron populations 1.69611 1.05945 1.28150 1.50641 1.25257 0.95623 0.99707 0.97321 0.85859 0.79270 0.80819 0.78354 1.20445 1.20915 1.19395 1.19707 0.93377 0.82265 1.47589 0.87931 1.41865 1.09192 1.04617 1.64399 1.19829 0.88392 0.84741 0.84421 1.90519 1.13770 1.87084 1.55394 1.21665 0.94379 0.91045 1.01109 1.60061 1.18769 0.99871 1.51179 1.22032 0.95179 0.88924 1.00271 1.21950 0.96989 0.92694 0.99007 0.90631 1.22428 1.00471 0.94725 0.96666 1.22839 0.97644 0.95695 1.01279 1.21704 0.95323 0.85602 0.93800 0.89070 1.46241 1.66628 1.12154 1.12463 1.20446 0.77668 0.83588 0.88285 1.90740 1.52331 1.82912 1.15486 1.21589 1.03854 0.93569 0.99316 1.22412 1.05555 0.92645 0.98895 1.21948 0.90670 0.83685 0.82897 1.93001 1.93511 1.59561 1.72557 1.92993 1.66643 1.91977 1.67202 1.22462 0.99745 0.94630 0.99524 0.91882 0.77476 0.89671 0.94021 0.83328 0.90989 0.95691 0.90356 0.91100 0.91284 0.91435 0.76495 0.87884 0.88095 0.87800 0.88563 0.87116 0.90435 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.46 13.05 55.50 0.72 -23.73 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.24 5.29 -10.96 -0.06 -14.29 16 10 C 0.44 10.32 7.82 -10.98 -0.09 10.23 16 11 O -0.58 -15.72 15.78 5.55 0.09 -15.63 16 12 C 0.05 0.88 6.17 -4.98 -0.03 0.84 16 13 N -0.67 -10.21 5.97 -115.05 -0.69 -10.90 16 14 C 0.07 0.73 4.97 -3.82 -0.02 0.71 16 15 C -0.09 -0.80 3.03 -88.95 -0.27 -1.07 16 16 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 17 C -0.11 -1.07 6.20 -24.66 -0.15 -1.22 16 18 C -0.14 -1.21 6.53 -25.00 -0.16 -1.37 16 19 C 0.14 1.10 3.25 -66.81 -0.22 0.88 16 20 H 0.09 0.88 7.57 -51.93 -0.39 0.49 16 21 N -0.72 -4.39 5.03 -52.72 -0.27 -4.66 16 22 C 0.51 3.83 7.83 -10.98 -0.09 3.74 16 23 O -0.54 -6.33 15.64 5.56 0.09 -6.24 16 24 C -0.14 -0.54 5.62 -27.88 -0.16 -0.69 16 25 C -0.16 -0.78 4.73 -26.73 -0.13 -0.90 16 26 C 0.26 1.20 5.29 37.16 0.20 1.39 16 27 F -0.21 -1.50 17.34 2.25 0.04 -1.46 16 28 F -0.21 -1.36 17.02 2.25 0.04 -1.32 16 29 C -0.12 -0.88 6.14 -25.61 -0.16 -1.04 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.35 5.50 8.43 -39.29 -0.33 5.17 16 35 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 36 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 41 H 0.40 1.36 8.32 -40.82 -0.34 1.02 16 42 H 0.10 0.27 7.94 -51.93 -0.41 -0.14 16 43 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.10 0.55 8.10 -51.93 -0.42 0.13 16 45 H 0.10 0.63 8.10 -51.93 -0.42 0.21 16 46 H 0.11 0.15 8.14 -51.93 -0.42 -0.28 16 47 H 0.08 0.55 7.84 -51.93 -0.41 0.14 16 48 H 0.07 0.39 7.62 -51.93 -0.40 0.00 16 LS Contribution 405.24 15.07 6.11 6.11 Total: -1.00 -34.18 405.24 -8.05 -42.23 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -7.59 Total: 10.44 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.51 Total: 3.52 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.29 Total: -53.59 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.17 Total: -21.87 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.18 -8.05 -42.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725655241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.812 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds