Wall clock time and date at job start Wed Apr 1 2020 04:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99942 * 2 1 4 4 H 1.48501 * 109.47088 * 269.99890 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.00092 * 3 2 1 6 6 H 1.48502 * 109.47297 * 149.99876 * 3 2 1 7 7 C 1.38955 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99722 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47051 * 180.02562 * 12 10 9 14 14 C 1.46907 * 110.99969 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47021 * 179.97438 * 14 13 12 16 16 H 1.08993 * 110.43488 * 305.69987 * 15 14 13 17 17 C 1.54893 * 110.48571 * 68.24530 * 15 14 13 18 18 C 1.55022 * 102.68314 * 156.51399 * 17 15 14 19 19 C 1.54261 * 104.28467 * 322.23038 * 18 17 15 20 20 H 1.09000 * 110.07640 * 264.21474 * 19 18 17 21 21 N 1.46498 * 110.03726 * 142.79947 * 19 18 17 22 22 C 1.34781 * 119.99480 * 87.83458 * 21 19 18 23 23 O 1.21280 * 120.00106 * 359.97438 * 22 21 19 24 24 C 1.50706 * 119.99779 * 180.02562 * 22 21 19 25 25 C 1.53000 * 109.46833 * 179.97438 * 24 22 21 26 26 C 1.53008 * 109.46680 * 179.97438 * 25 24 22 27 27 F 1.39895 * 109.46697 * 174.99919 * 26 25 24 28 28 F 1.39894 * 109.46917 * 295.00137 * 26 25 24 29 29 C 1.53877 * 106.59840 * 23.51929 * 19 18 17 30 30 H 0.97000 * 120.00310 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00208 * 0.26881 * 9 7 2 32 32 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 33 33 H 1.08997 * 109.47392 * 59.99562 * 12 10 9 34 34 H 1.00902 * 110.99727 * 303.94906 * 13 12 10 35 35 H 1.09003 * 109.46987 * 299.99556 * 14 13 12 36 36 H 1.09004 * 109.47143 * 59.99347 * 14 13 12 37 37 H 1.09005 * 110.75008 * 274.93485 * 17 15 14 38 38 H 1.08999 * 110.75464 * 38.29633 * 17 15 14 39 39 H 1.09006 * 110.52296 * 203.48321 * 18 17 15 40 40 H 1.09003 * 110.48350 * 80.95812 * 18 17 15 41 41 H 0.96991 * 120.00615 * 267.83914 * 21 19 18 42 42 H 1.08999 * 109.46725 * 300.00200 * 24 22 21 43 43 H 1.08998 * 109.46650 * 60.00064 * 24 22 21 44 44 H 1.08998 * 109.47269 * 300.00024 * 25 24 22 45 45 H 1.08991 * 109.46966 * 60.00077 * 25 24 22 46 46 H 1.09004 * 109.46744 * 55.00306 * 26 25 24 47 47 H 1.08999 * 110.03414 * 240.71715 * 29 19 18 48 48 H 1.08996 * 110.03871 * 119.28563 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8630 0.0011 13 7 2.1984 -5.9795 0.0016 14 6 1.4981 -7.2709 0.0016 15 6 2.5231 -8.4068 0.0015 16 1 3.2205 -8.2900 -0.8280 17 6 3.2856 -8.4491 1.3491 18 6 3.7744 -9.9186 1.4176 19 6 2.6091 -10.7355 0.8223 20 1 1.9707 -11.1135 1.6208 21 7 3.1317 -11.8501 0.0280 22 6 3.4052 -13.0295 0.6202 23 8 3.2190 -13.1679 1.8106 24 6 3.9433 -14.1759 -0.1967 25 6 4.1666 -15.3877 0.7103 26 6 4.7124 -16.5518 -0.1192 27 9 5.0238 -17.6215 0.7269 28 9 3.7465 -16.9566 -1.0467 29 6 1.8134 -9.7743 -0.0782 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 -0.0038 32 1 0.6175 -4.9205 0.8914 33 1 0.6168 -4.9209 -0.8885 34 1 2.8332 -5.9128 -0.7798 35 1 0.8730 -7.3452 0.8914 36 1 0.8734 -7.3454 -0.8886 37 1 4.1294 -7.7591 1.3372 38 1 2.6152 -8.2268 2.1793 39 1 3.9575 -10.2127 2.4512 40 1 4.6763 -10.0489 0.8195 41 1 3.2810 -11.7393 -0.9239 42 1 3.2277 -14.4330 -0.9776 43 1 4.8895 -13.8845 -0.6525 44 1 4.8824 -15.1303 1.4910 45 1 3.2207 -15.6792 1.1665 46 1 5.6112 -16.2321 -0.6466 47 1 0.7892 -9.6851 0.2840 48 1 1.8161 -10.1370 -1.1060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725655241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:07 Heat of formation + Delta-G solvation = -227.211485 kcal Electronic energy + Delta-G solvation = -29030.699001 eV Core-core repulsion = 24367.770062 eV Total energy + Delta-G solvation = -4662.928939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.87314 -47.90618 -41.06198 -40.15989 -39.21203 -36.65347 -35.83155 -34.78497 -34.40647 -33.24943 -30.82887 -29.54064 -28.34415 -27.30412 -25.93190 -23.91387 -23.41132 -21.58071 -21.35125 -21.28363 -20.69086 -19.87010 -18.63263 -18.46716 -17.94866 -17.78149 -17.22542 -16.95850 -16.74498 -16.51980 -16.42392 -16.01384 -15.65534 -15.61149 -15.05317 -14.89632 -14.84404 -14.77609 -14.48648 -14.28641 -14.10270 -14.05139 -13.51348 -13.45416 -13.18296 -13.15808 -12.88367 -12.82005 -12.80453 -12.42019 -12.31703 -12.21179 -12.12421 -11.89152 -11.80588 -11.67966 -11.67574 -11.50124 -11.42009 -10.89099 -10.32698 -10.02978 -10.00813 -9.24160 -8.46287 -5.94995 1.38370 1.42287 1.55002 1.65164 2.06413 2.15271 2.29794 2.94629 3.00230 3.21248 3.40606 3.51269 3.52679 3.60978 3.68482 3.82470 3.86570 3.98112 4.27264 4.31113 4.34438 4.40379 4.44117 4.52499 4.54172 4.58717 4.61125 4.63496 4.69663 4.73979 4.84027 4.88950 4.93880 5.03676 5.04853 5.18753 5.22484 5.40490 5.41464 5.52779 5.63993 5.91835 6.14527 6.47733 6.59691 6.60987 7.13273 7.30021 7.57252 8.12604 8.71121 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.046061 B = 0.001238 C = 0.001230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.739286 B =22620.354447 C =22752.249453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.066 3.934 13 N -0.682 5.682 14 C 0.067 3.933 15 C -0.080 4.080 16 H 0.081 0.919 17 C -0.106 4.106 18 C -0.129 4.129 19 C 0.144 3.856 20 H 0.071 0.929 21 N -0.711 5.711 22 C 0.509 3.491 23 O -0.589 6.589 24 C -0.133 4.133 25 C -0.155 4.155 26 C 0.260 3.740 27 F -0.224 7.224 28 F -0.218 7.218 29 C -0.113 4.113 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.344 0.656 35 H 0.073 0.927 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.417 0.583 42 H 0.121 0.879 43 H 0.136 0.864 44 H 0.097 0.903 45 H 0.071 0.929 46 H 0.154 0.846 47 H 0.081 0.919 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 -31.125 -5.288 31.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.067 4.067 13 N -0.314 5.314 14 C -0.062 4.062 15 C -0.099 4.099 16 H 0.099 0.901 17 C -0.144 4.144 18 C -0.168 4.168 19 C 0.039 3.961 20 H 0.089 0.911 21 N -0.364 5.364 22 C 0.297 3.703 23 O -0.469 6.469 24 C -0.173 4.173 25 C -0.194 4.194 26 C 0.207 3.793 27 F -0.205 7.205 28 F -0.200 7.200 29 C -0.151 4.151 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.162 0.838 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.255 0.745 42 H 0.139 0.861 43 H 0.154 0.846 44 H 0.116 0.884 45 H 0.090 0.910 46 H 0.171 0.829 47 H 0.100 0.900 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.845 -31.091 -3.771 31.692 hybrid contribution -0.570 0.998 -0.856 1.433 sum 4.274 -30.094 -4.627 30.746 Atomic orbital electron populations 1.69670 1.06830 1.29283 1.50358 1.26022 0.96520 1.02365 0.96248 0.84937 0.77876 0.76913 0.78678 1.19529 1.19584 1.19850 1.19675 0.92717 0.84107 1.49976 0.90348 1.41938 1.09321 1.04737 1.65111 1.20940 0.88286 0.86226 0.82092 1.90486 1.15876 1.87988 1.56620 1.21517 0.94073 0.88199 1.02907 1.60061 1.19041 1.00954 1.51340 1.22122 0.95627 0.87282 1.01134 1.21890 0.96644 0.93180 0.98210 0.90086 1.22362 0.99716 0.95023 0.97271 1.22744 0.98391 0.95008 1.00610 1.21499 0.94628 0.86115 0.93868 0.91070 1.46125 1.65773 1.11302 1.13167 1.21127 0.76771 0.84506 0.87935 1.90727 1.54515 1.83786 1.17896 1.21606 1.05828 0.91224 0.98606 1.22352 1.04230 0.93576 0.99207 1.22334 0.91784 0.82581 0.82614 1.92963 1.93631 1.60588 1.73348 1.92968 1.67430 1.92083 1.67482 1.22370 0.99297 0.92772 1.00694 0.91310 0.76993 0.88163 0.91581 0.83794 0.90831 0.93876 0.92458 0.92207 0.92938 0.90801 0.74473 0.86082 0.84598 0.88407 0.90986 0.82877 0.90033 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.34 -19.03 9.68 84.04 0.81 -18.22 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -29.32 5.29 -306.98 -1.62 -30.94 16 10 C 0.44 20.60 7.82 87.66 0.69 21.29 16 11 O -0.62 -34.32 15.78 -3.07 -0.05 -34.36 16 12 C 0.07 2.17 6.17 85.56 0.53 2.70 16 13 N -0.68 -20.11 5.97 -517.92 -3.09 -23.20 16 14 C 0.07 1.35 4.97 86.30 0.43 1.78 16 15 C -0.08 -1.31 3.03 -9.72 -0.03 -1.34 16 16 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 17 C -0.11 -2.13 6.20 31.93 0.20 -1.93 16 18 C -0.13 -2.25 6.53 31.71 0.21 -2.05 16 19 C 0.14 2.09 3.25 45.72 0.15 2.24 16 20 H 0.07 1.37 7.57 -2.39 -0.02 1.35 16 21 N -0.71 -7.10 5.03 -439.10 -2.21 -9.31 16 22 C 0.51 6.90 7.83 87.66 0.69 7.58 16 23 O -0.59 -14.06 15.64 -3.03 -0.05 -14.11 16 24 C -0.13 -0.66 5.62 29.85 0.17 -0.49 16 25 C -0.16 -1.39 4.73 30.60 0.14 -1.25 16 26 C 0.26 1.91 5.29 71.98 0.38 2.29 16 27 F -0.22 -3.14 17.34 44.97 0.78 -2.36 16 28 F -0.22 -2.50 17.02 44.97 0.77 -1.73 16 29 C -0.11 -1.29 6.14 31.32 0.19 -1.10 16 30 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 31 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 32 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.34 10.59 8.43 -89.69 -0.76 9.83 16 35 H 0.07 1.48 8.06 -2.39 -0.02 1.46 16 36 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.06 1.32 8.00 -2.39 -0.02 1.30 16 39 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.07 1.19 8.05 -2.39 -0.02 1.17 16 41 H 0.42 1.36 8.32 -92.71 -0.77 0.59 16 42 H 0.12 0.23 7.94 -2.39 -0.02 0.22 16 43 H 0.14 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.10 1.00 8.10 -2.39 -0.02 0.98 16 45 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 46 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 47 H 0.08 0.93 7.84 -2.39 -0.02 0.91 16 48 H 0.09 0.67 7.62 -2.39 -0.02 0.65 16 Total: -1.00 -77.00 405.24 0.59 -76.41 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -1.26 Total: 32.69 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 5.02 Total: 11.34 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -6.64 Total: -112.65 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -0.10 Total: -48.47 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 1.54 Total: -4.09 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -77.00 0.59 -76.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725655241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.803 kcal (2) G-P(sol) polarization free energy of solvation -77.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds