Wall clock time and date at job start Wed Apr 1 2020 04:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00338 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47624 * 179.97438 * 14 13 12 16 16 H 1.09004 * 110.01825 * 305.06283 * 15 14 13 17 17 C 1.53875 * 110.03472 * 66.44978 * 15 14 13 18 18 C 1.54268 * 106.59808 * 119.28682 * 17 15 14 19 19 C 1.54887 * 104.19363 * 23.61176 * 18 17 15 20 20 H 1.08999 * 110.75380 * 80.37361 * 19 18 17 21 21 N 1.46505 * 110.75556 * 203.55588 * 19 18 17 22 22 C 1.34782 * 119.99931 * 273.55047 * 21 19 18 23 23 O 1.21273 * 119.99801 * 359.97438 * 22 21 19 24 24 C 1.50699 * 119.99524 * 180.02562 * 22 21 19 25 25 C 1.53001 * 109.46687 * 180.02562 * 24 22 21 26 26 C 1.52997 * 109.46843 * 180.02562 * 25 24 22 27 27 F 1.39904 * 109.47410 * 174.99610 * 26 25 24 28 28 F 1.39910 * 109.46999 * 294.99333 * 26 25 24 29 29 C 1.54259 * 110.03631 * 183.61926 * 15 14 13 30 30 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 33 33 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 34 34 H 1.00898 * 111.00484 * 56.03940 * 13 12 10 35 35 H 1.09004 * 109.46960 * 299.99557 * 14 13 12 36 36 H 1.09004 * 109.47385 * 59.99759 * 14 13 12 37 37 H 1.08993 * 110.03441 * 238.57324 * 17 15 14 38 38 H 1.09001 * 110.02811 * 0.02562 * 17 15 14 39 39 H 1.08997 * 110.48181 * 142.29015 * 18 17 15 40 40 H 1.09000 * 110.48613 * 264.80283 * 18 17 15 41 41 H 0.97001 * 119.99932 * 93.54817 * 21 19 18 42 42 H 1.09000 * 109.46712 * 299.99677 * 24 22 21 43 43 H 1.08993 * 109.47647 * 59.99580 * 24 22 21 44 44 H 1.09008 * 109.46750 * 299.99049 * 25 24 22 45 45 H 1.08993 * 109.47645 * 59.99303 * 25 24 22 46 46 H 1.08996 * 109.47680 * 54.99372 * 26 25 24 47 47 H 1.09003 * 110.48748 * 335.78823 * 29 15 14 48 48 H 1.09003 * 110.49054 * 98.42472 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 1.4980 -7.2708 0.0252 15 6 2.5228 -8.4068 0.0300 16 1 3.2090 -8.2939 -0.8094 17 6 3.3057 -8.4049 1.3547 18 6 3.0340 -9.7654 2.0291 19 6 2.6413 -10.6987 0.8570 20 1 3.5283 -11.0553 0.3334 21 7 1.8364 -11.8247 1.3371 22 6 2.4414 -12.9387 1.7951 23 8 3.6520 -13.0090 1.8093 24 6 1.6134 -14.0971 2.2884 25 6 2.5384 -15.2253 2.7493 26 6 1.6977 -16.4017 3.2496 27 9 2.5381 -17.4752 3.5638 28 9 0.9879 -16.0153 4.3916 29 6 1.8028 -9.7685 -0.0543 30 1 -0.4850 0.8400 -0.0004 31 1 0.3533 -2.3906 0.0005 32 1 0.6167 -4.9162 0.9030 33 1 0.6174 -4.9252 -0.8769 34 1 2.8332 -5.9087 0.7993 35 1 0.8734 -7.3407 0.9158 36 1 0.8728 -7.3498 -0.8643 37 1 4.3718 -8.2918 1.1582 38 1 2.9552 -7.5948 1.9943 39 1 3.9333 -10.1322 2.5240 40 1 2.2146 -9.6806 2.7429 41 1 0.8681 -11.7685 1.3255 42 1 0.9941 -13.7712 3.1241 43 1 0.9748 -14.4569 1.4818 44 1 3.1579 -15.5514 1.9137 45 1 3.1767 -14.8653 3.5561 46 1 0.9971 -16.7045 2.4715 47 1 0.7830 -9.6847 0.3211 48 1 1.8035 -10.1376 -1.0800 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725655244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:09 Heat of formation + Delta-G solvation = -228.598497 kcal Electronic energy + Delta-G solvation = -29079.299753 eV Core-core repulsion = 24416.310668 eV Total energy + Delta-G solvation = -4662.989085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.86881 -47.90346 -41.05262 -40.18972 -39.31108 -36.63754 -35.84565 -34.79454 -34.44522 -33.25668 -30.80922 -29.61945 -28.35559 -27.29892 -25.91395 -24.08617 -23.44281 -21.69635 -21.55731 -21.08335 -20.30968 -19.89237 -18.61651 -18.44198 -18.07032 -17.82345 -17.31260 -16.99856 -16.79700 -16.56729 -16.39787 -16.26602 -15.93634 -15.36273 -15.10113 -14.93009 -14.80171 -14.54904 -14.43982 -14.26883 -14.15077 -13.79074 -13.53301 -13.43549 -13.41282 -13.25695 -13.02836 -12.92644 -12.75372 -12.45054 -12.41828 -12.21263 -12.12766 -12.00326 -11.80732 -11.68988 -11.56902 -11.50241 -11.38082 -10.92444 -10.34262 -10.03697 -10.01472 -9.28115 -8.46915 -5.95616 1.38010 1.41959 1.54484 1.64275 2.05460 2.11300 2.29521 2.93414 3.01956 3.20512 3.40276 3.51981 3.54465 3.56125 3.66018 3.69529 3.95256 4.00772 4.26644 4.27556 4.31625 4.34993 4.38468 4.46345 4.51323 4.54973 4.60192 4.62219 4.64117 4.69728 4.85188 4.88968 4.91189 5.04335 5.07830 5.12797 5.21140 5.31611 5.40833 5.46379 5.60249 5.91429 6.14434 6.43572 6.59353 6.60455 7.12701 7.29534 7.56381 8.12047 8.70443 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.037403 B = 0.001261 C = 0.001252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.416654 B =22197.799007 C =22358.060046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.336 4.336 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.687 5.687 14 C 0.069 3.931 15 C -0.083 4.083 16 H 0.072 0.928 17 C -0.120 4.120 18 C -0.127 4.127 19 C 0.143 3.857 20 H 0.074 0.926 21 N -0.709 5.709 22 C 0.509 3.491 23 O -0.589 6.589 24 C -0.132 4.132 25 C -0.156 4.156 26 C 0.260 3.740 27 F -0.224 7.224 28 F -0.219 7.219 29 C -0.107 4.107 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.342 0.658 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.419 0.581 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.156 0.844 47 H 0.096 0.904 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.637 -32.493 3.176 33.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.466 4.466 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.067 4.067 13 N -0.320 5.320 14 C -0.059 4.059 15 C -0.102 4.102 16 H 0.091 0.909 17 C -0.158 4.158 18 C -0.166 4.166 19 C 0.037 3.963 20 H 0.092 0.908 21 N -0.361 5.361 22 C 0.297 3.703 23 O -0.469 6.469 24 C -0.172 4.172 25 C -0.194 4.194 26 C 0.207 3.793 27 F -0.206 7.206 28 F -0.201 7.201 29 C -0.146 4.146 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.161 0.839 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.257 0.743 42 H 0.137 0.863 43 H 0.158 0.842 44 H 0.118 0.882 45 H 0.088 0.912 46 H 0.173 0.827 47 H 0.114 0.886 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.053 -32.389 2.535 32.879 hybrid contribution -0.305 1.182 1.163 1.686 sum -5.358 -31.208 3.698 31.879 Atomic orbital electron populations 1.69667 1.06778 1.29300 1.50274 1.26011 0.96534 1.02315 0.96209 0.84944 0.77884 0.76948 0.78660 1.19649 1.19438 1.19878 1.19672 0.92698 0.84136 1.50055 0.90454 1.41929 1.09331 1.04684 1.65042 1.20971 0.88288 0.86301 0.82156 1.90492 1.15992 1.88003 1.56683 1.21532 0.94016 0.88033 1.03112 1.60103 1.19202 1.01244 1.51480 1.22145 0.95380 0.86971 1.01437 1.21640 0.96894 0.93913 0.97792 0.90948 1.22134 1.00261 0.96976 0.96449 1.22655 1.01294 0.94652 0.97998 1.21818 0.94595 0.85544 0.94316 0.90807 1.45888 1.11146 1.14912 1.64139 1.21137 0.88359 0.84412 0.76377 1.90732 1.16800 1.82703 1.56671 1.21603 0.98389 0.92107 1.05096 1.22359 0.98887 0.94483 1.03702 1.22358 0.87912 0.83886 0.85174 1.92965 1.74334 1.58854 1.94409 1.92973 1.79610 1.91600 1.55876 1.22524 0.99537 0.92249 1.00266 0.91274 0.76912 0.91596 0.87645 0.83943 0.93938 0.89891 0.92537 0.92212 0.93205 0.90533 0.74329 0.86280 0.84200 0.88240 0.91227 0.82674 0.88589 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.29 13.05 21.66 0.28 -49.00 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.34 -19.17 9.68 84.04 0.81 -18.35 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.57 -29.34 5.29 -306.98 -1.62 -30.96 16 10 C 0.44 20.73 7.82 87.66 0.69 21.41 16 11 O -0.63 -35.02 15.78 -3.07 -0.05 -35.07 16 12 C 0.07 2.18 6.17 85.56 0.53 2.71 16 13 N -0.69 -20.95 6.13 -517.94 -3.17 -24.12 16 14 C 0.07 1.39 4.81 86.30 0.42 1.81 16 15 C -0.08 -1.47 3.16 -10.07 -0.03 -1.51 16 16 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 17 C -0.12 -2.36 5.95 31.32 0.19 -2.18 16 18 C -0.13 -2.20 6.51 31.67 0.21 -1.99 16 19 C 0.14 2.03 3.18 46.28 0.15 2.18 16 20 H 0.07 1.42 7.70 -2.39 -0.02 1.40 16 21 N -0.71 -6.66 5.21 -436.44 -2.27 -8.93 16 22 C 0.51 6.72 7.83 87.66 0.69 7.40 16 23 O -0.59 -14.01 15.71 -3.01 -0.05 -14.06 16 24 C -0.13 -0.59 5.62 29.85 0.17 -0.42 16 25 C -0.16 -1.36 4.73 30.59 0.14 -1.21 16 26 C 0.26 1.83 5.29 71.98 0.38 2.21 16 27 F -0.22 -3.10 17.34 44.97 0.78 -2.32 16 28 F -0.22 -2.53 17.02 44.97 0.77 -1.77 16 29 C -0.11 -1.20 5.97 31.66 0.19 -1.01 16 30 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 33 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.34 11.22 7.10 -89.70 -0.64 10.59 16 35 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.26 6.89 -2.39 -0.02 1.24 16 39 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.42 0.95 8.54 -92.71 -0.79 0.15 16 42 H 0.12 0.24 7.94 -2.39 -0.02 0.22 16 43 H 0.14 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.10 0.95 8.10 -2.38 -0.02 0.93 16 45 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 46 H 0.16 -0.25 8.14 -2.39 -0.02 -0.27 16 47 H 0.10 0.69 7.74 -2.39 -0.02 0.67 16 48 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -78.40 403.62 0.52 -77.88 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -1.16 Total: 32.47 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 4.98 Total: 10.95 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -6.79 Total: -113.02 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -0.10 Total: -49.13 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 1.54 Total: -4.08 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -78.40 0.52 -77.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725655244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.716 kcal (2) G-P(sol) polarization free energy of solvation -78.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds