Wall clock time and date at job start Wed Apr 1 2020 05:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86794 * 119.99866 * 2 1 4 4 H 1.48500 * 109.47442 * 270.00089 * 3 2 1 5 5 H 1.48503 * 109.47218 * 30.00271 * 3 2 1 6 6 H 1.48503 * 109.47407 * 149.99822 * 3 2 1 7 7 C 1.38953 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99579 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99868 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99740 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00216 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47315 * 179.97438 * 12 10 9 14 14 C 1.46899 * 110.99757 * 180.02562 * 13 12 10 15 15 C 1.53009 * 109.47111 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.49482 * 304.93545 * 15 14 13 17 17 C 1.53032 * 109.49953 * 184.83522 * 15 14 13 18 18 C 1.53042 * 109.53945 * 178.68074 * 17 15 14 19 19 C 1.53190 * 109.30959 * 61.36637 * 18 17 15 20 20 N 1.46928 * 108.77903 * 305.36686 * 19 18 17 21 21 C 1.34777 * 120.63277 * 233.58943 * 20 19 18 22 22 O 1.21510 * 120.00065 * 172.41005 * 21 20 19 23 23 C 1.48157 * 119.99979 * 352.40858 * 21 20 19 24 24 C 1.39712 * 120.18251 * 170.85494 * 23 21 20 25 25 C 1.38831 * 117.89513 * 179.80340 * 24 23 21 26 26 C 1.38571 * 118.06917 * 0.44532 * 25 24 23 27 27 N 1.32173 * 120.06694 * 359.79134 * 26 25 24 28 28 N 1.28349 * 122.30194 * 359.97375 * 27 26 25 29 29 C 1.46925 * 118.73573 * 53.60566 * 20 19 18 30 30 H 0.96998 * 119.99930 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99727 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47104 * 59.99569 * 12 10 9 33 33 H 1.09006 * 109.47372 * 299.99884 * 12 10 9 34 34 H 1.00895 * 110.99832 * 56.04499 * 13 12 10 35 35 H 1.08995 * 109.47790 * 60.00014 * 14 13 12 36 36 H 1.09003 * 109.47547 * 299.99579 * 14 13 12 37 37 H 1.09007 * 109.46039 * 58.66706 * 17 15 14 38 38 H 1.09001 * 109.46681 * 298.70589 * 17 15 14 39 39 H 1.08998 * 109.49987 * 301.41706 * 18 17 15 40 40 H 1.09003 * 109.49971 * 181.31744 * 18 17 15 41 41 H 1.08998 * 109.58775 * 65.15394 * 19 18 17 42 42 H 1.09001 * 109.58892 * 185.57778 * 19 18 17 43 43 H 1.07993 * 121.05296 * 0.02562 * 24 23 21 44 44 H 1.08001 * 120.96050 * 180.23737 * 25 24 23 45 45 H 1.08001 * 119.96308 * 179.76752 * 26 25 24 46 46 H 1.09000 * 109.58723 * 66.18660 * 29 20 19 47 47 H 1.09007 * 109.58536 * 186.60419 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 1.4981 -7.2708 0.0026 15 6 2.5231 -8.4068 0.0038 16 1 3.2042 -8.2831 -0.8381 17 6 1.7980 -9.7490 -0.1178 18 6 2.8242 -10.8840 -0.1498 19 6 3.6223 -10.8824 1.1577 20 7 4.2045 -9.5479 1.3548 21 6 5.5268 -9.4004 1.5700 22 8 6.0183 -8.2895 1.5941 23 6 6.3811 -10.5931 1.7774 24 6 7.7718 -10.4638 1.8102 25 6 8.5263 -11.6117 2.0115 26 6 7.8556 -12.8154 2.1580 27 7 6.5352 -12.8480 2.1086 28 7 5.8293 -11.7915 1.9275 29 6 3.3178 -8.3771 1.3131 30 1 -0.4850 0.8400 0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6175 -4.9212 -0.8880 33 1 0.6168 -4.9201 0.8920 34 1 2.8333 -5.9120 0.7840 35 1 0.8735 -7.3454 -0.8875 36 1 0.8729 -7.3451 0.8924 37 1 1.2121 -9.7633 -1.0369 38 1 1.1353 -9.8827 0.7372 39 1 3.5026 -10.7376 -0.9903 40 1 2.3083 -11.8379 -0.2600 41 1 2.9599 -11.1186 1.9905 42 1 4.4192 -11.6239 1.1004 43 1 8.2448 -9.5008 1.6866 44 1 9.6047 -11.5682 2.0494 45 1 8.4124 -13.7278 2.3122 46 1 2.6305 -8.4090 2.1586 47 1 3.9137 -7.4655 1.3583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731527559.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:38 Heat of formation + Delta-G solvation = 6.169872 kcal Electronic energy + Delta-G solvation = -29678.993474 eV Core-core repulsion = 25476.873896 eV Total energy + Delta-G solvation = -4202.119578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.79087 -40.10114 -38.37902 -37.83491 -35.63285 -34.00259 -33.74061 -33.43580 -32.65149 -31.39808 -31.05453 -27.42005 -26.72771 -25.31701 -24.92074 -24.65819 -23.56014 -21.82993 -21.13406 -19.86870 -19.16804 -18.39115 -17.83479 -17.54842 -17.22099 -16.44794 -16.11601 -15.88171 -15.59868 -15.02971 -14.95103 -14.59898 -14.56534 -14.45949 -14.15195 -13.81721 -13.78779 -13.65241 -13.35298 -13.13762 -13.03151 -12.84863 -12.30512 -11.92961 -11.60359 -11.47916 -11.33408 -11.27417 -11.06344 -11.00932 -10.86638 -10.77996 -10.61002 -10.57549 -10.35725 -10.28896 -10.17240 -9.76356 -9.46325 -8.84322 -8.40138 -8.00216 -7.90805 -6.37393 -3.77842 -0.06249 0.19290 2.28449 2.53601 3.14559 3.21338 3.29447 3.35904 3.36596 3.84968 3.96343 3.97944 4.11730 4.16568 4.30363 4.34070 4.51423 4.66202 4.73028 4.80083 4.85932 5.11971 5.14730 5.18203 5.28589 5.31504 5.32713 5.41191 5.50144 5.53298 5.55681 5.60072 5.77365 5.80877 5.83586 5.89160 5.96504 6.03140 6.08395 6.25581 6.33002 6.37723 7.08138 7.26961 7.59696 7.70068 7.73831 8.00408 8.11348 8.66511 9.22753 9.59394 10.11407 10.80467 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.001928 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.903580 B =14522.781940 C =15935.306022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.581 6.581 12 C 0.051 3.949 13 N -0.671 5.671 14 C 0.067 3.933 15 C -0.098 4.098 16 H 0.087 0.913 17 C -0.115 4.115 18 C -0.134 4.134 19 C 0.074 3.926 20 N -0.586 5.586 21 C 0.569 3.431 22 O -0.518 6.518 23 C 0.032 3.968 24 C -0.065 4.065 25 C -0.118 4.118 26 C 0.055 3.945 27 N -0.248 5.248 28 N -0.207 5.207 29 C 0.110 3.890 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.349 0.651 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.139 0.861 43 H 0.165 0.835 44 H 0.160 0.840 45 H 0.179 0.821 46 H 0.069 0.931 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.747 -29.230 3.701 30.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.226 3.774 11 O -0.464 6.464 12 C -0.082 4.082 13 N -0.304 5.304 14 C -0.063 4.063 15 C -0.118 4.118 16 H 0.105 0.895 17 C -0.153 4.153 18 C -0.172 4.172 19 C -0.049 4.049 20 N -0.318 5.318 21 C 0.353 3.647 22 O -0.392 6.392 23 C -0.114 4.114 24 C -0.094 4.094 25 C -0.147 4.147 26 C -0.107 4.107 27 N -0.090 5.090 28 N -0.053 5.053 29 C -0.012 4.012 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.169 0.831 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.156 0.844 43 H 0.183 0.817 44 H 0.178 0.822 45 H 0.196 0.804 46 H 0.088 0.912 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.410 -29.323 3.131 30.665 hybrid contribution 0.620 1.641 0.801 1.928 sum 9.030 -27.682 3.932 29.382 Atomic orbital electron populations 1.69616 1.05909 1.28066 1.50858 1.25258 0.95645 0.99694 0.97444 0.85855 0.79223 0.80820 0.78373 1.20423 1.20979 1.19433 1.19712 0.93387 0.82258 1.47371 0.87932 1.41860 1.09169 1.04590 1.64584 1.19839 0.88424 0.84755 0.84386 1.90540 1.13739 1.87047 1.55113 1.21670 0.94349 0.91011 1.01173 1.60095 1.18852 0.99952 1.51480 1.21959 0.95029 0.88646 1.00704 1.21522 0.97544 0.94307 0.98403 0.89497 1.21572 0.97670 0.93669 1.02429 1.21938 0.98246 0.99085 0.97955 1.22928 1.00510 0.84334 0.97150 1.47910 1.06110 1.08940 1.68811 1.17639 0.81995 0.86982 0.78069 1.90877 1.72881 1.24648 1.50798 1.22952 0.93967 0.94737 0.99719 1.22501 0.93025 1.01447 0.92394 1.22525 1.02873 0.92517 0.96781 1.24497 0.92936 0.99462 0.93845 1.73165 1.06259 1.20818 1.08783 1.73143 1.29463 0.95453 1.07269 1.21869 0.92809 0.89068 0.97482 0.91944 0.77484 0.89592 0.93898 0.83081 0.90596 0.95350 0.91343 0.91682 0.91730 0.90529 0.91243 0.84444 0.81712 0.82246 0.80444 0.91235 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.99 13.05 55.50 0.72 -24.26 16 2 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 3 Si 0.93 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 8 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 9 N -0.57 -14.72 5.29 -10.97 -0.06 -14.78 16 10 C 0.44 10.79 7.82 -10.99 -0.09 10.70 16 11 O -0.58 -16.44 15.78 5.54 0.09 -16.35 16 12 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 13 N -0.67 -11.33 6.12 -115.05 -0.70 -12.04 16 14 C 0.07 0.83 5.15 -3.82 -0.02 0.81 16 15 C -0.10 -1.10 2.55 -90.50 -0.23 -1.33 16 16 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.12 -0.99 5.17 -26.69 -0.14 -1.13 16 18 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 19 C 0.07 0.68 5.91 -3.71 -0.02 0.65 16 20 N -0.59 -6.78 2.97 -173.76 -0.52 -7.30 16 21 C 0.57 7.36 7.66 -12.19 -0.09 7.27 16 22 O -0.52 -8.41 15.86 5.36 0.08 -8.33 16 23 C 0.03 0.33 6.67 -82.83 -0.55 -0.23 16 24 C -0.06 -0.50 9.73 -38.81 -0.38 -0.88 16 25 C -0.12 -0.55 10.20 -39.24 -0.40 -0.95 16 26 C 0.06 0.29 11.31 -17.28 -0.20 0.09 16 27 N -0.25 -2.15 11.51 30.58 0.35 -1.80 16 28 N -0.21 -2.05 7.33 33.32 0.24 -1.80 16 29 C 0.11 1.32 5.36 -3.71 -0.02 1.30 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 32 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.35 6.22 6.82 -39.29 -0.27 5.96 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.14 1.31 4.00 -133.27 -0.53 0.77 16 43 H 0.17 1.18 7.75 -52.49 -0.41 0.77 16 44 H 0.16 0.17 8.06 -52.49 -0.42 -0.25 16 45 H 0.18 0.26 8.06 -52.49 -0.42 -0.16 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.10 1.50 5.81 -51.92 -0.30 1.20 16 LS Contribution 387.13 15.07 5.83 5.83 Total: -1.00 -35.51 387.13 -8.38 -43.89 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -6.84 Total: 12.66 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -2.57 Total: 7.77 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 0.04 Total: -61.99 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: 0.17 Total: -24.68 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.51 -8.38 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731527559.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.059 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds