Wall clock time and date at job start Wed Apr 1 2020 05:02:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31416 * 1
3 3 Si 1.86794 * 119.99866 * 2 1
4 4 H 1.48500 * 109.47442 * 270.00089 * 3 2 1
5 5 H 1.48503 * 109.47218 * 30.00271 * 3 2 1
6 6 H 1.48503 * 109.47407 * 149.99822 * 3 2 1
7 7 C 1.38953 * 119.99941 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99579 * 180.02562 * 7 2 1
9 9 N 1.37098 * 119.99925 * 0.02562 * 7 2 1
10 10 C 1.34774 * 119.99868 * 180.02562 * 9 7 2
11 11 O 1.21296 * 119.99740 * 359.97438 * 10 9 7
12 12 C 1.50692 * 120.00216 * 179.97438 * 10 9 7
13 13 N 1.46902 * 109.47315 * 179.97438 * 12 10 9
14 14 C 1.46899 * 110.99757 * 180.02562 * 13 12 10
15 15 C 1.53009 * 109.47111 * 180.02562 * 14 13 12
16 16 H 1.08997 * 109.49482 * 304.93545 * 15 14 13
17 17 C 1.53032 * 109.49953 * 184.83522 * 15 14 13
18 18 C 1.53042 * 109.53945 * 178.68074 * 17 15 14
19 19 C 1.53190 * 109.30959 * 61.36637 * 18 17 15
20 20 N 1.46928 * 108.77903 * 305.36686 * 19 18 17
21 21 C 1.34777 * 120.63277 * 233.58943 * 20 19 18
22 22 O 1.21510 * 120.00065 * 172.41005 * 21 20 19
23 23 C 1.48157 * 119.99979 * 352.40858 * 21 20 19
24 24 C 1.39712 * 120.18251 * 170.85494 * 23 21 20
25 25 C 1.38831 * 117.89513 * 179.80340 * 24 23 21
26 26 C 1.38571 * 118.06917 * 0.44532 * 25 24 23
27 27 N 1.32173 * 120.06694 * 359.79134 * 26 25 24
28 28 N 1.28349 * 122.30194 * 359.97375 * 27 26 25
29 29 C 1.46925 * 118.73573 * 53.60566 * 20 19 18
30 30 H 0.96998 * 119.99930 * 359.97438 * 1 2 3
31 31 H 0.96998 * 119.99727 * 359.97438 * 9 7 2
32 32 H 1.09002 * 109.47104 * 59.99569 * 12 10 9
33 33 H 1.09006 * 109.47372 * 299.99884 * 12 10 9
34 34 H 1.00895 * 110.99832 * 56.04499 * 13 12 10
35 35 H 1.08995 * 109.47790 * 60.00014 * 14 13 12
36 36 H 1.09003 * 109.47547 * 299.99579 * 14 13 12
37 37 H 1.09007 * 109.46039 * 58.66706 * 17 15 14
38 38 H 1.09001 * 109.46681 * 298.70589 * 17 15 14
39 39 H 1.08998 * 109.49987 * 301.41706 * 18 17 15
40 40 H 1.09003 * 109.49971 * 181.31744 * 18 17 15
41 41 H 1.08998 * 109.58775 * 65.15394 * 19 18 17
42 42 H 1.09001 * 109.58892 * 185.57778 * 19 18 17
43 43 H 1.07993 * 121.05296 * 0.02562 * 24 23 21
44 44 H 1.08001 * 120.96050 * 180.23737 * 25 24 23
45 45 H 1.08001 * 119.96308 * 179.76752 * 26 25 24
46 46 H 1.09000 * 109.58723 * 66.18660 * 29 20 19
47 47 H 1.09007 * 109.58536 * 186.60419 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3142 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 2.4956 2.0465 -1.4000
5 1 1.4455 2.6526 0.7001
6 1 3.5457 1.4403 0.7001
7 6 2.0089 -1.2034 0.0005
8 1 3.0889 -1.2033 0.0010
9 7 1.3234 -2.3907 0.0005
10 6 1.9973 -3.5578 0.0016
11 8 3.2102 -3.5578 0.0021
12 6 1.2439 -4.8629 0.0022
13 7 2.1985 -5.9795 0.0027
14 6 1.4981 -7.2708 0.0026
15 6 2.5231 -8.4068 0.0038
16 1 3.2042 -8.2831 -0.8381
17 6 1.7980 -9.7490 -0.1178
18 6 2.8242 -10.8840 -0.1498
19 6 3.6223 -10.8824 1.1577
20 7 4.2045 -9.5479 1.3548
21 6 5.5268 -9.4004 1.5700
22 8 6.0183 -8.2895 1.5941
23 6 6.3811 -10.5931 1.7774
24 6 7.7718 -10.4638 1.8102
25 6 8.5263 -11.6117 2.0115
26 6 7.8556 -12.8154 2.1580
27 7 6.5352 -12.8480 2.1086
28 7 5.8293 -11.7915 1.9275
29 6 3.3178 -8.3771 1.3131
30 1 -0.4850 0.8400 0.0004
31 1 0.3534 -2.3906 0.0005
32 1 0.6175 -4.9212 -0.8880
33 1 0.6168 -4.9201 0.8920
34 1 2.8333 -5.9120 0.7840
35 1 0.8735 -7.3454 -0.8875
36 1 0.8729 -7.3451 0.8924
37 1 1.2121 -9.7633 -1.0369
38 1 1.1353 -9.8827 0.7372
39 1 3.5026 -10.7376 -0.9903
40 1 2.3083 -11.8379 -0.2600
41 1 2.9599 -11.1186 1.9905
42 1 4.4192 -11.6239 1.1004
43 1 8.2448 -9.5008 1.6866
44 1 9.6047 -11.5682 2.0494
45 1 8.4124 -13.7278 2.3122
46 1 2.6305 -8.4090 2.1586
47 1 3.9137 -7.4655 1.3583
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001731527559.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:02:37
Heat of formation + Delta-G solvation = -21.215772 kcal
Electronic energy + Delta-G solvation = -29680.181004 eV
Core-core repulsion = 25476.873896 eV
Total energy + Delta-G solvation = -4203.307108 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-42.44651 -40.95361 -40.16728 -38.95574 -36.86240 -35.90607 -34.55660 -34.18388
-33.41803 -33.27530 -32.23890 -28.80272 -27.62337 -26.65264 -25.74113 -25.39218
-24.92778 -22.72316 -22.02728 -21.10445 -20.65170 -19.92252 -19.12868 -18.18253
-17.84971 -17.77445 -17.33673 -16.87197 -16.80095 -16.48273 -16.06548 -15.91924
-15.65583 -15.44049 -15.28279 -15.19087 -14.82662 -14.59369 -14.35790 -14.21852
-14.04996 -13.88681 -13.65248 -13.47388 -13.12808 -12.85162 -12.77690 -12.43987
-12.22924 -12.12975 -12.09757 -11.87948 -11.74334 -11.52733 -11.46075 -11.35546
-11.26036 -11.04049 -10.46174 -10.34998 -10.03119 -9.75512 -9.32885 -8.48133
-5.96946 -0.66746 -0.33123 1.36634 1.40070 1.48022 1.53226 1.69845
2.03492 2.28199 2.49088 2.68770 2.91085 3.18742 3.29892 3.42936
3.49828 3.68579 3.77485 3.82210 3.86996 3.92831 4.11050 4.12867
4.27899 4.31920 4.36414 4.48968 4.56002 4.61594 4.65274 4.71654
4.73730 4.79931 4.82928 4.90845 4.98223 5.06436 5.13833 5.18191
5.31469 5.39346 5.45356 5.54974 5.88194 6.10511 6.18317 6.34610
6.59035 6.81316 7.11205 7.40530 7.54399 8.10688 8.69228
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.017662 B = 0.001928 C = 0.001757
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1584.903580 B =14522.781940 C =15935.306022
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C -0.013 4.013
3 Si 0.994 3.006
4 H -0.270 1.270
5 H -0.268 1.268
6 H -0.275 1.275
7 C -0.336 4.336
8 H 0.076 0.924
9 N -0.572 5.572
10 C 0.434 3.566
11 O -0.626 6.626
12 C 0.066 3.934
13 N -0.691 5.691
14 C 0.069 3.931
15 C -0.089 4.089
16 H 0.060 0.940
17 C -0.108 4.108
18 C -0.129 4.129
19 C 0.072 3.928
20 N -0.585 5.585
21 C 0.560 3.440
22 O -0.568 6.568
23 C 0.010 3.990
24 C -0.081 4.081
25 C -0.094 4.094
26 C 0.065 3.935
27 N -0.274 5.274
28 N -0.219 5.219
29 C 0.109 3.891
30 H 0.278 0.722
31 H 0.397 0.603
32 H 0.108 0.892
33 H 0.069 0.931
34 H 0.340 0.660
35 H 0.089 0.911
36 H 0.049 0.951
37 H 0.081 0.919
38 H 0.080 0.920
39 H 0.052 0.948
40 H 0.102 0.898
41 H 0.080 0.920
42 H 0.139 0.861
43 H 0.162 0.838
44 H 0.204 0.796
45 H 0.222 0.778
46 H 0.084 0.916
47 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.416 -31.507 3.905 32.845
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.559 5.559
2 C -0.213 4.213
3 Si 0.817 3.183
4 H -0.196 1.196
5 H -0.193 1.193
6 H -0.200 1.200
7 C -0.465 4.465
8 H 0.094 0.906
9 N -0.209 5.209
10 C 0.222 3.778
11 O -0.513 6.513
12 C -0.067 4.067
13 N -0.323 5.323
14 C -0.059 4.059
15 C -0.109 4.109
16 H 0.079 0.921
17 C -0.146 4.146
18 C -0.167 4.167
19 C -0.050 4.050
20 N -0.316 5.316
21 C 0.346 3.654
22 O -0.446 6.446
23 C -0.135 4.135
24 C -0.110 4.110
25 C -0.123 4.123
26 C -0.098 4.098
27 N -0.115 5.115
28 N -0.065 5.065
29 C -0.013 4.013
30 H 0.088 0.912
31 H 0.231 0.769
32 H 0.126 0.874
33 H 0.087 0.913
34 H 0.158 0.842
35 H 0.107 0.893
36 H 0.067 0.933
37 H 0.099 0.901
38 H 0.099 0.901
39 H 0.070 0.930
40 H 0.120 0.880
41 H 0.098 0.902
42 H 0.156 0.844
43 H 0.180 0.820
44 H 0.221 0.779
45 H 0.238 0.762
46 H 0.102 0.898
47 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 8.008 -31.650 3.323 32.816
hybrid contribution 0.804 2.226 0.757 2.485
sum 8.812 -29.424 4.080 30.985
Atomic orbital electron populations
1.69670 1.06741 1.29326 1.50204 1.26047 0.96607 1.02378 0.96224
0.84924 0.77831 0.76848 0.78688 1.19582 1.19263 1.19982 1.19657
0.92648 0.84138 1.50086 0.90599 1.41915 1.09331 1.04639 1.65034
1.20974 0.88269 0.86356 0.82217 1.90508 1.16098 1.88003 1.56657
1.21543 0.93918 0.87882 1.03312 1.60108 1.19322 1.01456 1.51459
1.22066 0.95204 0.86488 1.02185 1.21423 0.96964 0.95802 0.96666
0.92144 1.21551 0.97644 0.91676 1.03755 1.21930 0.97911 1.00185
0.96707 1.23101 1.00798 0.82923 0.98184 1.48073 1.05873 1.09718
1.67893 1.18151 0.82579 0.87376 0.77286 1.90833 1.73851 1.26641
1.53273 1.22668 0.94647 0.94092 1.02132 1.22661 0.92349 1.02812
0.93205 1.23002 1.04685 0.90791 0.93773 1.25212 0.91874 1.01296
0.91393 1.73094 1.08253 1.20258 1.09941 1.73061 1.30208 0.95344
1.07885 1.21797 0.92676 0.88155 0.98687 0.91235 0.76857 0.87449
0.91304 0.84154 0.89284 0.93296 0.90075 0.90102 0.92961 0.87956
0.90153 0.84428 0.82029 0.77912 0.76158 0.89784 0.91614
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -50.49 13.05 21.66 0.28 -50.21 16
2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16
3 Si 0.99 44.21 29.55 68.60 2.03 46.24 16
4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16
5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16
6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16
7 C -0.34 -19.80 9.68 84.04 0.81 -18.98 16
8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16
9 N -0.57 -30.51 5.29 -306.99 -1.62 -32.13 16
10 C 0.43 21.85 7.82 87.65 0.69 22.54 16
11 O -0.63 -37.17 15.78 -3.08 -0.05 -37.21 16
12 C 0.07 2.37 6.17 85.55 0.53 2.89 16
13 N -0.69 -23.60 6.12 -517.92 -3.17 -26.78 16
14 C 0.07 1.64 5.15 86.31 0.44 2.08 16
15 C -0.09 -1.99 2.55 -10.72 -0.03 -2.02 16
16 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
17 C -0.11 -1.65 5.17 30.62 0.16 -1.49 16
18 C -0.13 -1.92 6.08 30.67 0.19 -1.73 16
19 C 0.07 1.28 5.91 86.36 0.51 1.79 16
20 N -0.59 -14.24 2.97 -821.95 -2.44 -16.69 16
21 C 0.56 15.76 7.66 86.88 0.67 16.42 16
22 O -0.57 -20.47 15.86 -3.75 -0.06 -20.52 16
23 C 0.01 0.21 6.67 41.99 0.28 0.49 16
24 C -0.08 -1.26 9.73 22.77 0.22 -1.04 16
25 C -0.09 -0.62 10.20 22.49 0.23 -0.39 16
26 C 0.06 0.48 11.31 84.72 0.96 1.44 16
27 N -0.27 -4.34 11.51 -57.15 -0.66 -5.00 16
28 N -0.22 -4.30 7.33 -48.49 -0.36 -4.65 16
29 C 0.11 2.77 5.36 86.36 0.46 3.23 16
30 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16
31 H 0.40 19.91 7.90 -92.71 -0.73 19.18 16
32 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16
33 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16
34 H 0.34 12.73 6.82 -89.70 -0.61 12.12 16
35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16
36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16
37 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16
38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16
39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16
41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
42 H 0.14 2.59 4.00 -107.60 -0.43 2.16 16
43 H 0.16 2.50 7.75 -2.91 -0.02 2.48 16
44 H 0.20 -0.47 8.06 -2.91 -0.02 -0.50 16
45 H 0.22 -0.40 8.06 -2.91 -0.02 -0.43 16
46 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16
47 H 0.07 2.16 5.81 -2.38 -0.01 2.15 16
Total: -1.00 -82.33 387.13 -0.21 -82.54
By element:
Atomic # 1 Polarization: 40.15 SS G_CDS: -0.74 Total: 39.41 kcal
Atomic # 6 Polarization: 18.43 SS G_CDS: 6.58 Total: 25.01 kcal
Atomic # 7 Polarization: -127.49 SS G_CDS: -7.97 Total: -135.46 kcal
Atomic # 8 Polarization: -57.63 SS G_CDS: -0.11 Total: -57.74 kcal
Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal
Total: -82.33 -0.21 -82.54 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001731527559.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.325 kcal
(2) G-P(sol) polarization free energy of solvation -82.334 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.008 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.207 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.541 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.216 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds