Wall clock time and date at job start Wed Apr 1 2020 05:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86794 * 119.99866 * 2 1 4 4 H 1.48500 * 109.47442 * 270.00089 * 3 2 1 5 5 H 1.48503 * 109.47218 * 30.00271 * 3 2 1 6 6 H 1.48503 * 109.47407 * 149.99822 * 3 2 1 7 7 C 1.38953 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99579 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99868 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99740 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00216 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47315 * 179.97438 * 12 10 9 14 14 C 1.46899 * 110.99757 * 180.02562 * 13 12 10 15 15 C 1.53009 * 109.47111 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.49482 * 304.93545 * 15 14 13 17 17 C 1.53032 * 109.49953 * 184.83522 * 15 14 13 18 18 C 1.53042 * 109.53945 * 178.68074 * 17 15 14 19 19 C 1.53190 * 109.30959 * 61.36637 * 18 17 15 20 20 N 1.46928 * 108.77903 * 305.36686 * 19 18 17 21 21 C 1.34777 * 120.63277 * 233.58943 * 20 19 18 22 22 O 1.21510 * 120.00065 * 172.41005 * 21 20 19 23 23 C 1.48157 * 119.99979 * 352.40858 * 21 20 19 24 24 C 1.39712 * 120.18251 * 170.85494 * 23 21 20 25 25 C 1.38831 * 117.89513 * 179.80340 * 24 23 21 26 26 C 1.38571 * 118.06917 * 0.44532 * 25 24 23 27 27 N 1.32173 * 120.06694 * 359.79134 * 26 25 24 28 28 N 1.28349 * 122.30194 * 359.97375 * 27 26 25 29 29 C 1.46925 * 118.73573 * 53.60566 * 20 19 18 30 30 H 0.96998 * 119.99930 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99727 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47104 * 59.99569 * 12 10 9 33 33 H 1.09006 * 109.47372 * 299.99884 * 12 10 9 34 34 H 1.00895 * 110.99832 * 56.04499 * 13 12 10 35 35 H 1.08995 * 109.47790 * 60.00014 * 14 13 12 36 36 H 1.09003 * 109.47547 * 299.99579 * 14 13 12 37 37 H 1.09007 * 109.46039 * 58.66706 * 17 15 14 38 38 H 1.09001 * 109.46681 * 298.70589 * 17 15 14 39 39 H 1.08998 * 109.49987 * 301.41706 * 18 17 15 40 40 H 1.09003 * 109.49971 * 181.31744 * 18 17 15 41 41 H 1.08998 * 109.58775 * 65.15394 * 19 18 17 42 42 H 1.09001 * 109.58892 * 185.57778 * 19 18 17 43 43 H 1.07993 * 121.05296 * 0.02562 * 24 23 21 44 44 H 1.08001 * 120.96050 * 180.23737 * 25 24 23 45 45 H 1.08001 * 119.96308 * 179.76752 * 26 25 24 46 46 H 1.09000 * 109.58723 * 66.18660 * 29 20 19 47 47 H 1.09007 * 109.58536 * 186.60419 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 1.4981 -7.2708 0.0026 15 6 2.5231 -8.4068 0.0038 16 1 3.2042 -8.2831 -0.8381 17 6 1.7980 -9.7490 -0.1178 18 6 2.8242 -10.8840 -0.1498 19 6 3.6223 -10.8824 1.1577 20 7 4.2045 -9.5479 1.3548 21 6 5.5268 -9.4004 1.5700 22 8 6.0183 -8.2895 1.5941 23 6 6.3811 -10.5931 1.7774 24 6 7.7718 -10.4638 1.8102 25 6 8.5263 -11.6117 2.0115 26 6 7.8556 -12.8154 2.1580 27 7 6.5352 -12.8480 2.1086 28 7 5.8293 -11.7915 1.9275 29 6 3.3178 -8.3771 1.3131 30 1 -0.4850 0.8400 0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6175 -4.9212 -0.8880 33 1 0.6168 -4.9201 0.8920 34 1 2.8333 -5.9120 0.7840 35 1 0.8735 -7.3454 -0.8875 36 1 0.8729 -7.3451 0.8924 37 1 1.2121 -9.7633 -1.0369 38 1 1.1353 -9.8827 0.7372 39 1 3.5026 -10.7376 -0.9903 40 1 2.3083 -11.8379 -0.2600 41 1 2.9599 -11.1186 1.9905 42 1 4.4192 -11.6239 1.1004 43 1 8.2448 -9.5008 1.6866 44 1 9.6047 -11.5682 2.0494 45 1 8.4124 -13.7278 2.3122 46 1 2.6305 -8.4090 2.1586 47 1 3.9137 -7.4655 1.3583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731527559.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:37 Heat of formation + Delta-G solvation = -21.215772 kcal Electronic energy + Delta-G solvation = -29680.181004 eV Core-core repulsion = 25476.873896 eV Total energy + Delta-G solvation = -4203.307108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.44651 -40.95361 -40.16728 -38.95574 -36.86240 -35.90607 -34.55660 -34.18388 -33.41803 -33.27530 -32.23890 -28.80272 -27.62337 -26.65264 -25.74113 -25.39218 -24.92778 -22.72316 -22.02728 -21.10445 -20.65170 -19.92252 -19.12868 -18.18253 -17.84971 -17.77445 -17.33673 -16.87197 -16.80095 -16.48273 -16.06548 -15.91924 -15.65583 -15.44049 -15.28279 -15.19087 -14.82662 -14.59369 -14.35790 -14.21852 -14.04996 -13.88681 -13.65248 -13.47388 -13.12808 -12.85162 -12.77690 -12.43987 -12.22924 -12.12975 -12.09757 -11.87948 -11.74334 -11.52733 -11.46075 -11.35546 -11.26036 -11.04049 -10.46174 -10.34998 -10.03119 -9.75512 -9.32885 -8.48133 -5.96946 -0.66746 -0.33123 1.36634 1.40070 1.48022 1.53226 1.69845 2.03492 2.28199 2.49088 2.68770 2.91085 3.18742 3.29892 3.42936 3.49828 3.68579 3.77485 3.82210 3.86996 3.92831 4.11050 4.12867 4.27899 4.31920 4.36414 4.48968 4.56002 4.61594 4.65274 4.71654 4.73730 4.79931 4.82928 4.90845 4.98223 5.06436 5.13833 5.18191 5.31469 5.39346 5.45356 5.54974 5.88194 6.10511 6.18317 6.34610 6.59035 6.81316 7.11205 7.40530 7.54399 8.10688 8.69228 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.001928 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.903580 B =14522.781940 C =15935.306022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.275 1.275 7 C -0.336 4.336 8 H 0.076 0.924 9 N -0.572 5.572 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.066 3.934 13 N -0.691 5.691 14 C 0.069 3.931 15 C -0.089 4.089 16 H 0.060 0.940 17 C -0.108 4.108 18 C -0.129 4.129 19 C 0.072 3.928 20 N -0.585 5.585 21 C 0.560 3.440 22 O -0.568 6.568 23 C 0.010 3.990 24 C -0.081 4.081 25 C -0.094 4.094 26 C 0.065 3.935 27 N -0.274 5.274 28 N -0.219 5.219 29 C 0.109 3.891 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.340 0.660 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.139 0.861 43 H 0.162 0.838 44 H 0.204 0.796 45 H 0.222 0.778 46 H 0.084 0.916 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.416 -31.507 3.905 32.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.200 1.200 7 C -0.465 4.465 8 H 0.094 0.906 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.067 4.067 13 N -0.323 5.323 14 C -0.059 4.059 15 C -0.109 4.109 16 H 0.079 0.921 17 C -0.146 4.146 18 C -0.167 4.167 19 C -0.050 4.050 20 N -0.316 5.316 21 C 0.346 3.654 22 O -0.446 6.446 23 C -0.135 4.135 24 C -0.110 4.110 25 C -0.123 4.123 26 C -0.098 4.098 27 N -0.115 5.115 28 N -0.065 5.065 29 C -0.013 4.013 30 H 0.088 0.912 31 H 0.231 0.769 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.158 0.842 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.156 0.844 43 H 0.180 0.820 44 H 0.221 0.779 45 H 0.238 0.762 46 H 0.102 0.898 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.008 -31.650 3.323 32.816 hybrid contribution 0.804 2.226 0.757 2.485 sum 8.812 -29.424 4.080 30.985 Atomic orbital electron populations 1.69670 1.06741 1.29326 1.50204 1.26047 0.96607 1.02378 0.96224 0.84924 0.77831 0.76848 0.78688 1.19582 1.19263 1.19982 1.19657 0.92648 0.84138 1.50086 0.90599 1.41915 1.09331 1.04639 1.65034 1.20974 0.88269 0.86356 0.82217 1.90508 1.16098 1.88003 1.56657 1.21543 0.93918 0.87882 1.03312 1.60108 1.19322 1.01456 1.51459 1.22066 0.95204 0.86488 1.02185 1.21423 0.96964 0.95802 0.96666 0.92144 1.21551 0.97644 0.91676 1.03755 1.21930 0.97911 1.00185 0.96707 1.23101 1.00798 0.82923 0.98184 1.48073 1.05873 1.09718 1.67893 1.18151 0.82579 0.87376 0.77286 1.90833 1.73851 1.26641 1.53273 1.22668 0.94647 0.94092 1.02132 1.22661 0.92349 1.02812 0.93205 1.23002 1.04685 0.90791 0.93773 1.25212 0.91874 1.01296 0.91393 1.73094 1.08253 1.20258 1.09941 1.73061 1.30208 0.95344 1.07885 1.21797 0.92676 0.88155 0.98687 0.91235 0.76857 0.87449 0.91304 0.84154 0.89284 0.93296 0.90075 0.90102 0.92961 0.87956 0.90153 0.84428 0.82029 0.77912 0.76158 0.89784 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.49 13.05 21.66 0.28 -50.21 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 0.99 44.21 29.55 68.60 2.03 46.24 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.34 -19.80 9.68 84.04 0.81 -18.98 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -30.51 5.29 -306.99 -1.62 -32.13 16 10 C 0.43 21.85 7.82 87.65 0.69 22.54 16 11 O -0.63 -37.17 15.78 -3.08 -0.05 -37.21 16 12 C 0.07 2.37 6.17 85.55 0.53 2.89 16 13 N -0.69 -23.60 6.12 -517.92 -3.17 -26.78 16 14 C 0.07 1.64 5.15 86.31 0.44 2.08 16 15 C -0.09 -1.99 2.55 -10.72 -0.03 -2.02 16 16 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 17 C -0.11 -1.65 5.17 30.62 0.16 -1.49 16 18 C -0.13 -1.92 6.08 30.67 0.19 -1.73 16 19 C 0.07 1.28 5.91 86.36 0.51 1.79 16 20 N -0.59 -14.24 2.97 -821.95 -2.44 -16.69 16 21 C 0.56 15.76 7.66 86.88 0.67 16.42 16 22 O -0.57 -20.47 15.86 -3.75 -0.06 -20.52 16 23 C 0.01 0.21 6.67 41.99 0.28 0.49 16 24 C -0.08 -1.26 9.73 22.77 0.22 -1.04 16 25 C -0.09 -0.62 10.20 22.49 0.23 -0.39 16 26 C 0.06 0.48 11.31 84.72 0.96 1.44 16 27 N -0.27 -4.34 11.51 -57.15 -0.66 -5.00 16 28 N -0.22 -4.30 7.33 -48.49 -0.36 -4.65 16 29 C 0.11 2.77 5.36 86.36 0.46 3.23 16 30 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.40 19.91 7.90 -92.71 -0.73 19.18 16 32 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 33 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.34 12.73 6.82 -89.70 -0.61 12.12 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.14 2.59 4.00 -107.60 -0.43 2.16 16 43 H 0.16 2.50 7.75 -2.91 -0.02 2.48 16 44 H 0.20 -0.47 8.06 -2.91 -0.02 -0.50 16 45 H 0.22 -0.40 8.06 -2.91 -0.02 -0.43 16 46 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.07 2.16 5.81 -2.38 -0.01 2.15 16 Total: -1.00 -82.33 387.13 -0.21 -82.54 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -0.74 Total: 39.41 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: 6.58 Total: 25.01 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -7.97 Total: -135.46 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -0.11 Total: -57.74 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -82.33 -0.21 -82.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731527559.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.325 kcal (2) G-P(sol) polarization free energy of solvation -82.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds