Wall clock time and date at job start Wed Apr 1 2020 05:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48496 * 109.46681 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99727 * 3 2 1 6 6 H 1.48501 * 109.47100 * 60.00176 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 N 1.46507 * 114.34555 * 139.68292 * 15 14 13 17 17 C 1.34772 * 119.99768 * 111.07728 * 16 15 14 18 18 O 1.21605 * 120.00113 * 0.02562 * 17 16 15 19 19 C 1.47430 * 119.99825 * 180.02562 * 17 16 15 20 20 C 1.41294 * 126.41458 * 359.69314 * 19 17 16 21 21 N 1.30450 * 108.01869 * 179.87753 * 20 19 17 22 22 N 1.39932 * 108.90003 * 0.37876 * 21 20 19 23 23 C 1.46497 * 125.75255 * 179.77295 * 22 21 20 24 24 C 1.53778 * 113.61231 * 194.11387 * 23 22 21 25 25 C 1.53958 * 87.01994 * 220.04701 * 24 23 22 26 26 C 1.53779 * 87.10979 * 25.36484 * 25 24 23 27 27 C 1.34259 * 108.49296 * 359.75779 * 22 21 20 28 28 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 29 29 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 32 32 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 33 33 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 34 34 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 35 35 H 1.09003 * 114.17671 * 272.37856 * 15 14 13 36 36 H 0.97000 * 119.99701 * 291.08193 * 16 15 14 37 37 H 1.08001 * 125.98259 * 359.97438 * 20 19 17 38 38 H 1.08997 * 112.85121 * 325.31025 * 23 22 21 39 39 H 1.08997 * 113.61957 * 334.57282 * 24 23 22 40 40 H 1.09001 * 113.61421 * 105.47241 * 24 23 22 41 41 H 1.08992 * 113.54089 * 270.81273 * 25 24 23 42 42 H 1.09007 * 113.74061 * 139.94218 * 25 24 23 43 43 H 1.08992 * 113.61554 * 220.08784 * 26 25 24 44 44 H 1.09002 * 113.61495 * 89.18071 * 26 25 24 45 45 H 1.07995 * 126.29140 * 180.02562 * 27 22 21 46 46 H 1.09005 * 113.47182 * 253.47069 * 28 13 12 47 47 H 1.08997 * 113.47572 * 23.87318 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 7 1.7178 -8.8246 -1.7306 17 6 2.4155 -9.7888 -2.3629 18 8 3.6176 -9.8752 -2.2007 19 6 1.7214 -10.7389 -3.2512 20 6 0.3368 -10.7669 -3.5315 21 7 0.1127 -11.7485 -4.3609 22 7 1.3238 -12.3915 -4.6400 23 6 1.4958 -13.5463 -5.5249 24 6 2.8590 -14.2414 -5.3726 25 6 2.8618 -14.3945 -6.9045 26 6 1.9325 -13.1702 -6.9507 27 6 2.3017 -11.7714 -3.9604 28 6 1.5119 -7.2629 0.2349 29 1 -0.4850 0.8401 -0.0004 30 1 0.3532 -2.3906 0.0016 31 1 0.6209 -4.9225 0.8949 32 1 0.6128 -4.9187 -0.8850 33 1 1.6587 -6.2059 -2.0786 34 1 3.4443 -6.1531 -1.7540 35 1 3.3617 -8.2554 -0.4780 36 1 0.7588 -8.7559 -1.8597 37 1 -0.4055 -10.0926 -3.1305 38 1 0.6497 -14.2328 -5.4942 39 1 3.6444 -13.5851 -4.9978 40 1 2.8081 -15.1901 -4.8382 41 1 2.3902 -15.3140 -7.2510 42 1 3.8362 -14.2205 -7.3611 43 1 1.1347 -13.2552 -7.6884 44 1 2.4641 -12.2204 -7.0082 45 1 3.3497 -12.0322 -3.9676 46 1 1.6894 -7.6711 1.2299 47 1 0.4551 -7.2465 -0.0315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732102017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:04 Heat of formation + Delta-G solvation = 73.954579 kcal Electronic energy + Delta-G solvation = -28797.719991 eV Core-core repulsion = 24598.539779 eV Total energy + Delta-G solvation = -4199.180212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.93150 -40.47908 -39.25054 -38.54325 -37.62398 -34.17519 -33.77585 -32.22489 -31.23350 -30.79337 -29.62205 -26.56544 -26.28630 -25.86206 -25.38427 -23.93484 -22.68163 -21.78979 -20.51565 -20.21463 -19.73275 -19.20406 -18.44746 -17.86804 -16.53408 -16.50389 -16.40030 -16.05459 -15.58873 -15.19582 -15.09009 -14.87470 -14.65954 -14.40641 -14.12205 -13.83775 -13.60068 -13.50365 -13.19464 -13.00157 -12.84216 -12.79469 -12.56545 -12.23307 -12.04710 -11.59707 -11.53070 -11.46194 -11.37446 -11.16513 -11.14276 -11.05753 -10.60316 -10.31256 -10.18685 -10.02656 -9.96221 -9.47392 -9.20570 -8.93556 -8.79494 -8.17925 -7.92165 -6.38294 -3.78692 1.18698 1.84322 1.87181 3.04247 3.19084 3.27211 3.29354 3.37217 3.52963 3.74578 3.94446 4.01872 4.05862 4.08258 4.24547 4.29700 4.34027 4.49053 4.75906 4.81408 4.85559 4.87735 4.93561 5.02376 5.04896 5.16141 5.20136 5.21761 5.26084 5.31681 5.38262 5.38749 5.57106 5.64557 5.69659 5.72095 5.94383 6.02773 6.12547 6.27871 6.41399 6.42356 6.54936 7.14608 7.16678 7.42573 7.59052 8.10278 8.16104 8.66236 9.22601 9.58648 10.11362 10.79758 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023848 B = 0.001541 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.800627 B =18163.986610 C =18370.265448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.568 5.568 10 C 0.447 3.553 11 O -0.573 6.573 12 C 0.011 3.989 13 N -0.435 5.435 14 C -0.009 4.009 15 C 0.122 3.878 16 N -0.715 5.715 17 C 0.597 3.403 18 O -0.547 6.547 19 C -0.293 4.293 20 C 0.081 3.919 21 N -0.297 5.297 22 N -0.350 5.350 23 C 0.131 3.869 24 C -0.148 4.148 25 C -0.137 4.137 26 C -0.148 4.148 27 C 0.129 3.871 28 C -0.014 4.014 29 H 0.270 0.730 30 H 0.391 0.609 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.399 0.601 37 H 0.189 0.811 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.186 0.814 46 H 0.093 0.907 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 -30.759 -11.713 33.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.205 5.205 10 C 0.231 3.769 11 O -0.456 6.456 12 C -0.121 4.121 13 N -0.157 5.157 14 C -0.139 4.139 15 C 0.016 3.984 16 N -0.365 5.365 17 C 0.385 3.615 18 O -0.425 6.425 19 C -0.308 4.308 20 C -0.107 4.107 21 N -0.115 5.115 22 N -0.128 5.128 23 C 0.029 3.971 24 C -0.187 4.187 25 C -0.175 4.175 26 C -0.186 4.186 27 C -0.023 4.023 28 C -0.144 4.144 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.148 0.852 36 H 0.233 0.767 37 H 0.206 0.794 38 H 0.144 0.856 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.203 0.797 46 H 0.111 0.889 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.362 -31.142 -11.910 33.370 hybrid contribution -1.084 1.361 -0.081 1.742 sum -2.446 -29.781 -11.990 32.198 Atomic orbital electron populations 1.69620 1.05916 1.27947 1.51071 1.25243 0.95632 0.99657 0.97481 0.85806 0.79750 0.81185 0.77649 1.19218 1.20821 1.20780 1.19757 0.93404 0.82230 1.47239 0.87893 1.41867 1.09102 1.04574 1.64994 1.19661 0.88410 0.84376 0.84406 1.90537 1.13641 1.86929 1.54457 1.22498 0.94549 0.92997 1.02061 1.68790 1.30479 0.99886 1.16523 1.24411 1.03658 0.93544 0.92292 1.22670 0.97903 0.87532 0.90283 1.45714 1.11310 1.31821 1.47665 1.17238 0.86207 0.79426 0.78608 1.90788 1.14177 1.73358 1.64168 1.20259 0.94034 1.04802 1.11710 1.24080 0.95238 0.96248 0.95165 1.77179 1.04104 1.10685 1.19571 1.48630 1.04845 1.24453 1.34884 1.23197 0.99813 0.85010 0.89048 1.23500 0.95378 1.01646 0.98136 1.22738 1.01008 0.98473 0.95235 1.23459 1.00128 0.99615 0.95418 1.22860 0.95893 0.91943 0.91575 1.24326 0.97369 0.92158 1.00552 0.92012 0.77589 0.89261 0.92229 0.91198 0.88846 0.85210 0.76704 0.79376 0.85577 0.88609 0.89510 0.89159 0.89843 0.89936 0.89074 0.79690 0.88875 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 9 N -0.57 -14.60 5.29 -10.96 -0.06 -14.66 16 10 C 0.45 10.81 7.85 -10.98 -0.09 10.72 16 11 O -0.57 -16.19 16.01 5.54 0.09 -16.10 16 12 C 0.01 0.20 5.30 -4.98 -0.03 0.17 16 13 N -0.43 -7.25 5.82 -246.13 -1.43 -8.68 16 14 C -0.01 -0.13 7.53 -7.56 -0.06 -0.19 16 15 C 0.12 1.50 4.59 -67.72 -0.31 1.19 16 16 N -0.71 -7.18 5.38 -54.61 -0.29 -7.48 16 17 C 0.60 7.15 7.81 -12.52 -0.10 7.05 16 18 O -0.55 -8.55 16.49 5.27 0.09 -8.46 16 19 C -0.29 -2.90 6.13 -105.06 -0.64 -3.55 16 20 C 0.08 0.69 11.50 -16.98 -0.20 0.49 16 21 N -0.30 -2.89 12.50 30.86 0.39 -2.50 16 22 N -0.35 -2.82 3.77 -53.53 -0.20 -3.02 16 23 C 0.13 0.65 5.01 -67.12 -0.34 0.32 16 24 C -0.15 -0.47 7.45 -25.83 -0.19 -0.66 16 25 C -0.14 -0.33 8.09 -25.83 -0.21 -0.54 16 26 C -0.15 -0.61 7.88 -25.92 -0.20 -0.82 16 27 C 0.13 1.11 10.50 -16.56 -0.17 0.94 16 28 C -0.01 -0.16 7.45 -7.55 -0.06 -0.22 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 31 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 32 H 0.06 0.92 7.30 -51.93 -0.38 0.54 16 33 H 0.07 0.95 7.42 -51.93 -0.39 0.56 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.13 1.82 7.45 -51.93 -0.39 1.44 16 36 H 0.40 2.82 7.71 -40.82 -0.31 2.51 16 37 H 0.19 0.99 7.50 -52.49 -0.39 0.59 16 38 H 0.13 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.32 6.29 -51.93 -0.33 -0.01 16 40 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.19 1.27 6.66 -52.49 -0.35 0.92 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.07 0.67 7.90 -51.93 -0.41 0.25 16 LS Contribution 396.27 15.07 5.97 5.97 Total: -1.00 -36.95 396.27 -9.16 -46.12 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.58 Total: 9.73 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -2.83 Total: 6.82 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.88 Total: -60.40 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: 0.18 Total: -24.56 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.95 -9.16 -46.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732102017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.070 kcal (2) G-P(sol) polarization free energy of solvation -36.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds