Wall clock time and date at job start Wed Apr 1 2020 05:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48496 * 109.46681 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99727 * 3 2 1 6 6 H 1.48501 * 109.47100 * 60.00176 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 N 1.46507 * 114.34555 * 139.68292 * 15 14 13 17 17 C 1.34772 * 119.99768 * 111.07728 * 16 15 14 18 18 O 1.21605 * 120.00113 * 0.02562 * 17 16 15 19 19 C 1.47430 * 119.99825 * 180.02562 * 17 16 15 20 20 C 1.41294 * 126.41458 * 359.69314 * 19 17 16 21 21 N 1.30450 * 108.01869 * 179.87753 * 20 19 17 22 22 N 1.39932 * 108.90003 * 0.37876 * 21 20 19 23 23 C 1.46497 * 125.75255 * 179.77295 * 22 21 20 24 24 C 1.53778 * 113.61231 * 194.11387 * 23 22 21 25 25 C 1.53958 * 87.01994 * 220.04701 * 24 23 22 26 26 C 1.53779 * 87.10979 * 25.36484 * 25 24 23 27 27 C 1.34259 * 108.49296 * 359.75779 * 22 21 20 28 28 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 29 29 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 32 32 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 33 33 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 34 34 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 35 35 H 1.09003 * 114.17671 * 272.37856 * 15 14 13 36 36 H 0.97000 * 119.99701 * 291.08193 * 16 15 14 37 37 H 1.08001 * 125.98259 * 359.97438 * 20 19 17 38 38 H 1.08997 * 112.85121 * 325.31025 * 23 22 21 39 39 H 1.08997 * 113.61957 * 334.57282 * 24 23 22 40 40 H 1.09001 * 113.61421 * 105.47241 * 24 23 22 41 41 H 1.08992 * 113.54089 * 270.81273 * 25 24 23 42 42 H 1.09007 * 113.74061 * 139.94218 * 25 24 23 43 43 H 1.08992 * 113.61554 * 220.08784 * 26 25 24 44 44 H 1.09002 * 113.61495 * 89.18071 * 26 25 24 45 45 H 1.07995 * 126.29140 * 180.02562 * 27 22 21 46 46 H 1.09005 * 113.47182 * 253.47069 * 28 13 12 47 47 H 1.08997 * 113.47572 * 23.87318 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 7 1.7178 -8.8246 -1.7306 17 6 2.4155 -9.7888 -2.3629 18 8 3.6176 -9.8752 -2.2007 19 6 1.7214 -10.7389 -3.2512 20 6 0.3368 -10.7669 -3.5315 21 7 0.1127 -11.7485 -4.3609 22 7 1.3238 -12.3915 -4.6400 23 6 1.4958 -13.5463 -5.5249 24 6 2.8590 -14.2414 -5.3726 25 6 2.8618 -14.3945 -6.9045 26 6 1.9325 -13.1702 -6.9507 27 6 2.3017 -11.7714 -3.9604 28 6 1.5119 -7.2629 0.2349 29 1 -0.4850 0.8401 -0.0004 30 1 0.3532 -2.3906 0.0016 31 1 0.6209 -4.9225 0.8949 32 1 0.6128 -4.9187 -0.8850 33 1 1.6587 -6.2059 -2.0786 34 1 3.4443 -6.1531 -1.7540 35 1 3.3617 -8.2554 -0.4780 36 1 0.7588 -8.7559 -1.8597 37 1 -0.4055 -10.0926 -3.1305 38 1 0.6497 -14.2328 -5.4942 39 1 3.6444 -13.5851 -4.9978 40 1 2.8081 -15.1901 -4.8382 41 1 2.3902 -15.3140 -7.2510 42 1 3.8362 -14.2205 -7.3611 43 1 1.1347 -13.2552 -7.6884 44 1 2.4641 -12.2204 -7.0082 45 1 3.3497 -12.0322 -3.9676 46 1 1.6894 -7.6711 1.2299 47 1 0.4551 -7.2465 -0.0315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732102017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:03 Heat of formation + Delta-G solvation = 44.247247 kcal Electronic energy + Delta-G solvation = -28799.008198 eV Core-core repulsion = 24598.539779 eV Total energy + Delta-G solvation = -4200.468419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.56206 -41.58818 -40.12409 -39.49968 -39.08958 -35.95221 -35.08822 -33.28545 -32.82704 -31.65306 -30.81111 -27.50644 -26.93112 -26.80760 -26.52369 -25.21131 -23.63256 -22.34129 -21.40254 -21.20946 -20.91382 -20.19986 -19.89127 -19.12813 -17.87619 -17.52479 -17.24894 -16.80440 -16.55109 -16.50744 -16.29211 -15.99794 -15.75668 -15.54809 -15.35467 -15.25984 -14.75018 -14.29617 -14.07401 -13.95405 -13.70315 -13.64746 -13.50340 -13.44012 -13.21465 -13.00537 -12.72102 -12.41882 -12.39833 -12.28651 -12.13397 -12.11519 -11.80440 -11.65789 -11.49655 -11.49418 -10.98833 -10.57398 -10.37687 -10.14055 -9.99575 -9.76452 -9.64191 -8.46172 -5.94455 0.48575 1.15045 1.32446 1.36574 1.41614 1.55825 2.07435 2.14792 2.31143 2.42169 2.92084 3.16781 3.20208 3.35086 3.44379 3.57452 3.68058 3.73566 3.77509 3.80153 3.81634 4.03586 4.13678 4.30599 4.32016 4.33750 4.43242 4.50362 4.55330 4.60679 4.68937 4.72232 4.77415 4.83033 4.91888 4.92591 5.00947 5.03121 5.29356 5.35501 5.40686 5.42182 5.49394 5.85695 5.89870 6.09083 6.49107 6.62459 6.64397 7.14789 7.29247 7.58327 8.15748 8.71451 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023848 B = 0.001541 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.800627 B =18163.986610 C =18370.265448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.075 0.925 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.622 6.622 12 C 0.026 3.974 13 N -0.475 5.475 14 C -0.012 4.012 15 C 0.135 3.865 16 N -0.698 5.698 17 C 0.598 3.402 18 O -0.592 6.592 19 C -0.314 4.314 20 C 0.088 3.912 21 N -0.323 5.323 22 N -0.346 5.346 23 C 0.117 3.883 24 C -0.144 4.144 25 C -0.126 4.126 26 C -0.149 4.149 27 C 0.129 3.871 28 C 0.003 3.997 29 H 0.277 0.723 30 H 0.397 0.603 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.417 0.583 37 H 0.219 0.781 38 H 0.135 0.865 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.198 0.802 46 H 0.104 0.896 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.516 -31.968 -12.110 34.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.201 1.201 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.093 0.907 9 N -0.213 5.213 10 C 0.227 3.773 11 O -0.508 6.508 12 C -0.106 4.106 13 N -0.198 5.198 14 C -0.143 4.143 15 C 0.029 3.971 16 N -0.349 5.349 17 C 0.387 3.613 18 O -0.473 6.473 19 C -0.329 4.329 20 C -0.100 4.100 21 N -0.142 5.142 22 N -0.123 5.123 23 C 0.017 3.983 24 C -0.182 4.182 25 C -0.163 4.163 26 C -0.187 4.187 27 C -0.023 4.023 28 C -0.126 4.126 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.255 0.745 37 H 0.235 0.765 38 H 0.152 0.848 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.214 0.786 46 H 0.122 0.878 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.394 -32.378 -12.322 34.809 hybrid contribution -0.465 1.667 -0.006 1.730 sum -3.859 -30.711 -12.328 33.317 Atomic orbital electron populations 1.69668 1.06689 1.29176 1.50501 1.25989 0.96558 1.02222 0.96333 0.84897 0.77937 0.77252 0.78398 1.20108 1.19507 1.19475 1.19674 0.92600 0.84202 1.49889 0.90723 1.41925 1.09281 1.04604 1.65478 1.20896 0.88278 0.86108 0.82048 1.90503 1.16173 1.87973 1.56110 1.22382 0.94088 0.89534 1.04590 1.68712 1.31953 1.01531 1.17575 1.24450 1.02445 0.95217 0.92170 1.22269 0.97753 0.86517 0.90584 1.45488 1.12051 1.30676 1.46704 1.17535 0.85710 0.79647 0.78411 1.90767 1.16166 1.74609 1.65767 1.20176 0.94845 1.05293 1.12549 1.24529 0.95101 0.96058 0.94277 1.77144 1.05176 1.11484 1.20430 1.48901 1.04229 1.24645 1.34570 1.23608 1.01151 0.84514 0.89060 1.23516 0.94034 1.01812 0.98887 1.22735 1.00861 0.98143 0.94599 1.23443 1.00532 0.99830 0.94942 1.23123 0.96598 0.91609 0.91017 1.24345 0.98753 0.88702 1.00793 0.91307 0.76895 0.86684 0.89324 0.89406 0.92375 0.87397 0.74544 0.76451 0.84774 0.88901 0.88365 0.87665 0.89428 0.89690 0.90465 0.78557 0.87818 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.70 13.05 21.66 0.28 -49.42 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 3 Si 0.99 43.66 29.55 68.60 2.03 45.68 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.33 -19.40 9.68 84.04 0.81 -18.58 16 8 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.57 -29.90 5.29 -306.98 -1.62 -31.52 16 10 C 0.44 21.49 7.85 87.66 0.69 22.18 16 11 O -0.62 -36.42 16.01 -3.08 -0.05 -36.47 16 12 C 0.03 0.86 5.30 85.56 0.45 1.32 16 13 N -0.47 -15.33 5.82 -932.63 -5.43 -20.76 16 14 C -0.01 -0.37 7.53 83.57 0.63 0.26 16 15 C 0.14 3.20 4.59 45.44 0.21 3.41 16 16 N -0.70 -12.84 5.38 -444.95 -2.40 -15.24 16 17 C 0.60 13.98 7.81 86.67 0.68 14.66 16 18 O -0.59 -18.91 16.49 -4.05 -0.07 -18.98 16 19 C -0.31 -5.91 6.13 -20.15 -0.12 -6.04 16 20 C 0.09 1.34 11.50 85.65 0.99 2.33 16 21 N -0.32 -5.86 12.50 -56.27 -0.70 -6.56 16 22 N -0.35 -5.25 3.77 -323.26 -1.22 -6.47 16 23 C 0.12 1.03 5.01 45.52 0.23 1.26 16 24 C -0.14 -0.70 7.45 31.18 0.23 -0.47 16 25 C -0.13 -0.40 8.09 31.18 0.25 -0.15 16 26 C -0.15 -1.10 7.88 31.12 0.25 -0.85 16 27 C 0.13 2.16 10.50 84.28 0.88 3.05 16 28 C 0.00 0.06 7.45 83.57 0.62 0.68 16 29 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 30 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 31 H 0.12 3.26 8.08 -2.39 -0.02 3.24 16 32 H 0.09 2.46 7.30 -2.39 -0.02 2.44 16 33 H 0.09 2.22 7.42 -2.39 -0.02 2.21 16 34 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.11 3.10 7.45 -2.39 -0.02 3.08 16 36 H 0.42 4.59 7.71 -92.71 -0.71 3.88 16 37 H 0.22 1.62 7.50 -2.91 -0.02 1.60 16 38 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 0.52 6.29 -2.39 -0.02 0.51 16 40 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 43 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.20 2.65 6.66 -2.91 -0.02 2.63 16 46 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 47 H 0.11 1.48 7.90 -2.39 -0.02 1.46 16 Total: -1.00 -83.16 396.27 -2.33 -85.49 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: -0.42 Total: 31.33 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 7.26 Total: 22.91 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -11.09 Total: -129.96 kcal Atomic # 8 Polarization: -55.33 SS G_CDS: -0.12 Total: -55.44 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -83.16 -2.33 -85.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732102017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.737 kcal (2) G-P(sol) polarization free energy of solvation -83.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds