Wall clock time and date at job start Wed Apr 1 2020 04:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.47474 * 110.99554 * 265.96989 * 13 12 10 15 15 C 1.53515 * 87.93229 * 221.29624 * 14 13 12 16 16 N 1.46494 * 114.17294 * 139.67089 * 15 14 13 17 17 C 1.34772 * 120.00170 * 111.16381 * 16 15 14 18 18 O 1.21284 * 119.99683 * 359.97438 * 17 16 15 19 19 C 1.50704 * 120.00594 * 180.02562 * 17 16 15 20 20 H 1.09004 * 109.42345 * 59.99175 * 19 17 16 21 21 C 1.53021 * 109.42749 * 179.88393 * 19 17 16 22 22 C 1.53415 * 109.71200 * 191.84435 * 21 19 17 23 23 C 1.50885 * 108.15801 * 309.36852 * 22 21 19 24 24 C 1.34567 * 128.32890 * 196.73012 * 23 22 21 25 25 N 1.35197 * 107.61750 * 179.83694 * 24 23 22 26 26 H 0.97002 * 126.00083 * 180.02562 * 25 24 23 27 27 N 1.40308 * 107.99291 * 0.03334 * 25 24 23 28 28 C 1.30124 * 108.12715 * 0.02816 * 27 25 24 29 29 C 1.50948 * 128.29055 * 179.87087 * 28 27 25 30 30 C 1.47483 * 110.99811 * 169.99675 * 13 12 10 31 31 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 33 33 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 34 34 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 35 35 H 1.08995 * 113.47997 * 336.06182 * 14 13 12 36 36 H 1.09002 * 113.47897 * 106.53578 * 14 13 12 37 37 H 1.08999 * 114.17381 * 272.38257 * 15 14 13 38 38 H 0.97003 * 120.00053 * 291.16130 * 16 15 14 39 39 H 1.09003 * 109.42760 * 311.86436 * 21 19 17 40 40 H 1.08996 * 109.42775 * 71.71291 * 21 19 17 41 41 H 1.08998 * 109.71263 * 189.71746 * 22 21 19 42 42 H 1.09000 * 109.79464 * 69.06629 * 22 21 19 43 43 H 1.07999 * 126.18800 * 359.80616 * 24 23 22 44 44 H 1.09001 * 109.71390 * 77.06529 * 29 28 27 45 45 H 1.08997 * 109.75140 * 316.44396 * 29 28 27 46 46 H 1.08998 * 113.47493 * 253.46813 * 30 13 12 47 47 H 1.08998 * 113.47485 * 23.93774 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 7 6.0503 -3.7556 0.0246 14 6 6.3114 -4.2185 1.4003 15 6 7.5873 -4.8898 0.8729 16 7 8.7433 -4.7645 1.7640 17 6 9.2274 -5.8516 2.3966 18 8 8.7057 -6.9335 2.2286 19 6 10.4163 -5.7227 3.3138 20 1 10.1773 -5.0315 4.1221 21 6 10.7572 -7.0941 3.9009 22 6 11.7621 -6.9303 5.0485 23 6 12.9058 -6.0793 4.5543 24 6 14.1300 -5.9320 5.0931 25 7 14.8218 -5.0750 4.3090 26 1 15.7353 -4.7817 4.4524 27 7 13.9864 -4.6844 3.2516 28 6 12.8406 -5.2835 3.3983 29 6 11.6154 -5.1864 2.5220 30 6 7.5060 -3.8024 -0.2078 31 1 -0.4850 0.8401 -0.0004 32 1 3.8648 -0.3633 0.0059 33 1 5.9281 -1.8591 -0.8704 34 1 5.9199 -1.8544 0.9095 35 1 6.5058 -3.4073 2.1019 36 1 5.5689 -4.9264 1.7686 37 1 7.4370 -5.9026 0.4991 38 1 9.1604 -3.8991 1.8987 39 1 9.8487 -7.5624 4.2795 40 1 11.1919 -7.7231 3.1241 41 1 12.1358 -7.9082 5.3523 42 1 11.2793 -6.4420 5.8950 43 1 14.4939 -6.4112 5.9900 44 1 11.7588 -5.7843 1.6219 45 1 11.4398 -4.1461 2.2482 46 1 7.7756 -4.1576 -1.2024 47 1 8.0191 -2.8802 0.0647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732117034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:39 Heat of formation + Delta-G solvation = 43.737556 kcal Electronic energy + Delta-G solvation = -29277.844580 eV Core-core repulsion = 25077.354059 eV Total energy + Delta-G solvation = -4200.490521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.94770 -40.74793 -39.49359 -37.91483 -36.45653 -34.32627 -33.86088 -32.63702 -31.66841 -31.22992 -29.87965 -28.89759 -26.05191 -25.96760 -25.16882 -23.63305 -22.46885 -21.48976 -20.69535 -20.17235 -19.37152 -19.26583 -18.37597 -18.05888 -17.29634 -16.65075 -16.15241 -15.82818 -15.40665 -15.25064 -15.15173 -14.87625 -14.59579 -14.26194 -14.09093 -14.02424 -13.56622 -13.41911 -13.25550 -13.14435 -12.86293 -12.69889 -12.45657 -12.36613 -12.17331 -11.84523 -11.66621 -11.59063 -11.31574 -11.24181 -11.17888 -10.74110 -10.69164 -10.59279 -10.02570 -9.95805 -9.85513 -9.54543 -9.21436 -8.92736 -8.87383 -8.33399 -8.15574 -6.28857 -3.80152 1.44780 2.25254 2.30321 2.47054 2.85180 3.01957 3.06983 3.15144 3.75542 3.89548 3.99208 4.11348 4.20181 4.32800 4.39742 4.45635 4.61289 4.73416 4.76280 4.82257 4.91678 4.98360 5.08702 5.11261 5.15791 5.23382 5.26468 5.34015 5.46463 5.48240 5.50123 5.55088 5.60532 5.71963 5.79988 5.83369 5.92488 5.95172 6.01981 6.19953 6.27783 6.40242 6.82623 7.00683 7.21548 7.24963 7.60145 7.99031 8.16689 8.62776 8.98003 9.44677 9.86673 10.84439 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.001723 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.287654 B =16242.849125 C =16884.208946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.040 3.960 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.594 5.594 10 C 0.455 3.545 11 O -0.554 6.554 12 C 0.008 3.992 13 N -0.434 5.434 14 C -0.010 4.010 15 C 0.118 3.882 16 N -0.719 5.719 17 C 0.521 3.479 18 O -0.530 6.530 19 C -0.102 4.102 20 H 0.103 0.897 21 C -0.099 4.099 22 C -0.041 4.041 23 C -0.235 4.235 24 C 0.061 3.939 25 N -0.485 5.485 26 H 0.439 0.561 27 N -0.286 5.286 28 C 0.084 3.916 29 C -0.029 4.029 30 C -0.014 4.014 31 H 0.273 0.727 32 H 0.369 0.631 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.131 0.869 38 H 0.400 0.600 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.177 0.823 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.121 -7.869 10.925 35.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.234 5.234 10 C 0.240 3.760 11 O -0.435 6.435 12 C -0.124 4.124 13 N -0.156 5.156 14 C -0.140 4.140 15 C 0.013 3.987 16 N -0.370 5.370 17 C 0.307 3.693 18 O -0.405 6.405 19 C -0.124 4.124 20 H 0.121 0.879 21 C -0.137 4.137 22 C -0.080 4.080 23 C -0.247 4.247 24 C -0.085 4.085 25 N -0.193 5.193 26 H 0.283 0.717 27 N -0.108 5.108 28 C -0.085 4.085 29 C -0.068 4.068 30 C -0.144 4.144 31 H 0.083 0.917 32 H 0.202 0.798 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.149 0.851 38 H 0.235 0.765 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.194 0.806 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.112 0.888 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 32.296 -8.807 9.643 34.836 hybrid contribution 1.394 2.280 1.239 2.946 sum 33.690 -6.527 10.883 36.001 Atomic orbital electron populations 1.69624 1.05612 1.27411 1.49606 1.25034 0.95488 0.97913 0.97793 0.86667 0.79684 0.84121 0.78845 1.19636 1.20227 1.19637 1.19433 0.79236 0.96630 1.47932 0.86294 1.42213 1.07513 1.06052 1.67661 1.19549 0.87833 0.84592 0.84033 1.90579 1.69192 1.30894 1.52786 1.22536 0.96774 0.90978 1.02122 1.68796 1.11230 1.18762 1.16844 1.24425 0.97295 1.00090 0.92170 1.22693 0.84555 1.01181 0.90274 1.46020 1.32790 1.11061 1.47139 1.20544 0.84399 0.84100 0.80288 1.90735 1.60197 1.26822 1.62781 1.21367 0.92435 1.00705 0.97930 0.87889 1.21402 0.99695 0.94675 0.97944 1.20045 0.92349 0.98105 0.97476 1.20182 0.97041 1.07729 0.99730 1.22100 0.93003 0.95602 0.97803 1.46339 1.14734 1.37738 1.20501 0.71669 1.77026 1.02315 1.23077 1.08413 1.22162 0.94164 0.95914 0.96235 1.20021 0.87830 1.02620 0.96343 1.24329 0.91391 0.97987 1.00688 0.91659 0.79830 0.89125 0.92141 0.91188 0.88692 0.85137 0.76537 0.89992 0.91003 0.90703 0.90980 0.80632 0.89061 0.89391 0.88768 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.97 13.96 55.50 0.77 -25.19 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.38 27.74 -169.99 -4.72 14.67 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.39 6.51 56.52 0.37 -5.03 16 7 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 8 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 9 N -0.59 -14.25 5.09 -10.96 -0.06 -14.30 16 10 C 0.45 10.48 7.85 -10.98 -0.09 10.39 16 11 O -0.55 -15.35 16.01 5.55 0.09 -15.26 16 12 C 0.01 0.13 5.30 -4.97 -0.03 0.11 16 13 N -0.43 -6.76 5.82 -246.08 -1.43 -8.19 16 14 C -0.01 -0.13 7.52 -7.54 -0.06 -0.19 16 15 C 0.12 1.31 4.59 -67.72 -0.31 1.00 16 16 N -0.72 -5.98 5.29 -53.54 -0.28 -6.26 16 17 C 0.52 5.03 7.14 -10.99 -0.08 4.95 16 18 O -0.53 -7.34 15.36 5.55 0.09 -7.25 16 19 C -0.10 -0.70 2.47 -91.56 -0.23 -0.93 16 20 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16 21 C -0.10 -0.71 4.65 -26.51 -0.12 -0.84 16 22 C -0.04 -0.23 6.28 -27.58 -0.17 -0.41 16 23 C -0.24 -1.61 5.89 -104.98 -0.62 -2.23 16 24 C 0.06 0.31 11.95 -17.37 -0.21 0.11 16 25 N -0.48 -2.88 7.37 30.35 0.22 -2.66 16 26 H 0.44 1.23 8.96 -182.44 -1.64 -0.40 16 27 N -0.29 -2.59 12.68 33.75 0.43 -2.16 16 28 C 0.08 0.68 7.10 -82.35 -0.58 0.10 16 29 C -0.03 -0.19 5.43 -27.57 -0.15 -0.34 16 30 C -0.01 -0.15 7.45 -7.53 -0.06 -0.20 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 33 H 0.09 1.27 8.08 -51.93 -0.42 0.85 16 34 H 0.06 0.83 7.30 -51.93 -0.38 0.45 16 35 H 0.07 0.85 7.42 -51.93 -0.39 0.47 16 36 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.13 1.69 7.46 -51.93 -0.39 1.31 16 38 H 0.40 2.21 8.38 -40.82 -0.34 1.87 16 39 H 0.08 0.66 7.68 -51.93 -0.40 0.26 16 40 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.18 0.28 8.06 -52.49 -0.42 -0.14 16 44 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 45 H 0.09 0.45 7.86 -51.93 -0.41 0.05 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.07 0.58 7.90 -51.93 -0.41 0.17 16 LS Contribution 386.77 15.07 5.83 5.83 Total: -1.00 -38.40 386.77 -9.94 -48.34 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.93 Total: 8.74 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.94 Total: 3.71 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.35 Total: -58.77 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.17 Total: -22.51 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.72 Total: 14.67 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.40 -9.94 -48.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732117034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.073 kcal (2) G-P(sol) polarization free energy of solvation -38.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds