Wall clock time and date at job start Wed Apr 1 2020 04:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.47474 * 110.99554 * 265.96989 * 13 12 10 15 15 C 1.53515 * 87.93229 * 221.29624 * 14 13 12 16 16 N 1.46494 * 114.17294 * 139.67089 * 15 14 13 17 17 C 1.34772 * 120.00170 * 111.16381 * 16 15 14 18 18 O 1.21284 * 119.99683 * 359.97438 * 17 16 15 19 19 C 1.50704 * 120.00594 * 180.02562 * 17 16 15 20 20 H 1.09004 * 109.42345 * 59.99175 * 19 17 16 21 21 C 1.53021 * 109.42749 * 179.88393 * 19 17 16 22 22 C 1.53415 * 109.71200 * 191.84435 * 21 19 17 23 23 C 1.50885 * 108.15801 * 309.36852 * 22 21 19 24 24 C 1.34567 * 128.32890 * 196.73012 * 23 22 21 25 25 N 1.35197 * 107.61750 * 179.83694 * 24 23 22 26 26 H 0.97002 * 126.00083 * 180.02562 * 25 24 23 27 27 N 1.40308 * 107.99291 * 0.03334 * 25 24 23 28 28 C 1.30124 * 108.12715 * 0.02816 * 27 25 24 29 29 C 1.50948 * 128.29055 * 179.87087 * 28 27 25 30 30 C 1.47483 * 110.99811 * 169.99675 * 13 12 10 31 31 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 33 33 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 34 34 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 35 35 H 1.08995 * 113.47997 * 336.06182 * 14 13 12 36 36 H 1.09002 * 113.47897 * 106.53578 * 14 13 12 37 37 H 1.08999 * 114.17381 * 272.38257 * 15 14 13 38 38 H 0.97003 * 120.00053 * 291.16130 * 16 15 14 39 39 H 1.09003 * 109.42760 * 311.86436 * 21 19 17 40 40 H 1.08996 * 109.42775 * 71.71291 * 21 19 17 41 41 H 1.08998 * 109.71263 * 189.71746 * 22 21 19 42 42 H 1.09000 * 109.79464 * 69.06629 * 22 21 19 43 43 H 1.07999 * 126.18800 * 359.80616 * 24 23 22 44 44 H 1.09001 * 109.71390 * 77.06529 * 29 28 27 45 45 H 1.08997 * 109.75140 * 316.44396 * 29 28 27 46 46 H 1.08998 * 113.47493 * 253.46813 * 30 13 12 47 47 H 1.08998 * 113.47485 * 23.93774 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 7 6.0503 -3.7556 0.0246 14 6 6.3114 -4.2185 1.4003 15 6 7.5873 -4.8898 0.8729 16 7 8.7433 -4.7645 1.7640 17 6 9.2274 -5.8516 2.3966 18 8 8.7057 -6.9335 2.2286 19 6 10.4163 -5.7227 3.3138 20 1 10.1773 -5.0315 4.1221 21 6 10.7572 -7.0941 3.9009 22 6 11.7621 -6.9303 5.0485 23 6 12.9058 -6.0793 4.5543 24 6 14.1300 -5.9320 5.0931 25 7 14.8218 -5.0750 4.3090 26 1 15.7353 -4.7817 4.4524 27 7 13.9864 -4.6844 3.2516 28 6 12.8406 -5.2835 3.3983 29 6 11.6154 -5.1864 2.5220 30 6 7.5060 -3.8024 -0.2078 31 1 -0.4850 0.8401 -0.0004 32 1 3.8648 -0.3633 0.0059 33 1 5.9281 -1.8591 -0.8704 34 1 5.9199 -1.8544 0.9095 35 1 6.5058 -3.4073 2.1019 36 1 5.5689 -4.9264 1.7686 37 1 7.4370 -5.9026 0.4991 38 1 9.1604 -3.8991 1.8987 39 1 9.8487 -7.5624 4.2795 40 1 11.1919 -7.7231 3.1241 41 1 12.1358 -7.9082 5.3523 42 1 11.2793 -6.4420 5.8950 43 1 14.4939 -6.4112 5.9900 44 1 11.7588 -5.7843 1.6219 45 1 11.4398 -4.1461 2.2482 46 1 7.7756 -4.1576 -1.2024 47 1 8.0191 -2.8802 0.0647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732117034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:38 Heat of formation + Delta-G solvation = 10.089234 kcal Electronic energy + Delta-G solvation = -29279.303681 eV Core-core repulsion = 25077.354059 eV Total energy + Delta-G solvation = -4201.949621 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.42327 -41.70792 -40.51042 -39.60875 -37.06096 -35.99662 -35.13251 -33.75003 -33.12538 -31.89196 -30.96449 -29.41165 -27.46468 -26.92953 -26.11811 -24.87337 -23.22354 -21.92529 -21.50563 -21.28129 -20.99668 -20.25440 -19.79455 -18.51455 -18.00759 -17.84240 -17.60049 -16.72701 -16.57879 -16.50838 -16.07636 -15.86172 -15.64657 -15.23108 -14.98983 -14.80574 -14.65605 -14.61154 -14.43544 -14.08767 -13.91218 -13.74663 -13.63458 -13.55823 -13.06945 -12.88259 -12.73126 -12.41794 -12.39354 -12.25465 -12.13354 -11.95931 -11.85619 -11.78812 -11.49684 -11.20717 -10.86116 -10.45857 -10.34497 -10.23762 -10.06049 -9.75846 -9.30519 -8.40339 -6.01659 1.01690 1.30084 1.37080 1.45691 1.57658 1.79989 1.97599 2.00323 2.12510 2.24258 2.74600 3.14630 3.25021 3.40267 3.50799 3.71090 3.79890 3.86385 3.98732 4.08743 4.12592 4.21702 4.29013 4.37689 4.41554 4.43278 4.47523 4.50962 4.65368 4.70494 4.74329 4.82827 4.88755 4.96684 5.01102 5.11771 5.27401 5.29197 5.34856 5.40241 5.46994 5.55111 5.74236 5.91189 6.02705 6.51980 6.56679 6.61113 6.75978 6.89890 7.27473 7.41205 8.00441 8.77662 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.001723 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.287654 B =16242.849125 C =16884.208946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.018 4.018 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.228 1.228 7 C -0.330 4.330 8 H 0.050 0.950 9 N -0.592 5.592 10 C 0.449 3.551 11 O -0.613 6.613 12 C 0.022 3.978 13 N -0.480 5.480 14 C -0.013 4.013 15 C 0.130 3.870 16 N -0.701 5.701 17 C 0.521 3.479 18 O -0.578 6.578 19 C -0.089 4.089 20 H 0.122 0.878 21 C -0.099 4.099 22 C -0.033 4.033 23 C -0.259 4.259 24 C 0.073 3.927 25 N -0.480 5.480 26 H 0.451 0.549 27 N -0.324 5.324 28 C 0.071 3.929 29 C -0.024 4.024 30 C 0.004 3.996 31 H 0.279 0.721 32 H 0.390 0.610 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.419 0.581 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.213 0.787 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.642 -4.875 11.968 39.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.216 4.216 3 Si 0.788 3.212 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.151 1.151 7 C -0.459 4.459 8 H 0.069 0.931 9 N -0.235 5.235 10 C 0.237 3.763 11 O -0.497 6.497 12 C -0.109 4.109 13 N -0.203 5.203 14 C -0.144 4.144 15 C 0.024 3.976 16 N -0.354 5.354 17 C 0.308 3.692 18 O -0.456 6.456 19 C -0.111 4.111 20 H 0.140 0.860 21 C -0.137 4.137 22 C -0.071 4.071 23 C -0.271 4.271 24 C -0.073 4.073 25 N -0.190 5.190 26 H 0.297 0.703 27 N -0.148 5.148 28 C -0.097 4.097 29 C -0.064 4.064 30 C -0.124 4.124 31 H 0.088 0.912 32 H 0.226 0.774 33 H 0.143 0.857 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.257 0.743 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.230 0.770 44 H 0.102 0.898 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 36.884 -5.781 10.686 38.834 hybrid contribution -0.053 1.171 0.938 1.501 sum 36.831 -4.610 11.624 38.896 Atomic orbital electron populations 1.69819 1.08259 1.29253 1.50394 1.26177 0.96511 1.02875 0.96034 0.85316 0.79517 0.76363 0.79978 1.18106 1.20100 1.15100 1.18993 0.81672 0.94816 1.50460 0.93148 1.42024 1.05690 1.07571 1.68174 1.21014 0.91056 0.83209 0.81030 1.90556 1.71433 1.33084 1.54606 1.22483 0.90624 0.92366 1.05468 1.68704 1.14924 1.18724 1.17940 1.24471 0.97435 1.00316 0.92147 1.22268 0.84428 1.00177 0.90757 1.45816 1.31658 1.11798 1.46080 1.21063 0.84631 0.83492 0.79995 1.90725 1.61790 1.28762 1.64372 1.21295 0.91231 1.00958 0.97627 0.86043 1.21370 0.99511 0.94615 0.98249 1.19990 0.91609 0.98687 0.96799 1.20417 0.98163 1.08447 1.00024 1.22678 0.92225 0.94299 0.98123 1.46407 1.15188 1.37558 1.19879 0.70272 1.76944 1.03113 1.24562 1.10138 1.22384 0.94299 0.96159 0.96879 1.19999 0.87163 1.03459 0.95740 1.24340 0.88250 0.99082 1.00769 0.91171 0.77393 0.85715 0.88322 0.88896 0.92696 0.87768 0.74280 0.91368 0.92495 0.89675 0.90003 0.77019 0.89805 0.87608 0.87995 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.15 13.96 21.66 0.30 -56.85 16 2 C -0.02 -0.99 5.50 84.93 0.47 -0.53 16 3 Si 0.97 38.52 27.74 68.60 1.90 40.42 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.23 -7.44 6.51 99.48 0.65 -6.79 16 7 C -0.33 -19.68 10.16 84.04 0.85 -18.83 16 8 H 0.05 3.61 7.39 -2.91 -0.02 3.59 16 9 N -0.59 -28.07 5.09 -306.97 -1.56 -29.64 16 10 C 0.45 20.66 7.85 87.66 0.69 21.35 16 11 O -0.61 -35.70 16.01 -3.07 -0.05 -35.75 16 12 C 0.02 0.65 5.30 85.56 0.45 1.10 16 13 N -0.48 -14.16 5.82 -932.46 -5.43 -19.59 16 14 C -0.01 -0.36 7.52 83.58 0.63 0.27 16 15 C 0.13 2.72 4.59 45.45 0.21 2.93 16 16 N -0.70 -10.11 5.29 -441.69 -2.34 -12.44 16 17 C 0.52 9.63 7.14 87.66 0.63 10.26 16 18 O -0.58 -16.49 15.36 -3.04 -0.05 -16.53 16 19 C -0.09 -1.10 2.47 -11.41 -0.03 -1.13 16 20 H 0.12 1.08 8.10 -2.38 -0.02 1.06 16 21 C -0.10 -1.38 4.65 30.74 0.14 -1.24 16 22 C -0.03 -0.31 6.28 30.05 0.19 -0.12 16 23 C -0.26 -3.00 5.89 -20.10 -0.12 -3.12 16 24 C 0.07 0.55 11.95 83.33 1.00 1.54 16 25 N -0.48 -4.66 7.37 -57.89 -0.43 -5.08 16 26 H 0.45 1.57 8.96 -213.18 -1.91 -0.35 16 27 N -0.32 -5.33 12.68 -47.13 -0.60 -5.93 16 28 C 0.07 1.03 7.10 43.44 0.31 1.34 16 29 C -0.02 -0.28 5.43 30.05 0.16 -0.11 16 30 C 0.00 0.08 7.45 83.58 0.62 0.70 16 31 H 0.28 15.50 8.31 -92.70 -0.77 14.73 16 32 H 0.39 14.95 5.76 -92.71 -0.53 14.41 16 33 H 0.12 2.83 8.08 -2.38 -0.02 2.81 16 34 H 0.10 2.17 7.30 -2.39 -0.02 2.15 16 35 H 0.09 2.00 7.42 -2.39 -0.02 1.98 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 2.79 7.46 -2.39 -0.02 2.77 16 38 H 0.42 2.95 8.38 -92.71 -0.78 2.17 16 39 H 0.07 1.13 7.68 -2.39 -0.02 1.11 16 40 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 41 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 42 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.21 -0.17 8.06 -2.91 -0.02 -0.20 16 44 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 45 H 0.11 0.78 7.86 -2.39 -0.02 0.76 16 46 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.11 1.12 7.90 -2.39 -0.02 1.10 16 Total: -1.00 -93.79 386.77 -4.28 -98.07 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: -2.24 Total: 28.88 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 6.20 Total: 14.44 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -10.05 Total: -129.53 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.10 Total: -52.28 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -93.79 -4.28 -98.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732117034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.158 kcal (2) G-P(sol) polarization free energy of solvation -93.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds