Wall clock time and date at job start Wed Apr 1 2020 04:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10 15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12 16 16 N 1.46500 * 114.16958 * 139.67037 * 15 14 13 17 17 C 1.34775 * 120.00092 * 111.15664 * 16 15 14 18 18 O 1.21605 * 120.00092 * 0.02562 * 17 16 15 19 19 C 1.47410 * 120.00159 * 179.97438 * 17 16 15 20 20 N 1.31869 * 125.93799 * 0.03212 * 19 17 16 21 21 C 1.33365 * 109.15940 * 179.97438 * 20 19 17 22 22 C 1.34872 * 108.15604 * 359.97438 * 21 20 19 23 23 N 1.35665 * 107.37113 * 359.80791 * 22 21 20 24 24 C 1.46456 * 124.57014 * 179.43466 * 23 22 21 25 25 C 1.53275 * 108.82376 * 343.34837 * 24 23 22 26 26 C 1.53147 * 109.60482 * 50.28062 * 25 24 23 27 27 C 1.50764 * 128.32213 * 180.02562 * 22 21 20 28 28 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 29 29 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.08999 * 113.47664 * 336.06792 * 14 13 12 34 34 H 1.08994 * 113.47488 * 106.52987 * 14 13 12 35 35 H 1.08999 * 114.16922 * 272.37539 * 15 14 13 36 36 H 0.97003 * 120.00179 * 291.16008 * 16 15 14 37 37 H 1.07999 * 125.92111 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.75037 * 223.43253 * 24 23 22 39 39 H 1.09000 * 109.48359 * 103.11151 * 24 23 22 40 40 H 1.09001 * 109.45110 * 290.24015 * 25 24 23 41 41 H 1.09001 * 109.44864 * 170.31759 * 25 24 23 42 42 H 1.09000 * 109.50904 * 170.59014 * 26 25 24 43 43 H 1.09000 * 109.50994 * 50.45187 * 26 25 24 44 44 H 1.09007 * 109.73145 * 283.91651 * 27 22 21 45 45 H 1.08995 * 109.73342 * 44.59782 * 27 22 21 46 46 H 1.08994 * 113.48196 * 253.46980 * 28 13 12 47 47 H 1.09003 * 113.47819 * 23.94188 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.4686 -6.4434 -1.3753 15 6 2.4122 -7.8815 -0.8411 16 7 1.7254 -8.8242 -1.7276 17 6 2.4246 -9.7899 -2.3561 18 8 3.6255 -9.8790 -2.1869 19 6 1.7335 -10.7387 -3.2477 20 7 0.4421 -10.7500 -3.5142 21 6 0.1784 -11.7472 -4.3596 22 6 1.3360 -12.3824 -4.6345 23 7 2.3182 -11.7516 -3.9432 24 6 3.7293 -12.1430 -3.9603 25 6 3.8407 -13.5681 -4.5135 26 6 3.0627 -13.6710 -5.8286 27 6 1.5594 -13.5704 -5.5355 28 6 1.5115 -7.2624 0.2370 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6170 -4.9209 0.8886 32 1 0.6176 -4.9205 -0.8913 33 1 1.6687 -6.2094 -2.0777 34 1 3.4527 -6.1559 -1.7451 35 1 3.3646 -8.2559 -0.4659 36 1 0.7674 -8.7533 -1.8623 37 1 -0.7936 -12.0019 -4.7555 38 1 4.1326 -12.1114 -2.9481 39 1 4.2888 -11.4586 -4.5980 40 1 3.4266 -14.2714 -3.7909 41 1 4.8890 -13.8071 -4.6924 42 1 3.2774 -14.6278 -6.3046 43 1 3.3600 -12.8588 -6.4920 44 1 1.2194 -14.4787 -5.0379 45 1 1.0112 -13.4336 -6.4676 46 1 1.6845 -7.6690 1.2333 47 1 0.4561 -7.2470 -0.0353 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732117111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:04 Heat of formation + Delta-G solvation = 28.564659 kcal Electronic energy + Delta-G solvation = -29382.597680 eV Core-core repulsion = 25181.449213 eV Total energy + Delta-G solvation = -4201.148467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.89140 -40.56686 -38.98590 -37.66327 -37.20863 -34.33009 -33.79985 -33.33974 -31.28727 -31.11198 -29.94405 -28.47161 -25.90891 -25.74174 -24.93355 -24.09765 -22.95644 -22.34607 -20.76644 -20.33141 -19.40888 -19.21034 -18.03131 -17.85605 -16.80827 -16.57315 -16.16552 -16.06223 -15.33022 -15.22922 -14.81484 -14.75120 -14.63759 -14.57095 -14.35388 -14.18637 -14.05747 -13.83421 -13.62980 -13.21088 -12.88792 -12.61927 -12.50768 -12.25404 -11.70918 -11.64776 -11.60822 -11.56513 -11.49258 -11.20736 -11.02677 -10.64160 -10.55262 -10.45155 -10.40985 -10.17361 -10.03746 -9.45353 -9.26921 -8.84141 -8.71305 -8.18755 -7.92081 -6.37772 -3.78443 1.04911 2.05164 2.24973 2.96584 3.13547 3.23142 3.28240 3.33075 3.88961 3.93787 3.97922 4.03141 4.13031 4.15149 4.25618 4.29227 4.41895 4.71904 4.76771 4.81856 4.83229 4.90139 4.99789 5.11351 5.16974 5.18630 5.21363 5.31424 5.32449 5.36078 5.37710 5.55608 5.59572 5.67935 5.71541 5.83832 5.93236 6.05893 6.20484 6.26266 6.32208 6.51743 6.57074 7.09087 7.16255 7.51958 7.58798 7.88485 8.09846 8.66378 9.22418 9.58630 10.11330 10.80058 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025483 B = 0.001663 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.519814 B =16834.949348 C =17000.660575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.446 3.554 11 O -0.574 6.574 12 C 0.011 3.989 13 N -0.434 5.434 14 C -0.008 4.008 15 C 0.118 3.882 16 N -0.692 5.692 17 C 0.611 3.389 18 O -0.538 6.538 19 C 0.141 3.859 20 N -0.445 5.445 21 C -0.022 4.022 22 C 0.001 3.999 23 N -0.408 5.408 24 C 0.101 3.899 25 C -0.136 4.136 26 C -0.128 4.128 27 C -0.048 4.048 28 C -0.013 4.013 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.412 0.588 37 H 0.178 0.822 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 -31.013 -10.948 32.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.231 3.769 11 O -0.457 6.457 12 C -0.122 4.122 13 N -0.156 5.156 14 C -0.138 4.138 15 C 0.013 3.987 16 N -0.343 5.343 17 C 0.395 3.605 18 O -0.414 6.414 19 C -0.118 4.118 20 N -0.167 5.167 21 C -0.175 4.175 22 C -0.119 4.119 23 N -0.089 5.089 24 C -0.021 4.021 25 C -0.174 4.174 26 C -0.166 4.166 27 C -0.087 4.087 28 C -0.142 4.142 29 H 0.081 0.919 30 H 0.224 0.776 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.150 0.850 36 H 0.249 0.751 37 H 0.195 0.805 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.837 -30.043 -9.977 31.667 hybrid contribution -1.029 0.315 -0.935 1.425 sum -0.192 -29.727 -10.912 31.667 Atomic orbital electron populations 1.69606 1.05901 1.28175 1.50821 1.25245 0.95640 0.99661 0.97435 0.85918 0.78744 0.80497 0.79058 1.19962 1.21006 1.19903 1.19650 0.93336 0.82245 1.47543 0.88010 1.41856 1.09116 1.04549 1.64903 1.19643 0.88394 0.84364 0.84473 1.90532 1.13636 1.86933 1.54585 1.22509 0.94549 0.92917 1.02189 1.68804 1.30372 0.99908 1.16494 1.24417 1.03849 0.93054 0.92502 1.22809 0.98007 0.87478 0.90382 1.45627 1.12388 1.30349 1.45957 1.16457 0.85699 0.79580 0.78793 1.90828 1.13532 1.73084 1.63939 1.22447 0.89203 0.96239 1.03878 1.70373 1.11109 1.20496 1.14674 1.22010 0.98079 0.95660 1.01734 1.21367 0.89006 1.00135 1.01415 1.44980 1.09019 1.22642 1.32276 1.22204 0.78022 0.96969 1.04870 1.21958 1.02472 0.95071 0.97898 1.21703 0.94333 1.03358 0.97207 1.20328 0.97112 0.93486 0.97731 1.24327 0.97511 0.92010 1.00400 0.91888 0.77552 0.89157 0.92112 0.90962 0.88703 0.84996 0.75109 0.80509 0.87599 0.89049 0.90635 0.89038 0.90148 0.91120 0.89485 0.88934 0.88666 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.30 -8.49 9.68 -14.94 -0.14 -8.63 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.57 -14.67 5.29 -10.96 -0.06 -14.72 16 10 C 0.45 10.86 7.85 -10.98 -0.09 10.78 16 11 O -0.57 -16.23 16.01 5.55 0.09 -16.14 16 12 C 0.01 0.19 5.30 -4.97 -0.03 0.16 16 13 N -0.43 -7.29 5.82 -246.09 -1.43 -8.72 16 14 C -0.01 -0.12 7.52 -7.54 -0.06 -0.18 16 15 C 0.12 1.49 4.59 -67.72 -0.31 1.18 16 16 N -0.69 -7.92 5.38 -54.62 -0.29 -8.21 16 17 C 0.61 7.86 7.81 -12.53 -0.10 7.76 16 18 O -0.54 -7.99 14.84 5.27 0.08 -7.91 16 19 C 0.14 1.69 7.82 -154.86 -1.21 0.48 16 20 N -0.44 -5.18 10.92 -11.45 -0.12 -5.31 16 21 C -0.02 -0.20 11.82 -18.08 -0.21 -0.41 16 22 C 0.00 0.01 6.57 -82.06 -0.54 -0.53 16 23 N -0.41 -3.99 3.14 -110.07 -0.35 -4.34 16 24 C 0.10 0.76 6.10 -3.92 -0.02 0.74 16 25 C -0.14 -0.60 5.93 -26.51 -0.16 -0.76 16 26 C -0.13 -0.48 5.97 -26.40 -0.16 -0.64 16 27 C -0.05 -0.21 6.31 -27.60 -0.17 -0.38 16 28 C -0.01 -0.15 7.45 -7.54 -0.06 -0.21 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 31 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 32 H 0.06 0.96 7.30 -51.93 -0.38 0.59 16 33 H 0.07 1.02 7.42 -51.93 -0.39 0.63 16 34 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 35 H 0.13 1.80 7.45 -51.93 -0.39 1.42 16 36 H 0.41 4.16 8.44 -40.82 -0.34 3.81 16 37 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.11 0.90 7.28 -51.93 -0.38 0.52 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 41 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 44 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 45 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.07 0.75 7.90 -51.93 -0.41 0.34 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -35.54 390.05 -10.62 -46.16 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -6.76 Total: 11.23 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -3.35 Total: 9.84 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -1.53 Total: -65.46 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: 0.17 Total: -24.05 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.54 -10.62 -46.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732117111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.723 kcal (2) G-P(sol) polarization free energy of solvation -35.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds