Wall clock time and date at job start Wed Apr 1 2020 04:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10 15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12 16 16 N 1.46500 * 114.16958 * 139.67037 * 15 14 13 17 17 C 1.34775 * 120.00092 * 111.15664 * 16 15 14 18 18 O 1.21605 * 120.00092 * 0.02562 * 17 16 15 19 19 C 1.47410 * 120.00159 * 179.97438 * 17 16 15 20 20 N 1.31869 * 125.93799 * 0.03212 * 19 17 16 21 21 C 1.33365 * 109.15940 * 179.97438 * 20 19 17 22 22 C 1.34872 * 108.15604 * 359.97438 * 21 20 19 23 23 N 1.35665 * 107.37113 * 359.80791 * 22 21 20 24 24 C 1.46456 * 124.57014 * 179.43466 * 23 22 21 25 25 C 1.53275 * 108.82376 * 343.34837 * 24 23 22 26 26 C 1.53147 * 109.60482 * 50.28062 * 25 24 23 27 27 C 1.50764 * 128.32213 * 180.02562 * 22 21 20 28 28 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 29 29 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.08999 * 113.47664 * 336.06792 * 14 13 12 34 34 H 1.08994 * 113.47488 * 106.52987 * 14 13 12 35 35 H 1.08999 * 114.16922 * 272.37539 * 15 14 13 36 36 H 0.97003 * 120.00179 * 291.16008 * 16 15 14 37 37 H 1.07999 * 125.92111 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.75037 * 223.43253 * 24 23 22 39 39 H 1.09000 * 109.48359 * 103.11151 * 24 23 22 40 40 H 1.09001 * 109.45110 * 290.24015 * 25 24 23 41 41 H 1.09001 * 109.44864 * 170.31759 * 25 24 23 42 42 H 1.09000 * 109.50904 * 170.59014 * 26 25 24 43 43 H 1.09000 * 109.50994 * 50.45187 * 26 25 24 44 44 H 1.09007 * 109.73145 * 283.91651 * 27 22 21 45 45 H 1.08995 * 109.73342 * 44.59782 * 27 22 21 46 46 H 1.08994 * 113.48196 * 253.46980 * 28 13 12 47 47 H 1.09003 * 113.47819 * 23.94188 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.4686 -6.4434 -1.3753 15 6 2.4122 -7.8815 -0.8411 16 7 1.7254 -8.8242 -1.7276 17 6 2.4246 -9.7899 -2.3561 18 8 3.6255 -9.8790 -2.1869 19 6 1.7335 -10.7387 -3.2477 20 7 0.4421 -10.7500 -3.5142 21 6 0.1784 -11.7472 -4.3596 22 6 1.3360 -12.3824 -4.6345 23 7 2.3182 -11.7516 -3.9432 24 6 3.7293 -12.1430 -3.9603 25 6 3.8407 -13.5681 -4.5135 26 6 3.0627 -13.6710 -5.8286 27 6 1.5594 -13.5704 -5.5355 28 6 1.5115 -7.2624 0.2370 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6170 -4.9209 0.8886 32 1 0.6176 -4.9205 -0.8913 33 1 1.6687 -6.2094 -2.0777 34 1 3.4527 -6.1559 -1.7451 35 1 3.3646 -8.2559 -0.4659 36 1 0.7674 -8.7533 -1.8623 37 1 -0.7936 -12.0019 -4.7555 38 1 4.1326 -12.1114 -2.9481 39 1 4.2888 -11.4586 -4.5980 40 1 3.4266 -14.2714 -3.7909 41 1 4.8890 -13.8071 -4.6924 42 1 3.2774 -14.6278 -6.3046 43 1 3.3600 -12.8588 -6.4920 44 1 1.2194 -14.4787 -5.0379 45 1 1.0112 -13.4336 -6.4676 46 1 1.6845 -7.6690 1.2333 47 1 0.4561 -7.2470 -0.0353 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732117111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:04 Heat of formation + Delta-G solvation = 0.574808 kcal Electronic energy + Delta-G solvation = -29383.811411 eV Core-core repulsion = 25181.449213 eV Total energy + Delta-G solvation = -4202.362198 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.59522 -41.72603 -40.21667 -39.42411 -37.71843 -35.97586 -35.26865 -33.92789 -33.29546 -31.89731 -31.15542 -29.22828 -27.36580 -27.00394 -25.86148 -25.11658 -24.02224 -22.91518 -21.68905 -21.38499 -20.99903 -19.99561 -19.90759 -18.85196 -17.96092 -17.70401 -17.31299 -17.08349 -16.58514 -16.55115 -16.20981 -15.85006 -15.65748 -15.42290 -15.21016 -15.04500 -14.89834 -14.80308 -14.73249 -14.35468 -14.21432 -13.81989 -13.73485 -13.51057 -13.05440 -13.01776 -12.77593 -12.46700 -12.39180 -12.12769 -12.11288 -11.96949 -11.93155 -11.88783 -11.50189 -11.44370 -11.24778 -10.76246 -10.41522 -10.29117 -10.01487 -9.83001 -9.40731 -8.46826 -5.95634 0.23132 1.30170 1.39071 1.40566 1.50680 1.51670 2.05307 2.10458 2.25798 2.29457 2.83247 3.18170 3.19721 3.28065 3.48103 3.49936 3.58787 3.72068 3.74425 3.85010 4.04551 4.13814 4.23142 4.25446 4.26347 4.34960 4.37457 4.49762 4.51777 4.62205 4.65350 4.75618 4.80908 4.83448 4.86286 4.98183 5.08792 5.23664 5.26176 5.27755 5.32135 5.40228 5.60864 5.83327 5.87384 6.04624 6.22353 6.60773 6.73507 6.96241 7.12874 7.56232 8.13287 8.70307 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025483 B = 0.001663 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.519814 B =16834.949348 C =17000.660575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.076 0.924 9 N -0.574 5.574 10 C 0.440 3.560 11 O -0.621 6.621 12 C 0.024 3.976 13 N -0.469 5.469 14 C -0.012 4.012 15 C 0.133 3.867 16 N -0.681 5.681 17 C 0.608 3.392 18 O -0.567 6.567 19 C 0.104 3.896 20 N -0.458 5.458 21 C -0.040 4.040 22 C 0.014 3.986 23 N -0.411 5.411 24 C 0.095 3.905 25 C -0.129 4.129 26 C -0.126 4.126 27 C -0.048 4.048 28 C 0.003 3.997 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.421 0.579 37 H 0.204 0.796 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.109 0.891 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.533 -32.977 -11.976 35.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.094 0.906 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.507 6.507 12 C -0.107 4.107 13 N -0.192 5.192 14 C -0.142 4.142 15 C 0.028 3.972 16 N -0.332 5.332 17 C 0.394 3.606 18 O -0.446 6.446 19 C -0.153 4.153 20 N -0.181 5.181 21 C -0.193 4.193 22 C -0.107 4.107 23 N -0.092 5.092 24 C -0.026 4.026 25 C -0.167 4.167 26 C -0.164 4.164 27 C -0.086 4.086 28 C -0.126 4.126 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.259 0.741 37 H 0.221 0.779 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.081 0.919 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.127 0.873 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.825 -32.016 -10.997 33.862 hybrid contribution -0.534 0.831 -0.677 1.198 sum -1.359 -31.185 -11.674 33.326 Atomic orbital electron populations 1.69662 1.06723 1.29345 1.50268 1.26018 0.96585 1.02311 0.96275 0.85001 0.77787 0.76730 0.78874 1.19868 1.19254 1.19776 1.19611 0.92637 0.84146 1.50128 0.90605 1.41921 1.09288 1.04615 1.65386 1.20819 0.88263 0.86018 0.82183 1.90497 1.16050 1.87943 1.56170 1.22394 0.94128 0.89637 1.04575 1.68732 1.31641 1.01391 1.17426 1.24442 1.02693 0.94728 0.92338 1.22469 0.97995 0.86345 0.90439 1.45469 1.12614 1.29694 1.45456 1.16678 0.85438 0.79799 0.78725 1.90803 1.14758 1.73968 1.65042 1.22212 0.89716 0.97689 1.05714 1.70306 1.11020 1.21464 1.15274 1.22591 0.99700 0.95363 1.01656 1.22093 0.88187 1.00197 1.00248 1.45202 1.09979 1.22169 1.31888 1.22336 0.77057 0.99070 1.04128 1.21977 1.03898 0.92537 0.98284 1.21728 0.93688 1.04429 0.96531 1.20564 0.97888 0.92299 0.97823 1.24348 0.98559 0.88811 1.00869 0.91270 0.76917 0.86586 0.89542 0.89735 0.91699 0.86373 0.74090 0.77943 0.89202 0.89658 0.90354 0.87297 0.87619 0.91898 0.87613 0.86996 0.87259 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.18 13.05 21.66 0.28 -49.90 16 2 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 3 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.34 -19.60 9.68 84.04 0.81 -18.79 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -30.24 5.29 -306.98 -1.62 -31.86 16 10 C 0.44 21.79 7.85 87.66 0.69 22.48 16 11 O -0.62 -36.47 16.01 -3.07 -0.05 -36.52 16 12 C 0.02 0.85 5.30 85.56 0.45 1.30 16 13 N -0.47 -15.56 5.82 -932.48 -5.43 -20.99 16 14 C -0.01 -0.36 7.52 83.58 0.63 0.27 16 15 C 0.13 3.35 4.59 45.45 0.21 3.56 16 16 N -0.68 -15.47 5.38 -444.97 -2.40 -17.87 16 17 C 0.61 16.14 7.81 86.66 0.68 16.82 16 18 O -0.57 -17.77 14.84 -4.05 -0.06 -17.83 16 19 C 0.10 2.50 7.82 136.40 1.07 3.56 16 20 N -0.46 -10.40 10.92 -190.13 -2.08 -12.47 16 21 C -0.04 -0.67 11.82 83.69 0.99 0.32 16 22 C 0.01 0.20 6.57 41.21 0.27 0.47 16 23 N -0.41 -7.91 3.14 -502.15 -1.58 -9.49 16 24 C 0.10 1.45 6.10 86.48 0.53 1.98 16 25 C -0.13 -0.91 5.93 30.74 0.18 -0.73 16 26 C -0.13 -0.58 5.97 30.81 0.18 -0.40 16 27 C -0.05 -0.26 6.31 30.03 0.19 -0.07 16 28 C 0.00 0.07 7.45 83.58 0.62 0.69 16 29 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.40 19.60 7.90 -92.71 -0.73 18.86 16 31 H 0.12 3.43 8.08 -2.39 -0.02 3.41 16 32 H 0.09 2.56 7.30 -2.39 -0.02 2.54 16 33 H 0.08 2.34 7.42 -2.39 -0.02 2.32 16 34 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.12 3.35 7.45 -2.39 -0.02 3.33 16 36 H 0.42 8.09 8.44 -92.71 -0.78 7.31 16 37 H 0.20 2.07 8.06 -2.91 -0.02 2.04 16 38 H 0.09 1.64 7.28 -2.39 -0.02 1.62 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 0.54 8.12 -2.39 -0.02 0.52 16 41 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.06 0.42 8.12 -2.39 -0.02 0.40 16 44 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 45 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.10 1.75 7.90 -2.39 -0.02 1.73 16 Total: -1.00 -80.26 390.05 -3.42 -83.68 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: -0.49 Total: 36.08 kcal Atomic # 6 Polarization: 23.28 SS G_CDS: 7.97 Total: 31.25 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -12.82 Total: -142.57 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -0.11 Total: -54.35 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -80.26 -3.42 -83.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732117111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.252 kcal (2) G-P(sol) polarization free energy of solvation -80.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds