Wall clock time and date at job start Wed Apr 1 2020 04:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42105 * 110.53805 * 2 1 4 4 O 1.42101 * 110.54056 * 223.25394 * 2 1 3 5 5 N 1.65590 * 104.45194 * 111.62706 * 2 1 3 6 6 C 1.46505 * 120.00127 * 65.00103 * 5 2 1 7 7 C 1.53001 * 109.47080 * 164.99918 * 6 5 2 8 8 C 1.50703 * 109.46828 * 180.02562 * 7 6 5 9 9 O 1.21275 * 119.99948 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99777 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99897 * 185.30595 * 10 8 7 12 12 H 1.09003 * 109.47076 * 355.20106 * 11 10 8 13 13 C 1.53005 * 109.47205 * 115.20135 * 11 10 8 14 14 N 1.46496 * 109.46754 * 304.99998 * 13 11 10 15 15 C 1.36940 * 119.99710 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00200 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00112 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00150 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00234 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46945 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47056 * 120.00417 * 19 17 15 22 22 H 1.48495 * 109.47596 * 240.00191 * 19 17 15 23 23 C 1.53004 * 109.47030 * 235.19986 * 11 10 8 24 24 C 1.54264 * 110.03364 * 180.41549 * 23 11 10 25 25 C 1.54887 * 104.19843 * 217.10557 * 24 23 11 26 26 C 1.54892 * 102.74581 * 37.94237 * 25 24 23 27 27 C 1.53874 * 110.02904 * 63.24900 * 23 11 10 28 28 H 1.09003 * 109.46794 * 308.37027 * 1 2 3 29 29 H 1.09000 * 109.47958 * 68.37471 * 1 2 3 30 30 H 1.09004 * 109.47069 * 188.37348 * 1 2 3 31 31 H 0.97007 * 120.00046 * 245.00044 * 5 2 1 32 32 H 1.09002 * 109.46951 * 44.99902 * 6 5 2 33 33 H 1.08994 * 109.46937 * 285.00025 * 6 5 2 34 34 H 1.08994 * 109.47372 * 59.99839 * 7 6 5 35 35 H 1.09002 * 109.47151 * 299.99639 * 7 6 5 36 36 H 0.97000 * 119.99769 * 5.30342 * 10 8 7 37 37 H 1.08993 * 109.46787 * 184.99697 * 13 11 10 38 38 H 1.08996 * 109.47182 * 64.99875 * 13 11 10 39 39 H 0.97006 * 120.00459 * 359.97438 * 14 13 11 40 40 H 0.96999 * 120.00306 * 179.97438 * 18 17 15 41 41 H 1.08999 * 110.01473 * 301.86082 * 23 11 10 42 42 H 1.09001 * 110.48421 * 335.78439 * 24 23 11 43 43 H 1.09001 * 110.48548 * 98.42647 * 24 23 11 44 44 H 1.08996 * 110.75572 * 279.62803 * 25 24 23 45 45 H 1.08998 * 110.91342 * 156.32705 * 25 24 23 46 46 H 1.09000 * 110.48702 * 203.37820 * 26 25 24 47 47 H 1.09002 * 110.60371 * 80.79315 * 26 25 24 48 48 H 1.09005 * 110.02914 * 238.56269 * 27 23 11 49 49 H 1.08993 * 110.03882 * 359.97438 * 27 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4906 6 6 1.8908 -1.9707 1.8506 7 6 2.6877 -2.3831 3.0899 8 6 2.3421 -3.8026 3.4599 9 8 1.5374 -4.4230 2.7978 10 7 2.9265 -4.3822 4.5271 11 6 2.6801 -5.7965 4.8189 12 1 1.9394 -6.1877 4.1215 13 6 3.9846 -6.5825 4.6715 14 7 4.5465 -6.3504 3.3387 15 6 5.7204 -6.9549 2.9758 16 1 6.2322 -7.6025 3.6723 17 6 6.2527 -6.7354 1.7127 18 7 5.6293 -5.9458 0.8639 19 14 7.8544 -7.5595 1.2180 20 1 8.3518 -8.3906 2.3437 21 1 7.6215 -8.4219 0.0316 22 1 8.8629 -6.5216 0.8851 23 6 2.1581 -5.9385 6.2502 24 6 1.9040 -7.4250 6.5750 25 6 0.6282 -7.4092 7.4531 26 6 -0.2246 -6.2951 6.7969 27 6 0.8048 -5.2201 6.3912 28 1 -0.3633 0.6379 0.8057 29 1 -0.3635 0.3787 -0.9553 30 1 -0.3633 -1.0167 0.1497 31 1 2.6921 -0.0237 2.1255 32 1 2.1394 -2.6334 1.0217 33 1 0.8244 -2.0406 2.0645 34 1 2.4392 -1.7205 3.9189 35 1 3.7542 -2.3132 2.8760 36 1 3.5104 -3.8629 5.1018 37 1 3.7845 -7.6460 4.8014 38 1 4.6957 -6.2515 5.4283 39 1 4.0867 -5.7690 2.7129 40 1 6.0014 -5.7921 -0.0185 41 1 2.8782 -5.5197 6.9531 42 1 1.7302 -7.9911 5.6598 43 1 2.7438 -7.8432 7.1298 44 1 0.8720 -7.1525 8.4840 45 1 0.1123 -8.3683 7.4070 46 1 -0.9382 -5.8888 7.5136 47 1 -0.7438 -6.6770 5.9178 48 1 0.8678 -4.4533 7.1634 49 1 0.5200 -4.7699 5.4403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733379534.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:10 Heat of formation + Delta-G solvation = -115.123007 kcal Electronic energy + Delta-G solvation = -29484.876428 eV Core-core repulsion = 25380.648396 eV Total energy + Delta-G solvation = -4104.228031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.88916 -38.19340 -37.16542 -36.03714 -35.75526 -35.14608 -33.51700 -31.44590 -30.29095 -29.66073 -29.35602 -28.58541 -26.20055 -24.05106 -22.95838 -21.35126 -20.50638 -20.18664 -19.76303 -19.32949 -17.77949 -17.14182 -16.89509 -16.45984 -16.10079 -16.03364 -15.50306 -15.35516 -14.96057 -14.62252 -14.44632 -13.94200 -13.65859 -13.40241 -13.36628 -13.29284 -13.15013 -13.07028 -12.55561 -12.31460 -12.16460 -12.09865 -12.01150 -11.74049 -11.56110 -11.41603 -11.21180 -11.11871 -11.07115 -10.98988 -10.88632 -10.79377 -10.64308 -10.50631 -10.29599 -10.00125 -9.68116 -9.58860 -9.47766 -8.84498 -8.57670 -6.87144 -5.70113 -2.99999 0.15915 2.58202 2.98804 3.46315 3.51099 3.52894 3.54573 3.72037 4.09638 4.52363 4.57111 4.66042 4.68941 4.69854 4.78179 4.80953 5.07234 5.10474 5.24323 5.41298 5.44827 5.48155 5.50300 5.54027 5.58908 5.62666 5.68444 5.72385 5.88756 5.89556 5.93732 5.99185 6.03564 6.07200 6.11725 6.29054 6.31442 6.36770 6.49812 6.51366 6.71530 6.85594 6.98903 7.73717 7.84291 8.47411 8.58173 9.58889 10.16914 10.51854 11.51823 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006663 B = 0.003759 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4201.589441 B = 7446.847086 C =11169.500316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.617 3.383 3 O -0.965 6.965 4 O -0.947 6.947 5 N -1.120 6.120 6 C 0.129 3.871 7 C -0.147 4.147 8 C 0.524 3.476 9 O -0.540 6.540 10 N -0.712 5.712 11 C 0.137 3.863 12 H 0.101 0.899 13 C 0.143 3.857 14 N -0.729 5.729 15 C -0.243 4.243 16 H 0.069 0.931 17 C -0.011 4.011 18 N -0.926 5.926 19 Si 0.904 3.096 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.096 4.096 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.117 4.117 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.416 0.584 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.397 0.603 37 H 0.029 0.971 38 H 0.018 0.982 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.057 0.943 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.170 10.400 10.999 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.825 4.825 2 S 2.708 3.292 3 O -0.955 6.955 4 O -0.937 6.937 5 N -0.880 5.880 6 C 0.003 3.997 7 C -0.188 4.188 8 C 0.309 3.691 9 O -0.417 6.417 10 N -0.361 5.361 11 C 0.032 3.968 12 H 0.119 0.881 13 C 0.014 3.986 14 N -0.374 5.374 15 C -0.375 4.375 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.575 5.575 19 Si 0.736 3.264 20 H -0.207 1.207 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.116 4.116 24 C -0.154 4.154 25 C -0.162 4.162 26 C -0.162 4.162 27 C -0.154 4.154 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.250 0.750 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.230 0.770 37 H 0.047 0.953 38 H 0.035 0.965 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.076 0.924 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.106 9.986 9.676 19.808 hybrid contribution 0.729 0.106 0.384 0.831 sum -13.377 10.093 10.060 19.545 Atomic orbital electron populations 1.30545 1.28882 1.11774 1.11251 1.04657 0.77439 0.73738 0.73350 1.93606 1.78051 1.37989 1.85888 1.93674 1.76555 1.61400 1.62047 1.55548 1.74333 1.21454 1.36639 1.21063 0.98779 0.80998 0.98879 1.21755 1.03762 0.94599 0.98726 1.20218 0.80482 0.88275 0.80083 1.90709 1.34359 1.65293 1.51370 1.45752 1.49510 1.11844 1.29034 1.21462 0.98960 0.80840 0.95507 0.88128 1.21036 0.91562 0.96470 0.89552 1.42305 1.26294 1.57525 1.11236 1.19226 0.98556 1.22123 0.97549 0.91311 1.24750 0.99046 1.00315 0.96681 1.69677 1.39877 1.40687 1.07216 0.86163 0.83500 0.78621 0.78139 1.20667 1.21879 1.21920 1.22057 0.96911 0.96193 0.96416 1.22392 0.97423 0.95604 1.00030 1.22490 0.96319 0.98536 0.98840 1.22356 0.97546 0.96242 1.00088 1.22155 0.94321 0.97587 1.01374 0.85486 0.85517 0.85160 0.75003 0.88590 0.91223 0.88812 0.87385 0.76956 0.95331 0.96455 0.77971 0.93464 0.90931 0.90897 0.91402 0.91855 0.91820 0.92269 0.91669 0.92421 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -4.35 10.89 101.05 1.10 -3.25 16 2 S 2.62 27.11 6.10 -107.50 -0.66 26.45 16 3 O -0.97 -12.58 18.08 -57.54 -1.04 -13.62 16 4 O -0.95 -14.82 17.50 -57.54 -1.01 -15.82 16 5 N -1.12 -10.59 5.89 -10.61 -0.06 -10.65 16 6 C 0.13 1.51 5.42 -4.04 -0.02 1.48 16 7 C -0.15 -1.70 5.84 -27.88 -0.16 -1.86 16 8 C 0.52 8.08 7.06 -10.98 -0.08 8.00 16 9 O -0.54 -10.33 15.32 5.56 0.09 -10.24 16 10 N -0.71 -10.09 4.00 -53.80 -0.22 -10.30 16 11 C 0.14 2.14 1.70 -67.93 -0.12 2.02 16 12 H 0.10 1.86 6.91 -51.93 -0.36 1.50 16 13 C 0.14 2.76 5.62 -4.04 -0.02 2.73 16 14 N -0.73 -18.44 5.43 -59.91 -0.33 -18.76 16 15 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 19 Si 0.90 22.79 29.55 -169.99 -5.02 17.76 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 C -0.10 -1.14 2.71 -89.50 -0.24 -1.38 16 24 C -0.12 -1.34 5.34 -25.07 -0.13 -1.47 16 25 C -0.12 -1.20 6.91 -24.74 -0.17 -1.37 16 26 C -0.12 -1.25 6.83 -25.07 -0.17 -1.42 16 27 C -0.12 -1.27 6.23 -25.61 -0.16 -1.43 16 28 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.13 0.67 8.14 -51.92 -0.42 0.24 16 30 H 0.13 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.42 3.08 8.62 -34.46 -0.30 2.78 16 32 H 0.10 1.45 7.65 -51.93 -0.40 1.05 16 33 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.40 4.64 8.83 -40.82 -0.36 4.28 16 37 H 0.03 0.57 7.23 -51.93 -0.38 0.19 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.39 10.49 6.81 -40.82 -0.28 10.22 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.94 7.58 -51.93 -0.39 0.54 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.85 7.33 -51.93 -0.38 0.47 16 LS Contribution 407.33 15.07 6.14 6.14 Total: -1.00 -39.23 407.33 -10.11 -49.34 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -8.30 Total: 13.08 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.42 Total: -5.38 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: 0.12 Total: -67.70 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -1.96 Total: -39.68 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Atomic # 16 Polarization: 27.11 SS G_CDS: -0.66 Total: 26.45 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -39.23 -10.11 -49.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733379534.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.788 kcal (2) G-P(sol) polarization free energy of solvation -39.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds