Wall clock time and date at job start Wed Apr 1 2020 04:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42105 * 110.53805 * 2 1 4 4 O 1.42101 * 110.54056 * 223.25394 * 2 1 3 5 5 N 1.65590 * 104.45194 * 111.62706 * 2 1 3 6 6 C 1.46505 * 120.00127 * 65.00103 * 5 2 1 7 7 C 1.53001 * 109.47080 * 164.99918 * 6 5 2 8 8 C 1.50703 * 109.46828 * 180.02562 * 7 6 5 9 9 O 1.21275 * 119.99948 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99777 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99897 * 185.30595 * 10 8 7 12 12 H 1.09003 * 109.47076 * 355.20106 * 11 10 8 13 13 C 1.53005 * 109.47205 * 115.20135 * 11 10 8 14 14 N 1.46496 * 109.46754 * 304.99998 * 13 11 10 15 15 C 1.36940 * 119.99710 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00200 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00112 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00150 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00234 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46945 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47056 * 120.00417 * 19 17 15 22 22 H 1.48495 * 109.47596 * 240.00191 * 19 17 15 23 23 C 1.53004 * 109.47030 * 235.19986 * 11 10 8 24 24 C 1.54264 * 110.03364 * 180.41549 * 23 11 10 25 25 C 1.54887 * 104.19843 * 217.10557 * 24 23 11 26 26 C 1.54892 * 102.74581 * 37.94237 * 25 24 23 27 27 C 1.53874 * 110.02904 * 63.24900 * 23 11 10 28 28 H 1.09003 * 109.46794 * 308.37027 * 1 2 3 29 29 H 1.09000 * 109.47958 * 68.37471 * 1 2 3 30 30 H 1.09004 * 109.47069 * 188.37348 * 1 2 3 31 31 H 0.97007 * 120.00046 * 245.00044 * 5 2 1 32 32 H 1.09002 * 109.46951 * 44.99902 * 6 5 2 33 33 H 1.08994 * 109.46937 * 285.00025 * 6 5 2 34 34 H 1.08994 * 109.47372 * 59.99839 * 7 6 5 35 35 H 1.09002 * 109.47151 * 299.99639 * 7 6 5 36 36 H 0.97000 * 119.99769 * 5.30342 * 10 8 7 37 37 H 1.08993 * 109.46787 * 184.99697 * 13 11 10 38 38 H 1.08996 * 109.47182 * 64.99875 * 13 11 10 39 39 H 0.97006 * 120.00459 * 359.97438 * 14 13 11 40 40 H 0.96999 * 120.00306 * 179.97438 * 18 17 15 41 41 H 1.08999 * 110.01473 * 301.86082 * 23 11 10 42 42 H 1.09001 * 110.48421 * 335.78439 * 24 23 11 43 43 H 1.09001 * 110.48548 * 98.42647 * 24 23 11 44 44 H 1.08996 * 110.75572 * 279.62803 * 25 24 23 45 45 H 1.08998 * 110.91342 * 156.32705 * 25 24 23 46 46 H 1.09000 * 110.48702 * 203.37820 * 26 25 24 47 47 H 1.09002 * 110.60371 * 80.79315 * 26 25 24 48 48 H 1.09005 * 110.02914 * 238.56269 * 27 23 11 49 49 H 1.08993 * 110.03882 * 359.97438 * 27 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4906 6 6 1.8908 -1.9707 1.8506 7 6 2.6877 -2.3831 3.0899 8 6 2.3421 -3.8026 3.4599 9 8 1.5374 -4.4230 2.7978 10 7 2.9265 -4.3822 4.5271 11 6 2.6801 -5.7965 4.8189 12 1 1.9394 -6.1877 4.1215 13 6 3.9846 -6.5825 4.6715 14 7 4.5465 -6.3504 3.3387 15 6 5.7204 -6.9549 2.9758 16 1 6.2322 -7.6025 3.6723 17 6 6.2527 -6.7354 1.7127 18 7 5.6293 -5.9458 0.8639 19 14 7.8544 -7.5595 1.2180 20 1 8.3518 -8.3906 2.3437 21 1 7.6215 -8.4219 0.0316 22 1 8.8629 -6.5216 0.8851 23 6 2.1581 -5.9385 6.2502 24 6 1.9040 -7.4250 6.5750 25 6 0.6282 -7.4092 7.4531 26 6 -0.2246 -6.2951 6.7969 27 6 0.8048 -5.2201 6.3912 28 1 -0.3633 0.6379 0.8057 29 1 -0.3635 0.3787 -0.9553 30 1 -0.3633 -1.0167 0.1497 31 1 2.6921 -0.0237 2.1255 32 1 2.1394 -2.6334 1.0217 33 1 0.8244 -2.0406 2.0645 34 1 2.4392 -1.7205 3.9189 35 1 3.7542 -2.3132 2.8760 36 1 3.5104 -3.8629 5.1018 37 1 3.7845 -7.6460 4.8014 38 1 4.6957 -6.2515 5.4283 39 1 4.0867 -5.7690 2.7129 40 1 6.0014 -5.7921 -0.0185 41 1 2.8782 -5.5197 6.9531 42 1 1.7302 -7.9911 5.6598 43 1 2.7438 -7.8432 7.1298 44 1 0.8720 -7.1525 8.4840 45 1 0.1123 -8.3683 7.4070 46 1 -0.9382 -5.8888 7.5136 47 1 -0.7438 -6.6770 5.9178 48 1 0.8678 -4.4533 7.1634 49 1 0.5200 -4.7699 5.4403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733379534.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:09 Heat of formation + Delta-G solvation = -147.602275 kcal Electronic energy + Delta-G solvation = -29486.284835 eV Core-core repulsion = 25380.648396 eV Total energy + Delta-G solvation = -4105.636438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.09921 -39.23684 -38.14949 -37.02871 -36.90640 -36.46026 -35.18764 -33.11001 -31.67112 -30.47956 -30.23880 -29.46122 -27.72490 -25.44470 -24.48474 -22.68202 -21.62724 -21.20113 -20.71590 -20.28998 -19.20756 -18.68110 -17.96479 -17.39457 -17.16438 -17.03839 -16.72681 -16.56442 -16.19206 -15.93598 -15.56566 -15.25173 -14.99558 -14.86381 -14.60740 -14.16547 -13.98123 -13.94937 -13.89697 -13.59249 -13.29088 -13.18593 -13.05509 -12.99519 -12.88784 -12.70784 -12.60451 -12.49332 -12.17494 -12.08740 -11.93007 -11.89518 -11.86257 -11.79555 -11.61540 -11.41320 -11.28880 -11.00488 -10.74269 -10.40065 -9.84440 -8.98437 -7.93281 -5.22852 -0.64525 1.45113 1.46447 1.56490 1.70676 1.80031 2.41274 2.55542 2.92668 3.32356 3.40072 3.59517 3.69584 3.77321 3.85389 4.04420 4.07822 4.17217 4.19928 4.22954 4.28411 4.43974 4.54906 4.58980 4.64281 4.65155 4.76933 4.78390 4.86806 4.92784 4.93915 4.96871 4.98843 5.08488 5.12362 5.14728 5.22667 5.31746 5.38544 5.49075 5.53691 5.56189 5.72161 6.16835 6.26585 6.68929 7.33552 7.41283 8.11803 8.33601 9.29308 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006663 B = 0.003759 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4201.589441 B = 7446.847086 C =11169.500316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.620 3.380 3 O -0.995 6.995 4 O -1.012 7.012 5 N -1.112 6.112 6 C 0.131 3.869 7 C -0.140 4.140 8 C 0.515 3.485 9 O -0.584 6.584 10 N -0.704 5.704 11 C 0.149 3.851 12 H 0.066 0.934 13 C 0.140 3.860 14 N -0.743 5.743 15 C -0.242 4.242 16 H 0.077 0.923 17 C -0.076 4.076 18 N -0.967 5.967 19 Si 0.971 3.029 20 H -0.262 1.262 21 H -0.298 1.298 22 H -0.294 1.294 23 C -0.086 4.086 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.125 4.125 27 C -0.111 4.111 28 H 0.158 0.842 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.427 0.573 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.144 0.856 35 H 0.098 0.902 36 H 0.412 0.588 37 H 0.027 0.973 38 H 0.033 0.967 39 H 0.373 0.627 40 H 0.248 0.752 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.049 0.951 48 H 0.080 0.920 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.099 11.251 14.059 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.717 3.283 3 O -0.986 6.986 4 O -1.002 7.002 5 N -0.872 5.872 6 C 0.004 3.996 7 C -0.181 4.181 8 C 0.302 3.698 9 O -0.464 6.464 10 N -0.354 5.354 11 C 0.044 3.956 12 H 0.084 0.916 13 C 0.013 3.987 14 N -0.386 5.386 15 C -0.374 4.374 16 H 0.095 0.905 17 C -0.268 4.268 18 N -0.618 5.618 19 Si 0.800 3.200 20 H -0.187 1.187 21 H -0.225 1.225 22 H -0.221 1.221 23 C -0.106 4.106 24 C -0.159 4.159 25 C -0.154 4.154 26 C -0.163 4.163 27 C -0.149 4.149 28 H 0.176 0.824 29 H 0.164 0.836 30 H 0.158 0.842 31 H 0.263 0.737 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.162 0.838 35 H 0.116 0.884 36 H 0.248 0.752 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.205 0.795 40 H 0.057 0.943 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.068 0.932 48 H 0.098 0.902 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.964 10.838 12.822 22.489 hybrid contribution 0.923 -0.191 -0.505 1.069 sum -14.041 10.647 12.316 21.499 Atomic orbital electron populations 1.30292 1.22793 1.13404 1.13742 1.04239 0.79433 0.72106 0.72528 1.93559 1.80068 1.38823 1.86130 1.93601 1.79420 1.62943 1.64230 1.55234 1.75089 1.20633 1.36281 1.20935 1.00236 0.81088 0.97320 1.21774 1.02958 0.92979 1.00376 1.20920 0.79773 0.89604 0.79515 1.90686 1.36467 1.66646 1.52650 1.45687 1.49410 1.11303 1.29021 1.21211 0.96012 0.81059 0.97347 0.91551 1.21247 0.93400 0.97111 0.86943 1.42542 1.25763 1.57065 1.13220 1.19663 0.99075 1.21156 0.97525 0.90462 1.25570 1.02610 1.01639 0.97000 1.69862 1.41718 1.42901 1.07310 0.85106 0.79505 0.77528 0.77811 1.18655 1.22543 1.22104 1.22014 0.97960 0.96926 0.93721 1.22422 0.98914 0.94984 0.99628 1.22467 0.95006 0.98764 0.99192 1.22365 0.97700 0.96153 1.00051 1.22103 0.93587 0.98132 1.01051 0.82362 0.83613 0.84202 0.73699 0.93039 0.88776 0.83802 0.88417 0.75234 0.95482 0.94947 0.79494 0.94315 0.89004 0.93164 0.90707 0.90045 0.91294 0.90326 0.93162 0.90173 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -6.69 10.89 113.37 1.23 -5.45 16 2 S 2.62 54.74 6.10 -56.49 -0.34 54.40 16 3 O -1.00 -26.02 18.08 -127.65 -2.31 -28.33 16 4 O -1.01 -33.87 17.50 -127.65 -2.23 -36.10 16 5 N -1.11 -20.57 5.89 -187.48 -1.10 -21.67 16 6 C 0.13 3.08 5.42 86.38 0.47 3.55 16 7 C -0.14 -3.14 5.84 29.85 0.17 -2.97 16 8 C 0.51 16.08 7.06 87.66 0.62 16.70 16 9 O -0.58 -23.39 15.32 -3.01 -0.05 -23.43 16 10 N -0.70 -19.67 4.00 -442.52 -1.77 -21.44 16 11 C 0.15 4.66 1.70 44.99 0.08 4.73 16 12 H 0.07 2.57 6.91 -2.39 -0.02 2.56 16 13 C 0.14 5.41 5.62 86.38 0.49 5.90 16 14 N -0.74 -38.33 5.43 -343.46 -1.87 -40.19 16 15 C -0.24 -13.74 9.99 84.03 0.84 -12.90 16 16 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 17 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 18 N -0.97 -62.03 13.06 21.65 0.28 -61.75 16 19 Si 0.97 47.55 29.55 68.60 2.03 49.58 16 20 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 22 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 23 C -0.09 -1.91 2.71 -10.07 -0.03 -1.93 16 24 C -0.12 -2.62 5.34 31.67 0.17 -2.45 16 25 C -0.12 -1.98 6.91 31.89 0.22 -1.76 16 26 C -0.13 -2.25 6.83 31.67 0.22 -2.03 16 27 C -0.11 -2.18 6.23 31.32 0.20 -1.98 16 28 H 0.16 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.43 5.84 8.62 -96.74 -0.83 5.01 16 32 H 0.05 1.68 7.65 -2.39 -0.02 1.66 16 33 H 0.09 1.73 8.10 -2.39 -0.02 1.72 16 34 H 0.14 1.74 8.14 -2.39 -0.02 1.73 16 35 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.41 8.96 8.83 -92.71 -0.82 8.14 16 37 H 0.03 1.07 7.23 -2.39 -0.02 1.05 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.37 21.07 6.81 -92.70 -0.63 20.44 16 40 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.05 1.30 7.58 -2.39 -0.02 1.29 16 43 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 49 H 0.05 1.14 7.33 -2.39 -0.02 1.12 16 Total: -1.00 -89.75 407.33 -3.54 -93.29 By element: Atomic # 1 Polarization: 41.59 SS G_CDS: -1.32 Total: 40.27 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.14 Total: -4.62 kcal Atomic # 7 Polarization: -140.59 SS G_CDS: -4.46 Total: -145.05 kcal Atomic # 8 Polarization: -83.28 SS G_CDS: -4.59 Total: -87.87 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Atomic # 16 Polarization: 54.74 SS G_CDS: -0.34 Total: 54.40 kcal Total: -89.75 -3.54 -93.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733379534.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.312 kcal (2) G-P(sol) polarization free energy of solvation -89.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds