Wall clock time and date at job start Wed Apr 1 2020 04:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00313 * 2 1 4 4 H 1.48496 * 109.47408 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47141 * 300.00163 * 3 2 1 6 6 H 1.48497 * 109.47336 * 59.99682 * 3 2 1 7 7 C 1.38811 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99808 * 179.72234 * 7 2 1 9 9 N 1.36930 * 120.00406 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00560 * 179.72453 * 9 7 2 11 11 H 1.09005 * 109.46598 * 34.99562 * 10 9 7 12 12 C 1.52999 * 109.47246 * 154.99896 * 10 9 7 13 13 N 1.46501 * 109.47092 * 305.00341 * 12 10 9 14 14 C 1.34773 * 119.99671 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00152 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99887 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.50616 * 33.40068 * 16 14 13 18 18 C 1.53096 * 109.50614 * 273.27007 * 16 14 13 19 19 O 1.43019 * 109.25667 * 183.21922 * 18 16 14 20 20 C 1.43011 * 113.74207 * 58.67185 * 19 18 16 21 21 C 1.53102 * 109.25527 * 301.33060 * 20 19 18 22 22 N 1.47011 * 109.50526 * 153.48778 * 16 14 13 23 23 C 1.46900 * 111.00232 * 302.32708 * 22 16 14 24 24 C 1.53004 * 109.47409 * 163.37249 * 23 22 16 25 25 F 1.39903 * 109.46505 * 305.65295 * 24 23 22 26 26 F 1.39897 * 109.47265 * 65.65100 * 24 23 22 27 27 C 1.53003 * 109.46986 * 275.00176 * 10 9 7 28 28 C 1.53001 * 117.49500 * 128.74291 * 27 10 9 29 29 C 1.52998 * 117.49876 * 60.08406 * 27 10 9 30 30 H 0.97001 * 119.99670 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99875 * 359.72538 * 9 7 2 32 32 H 1.08996 * 109.46906 * 65.00338 * 12 10 9 33 33 H 1.09001 * 109.46677 * 184.99843 * 12 10 9 34 34 H 0.96996 * 120.00103 * 359.97438 * 13 12 10 35 35 H 1.09003 * 109.50825 * 303.15254 * 18 16 14 36 36 H 1.08997 * 109.50902 * 63.28406 * 18 16 14 37 37 H 1.08998 * 109.50461 * 181.39791 * 20 19 18 38 38 H 1.08993 * 109.50804 * 61.26235 * 20 19 18 39 39 H 1.09005 * 109.50236 * 296.91515 * 21 20 19 40 40 H 1.08995 * 109.54257 * 176.81096 * 21 20 19 41 41 H 1.09001 * 109.47154 * 283.37070 * 23 22 16 42 42 H 1.08998 * 109.46927 * 43.36940 * 23 22 16 43 43 H 1.08995 * 109.46915 * 185.65347 * 24 23 22 44 44 H 1.08997 * 115.54803 * 274.41513 * 27 10 9 45 45 H 1.08991 * 117.50179 * 359.97438 * 28 27 10 46 46 H 1.09003 * 117.49550 * 145.02398 * 28 27 10 47 47 H 1.08995 * 117.50014 * 214.97983 * 29 27 10 48 48 H 1.09007 * 117.49714 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 -0.0040 9 7 1.3255 -2.3880 0.0016 10 6 2.0579 -3.6569 -0.0039 11 1 2.9714 -3.5516 0.5815 12 6 1.1835 -4.7532 0.6078 13 7 0.7429 -4.3388 1.9421 14 6 -0.0428 -5.1523 2.6751 15 8 -0.3855 -6.2271 2.2300 16 6 -0.4955 -4.7262 4.0480 17 1 -0.6357 -3.6454 4.0659 18 6 0.5625 -5.1226 5.0811 19 8 0.0945 -4.7837 6.3893 20 6 -1.1398 -5.4147 6.7407 21 6 -2.2151 -5.0213 5.7243 22 7 -1.7652 -5.3915 4.3745 23 6 -2.7945 -5.0820 3.3732 24 6 -3.9431 -6.0854 3.4954 25 9 -3.4367 -7.3866 3.4081 26 9 -4.5817 -5.9153 4.7285 27 6 2.4153 -4.0332 -1.4433 28 6 3.8742 -4.3863 -1.7396 29 6 3.2926 -3.0584 -2.2313 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 0.0060 32 1 0.3131 -4.9200 -0.0267 33 1 1.7587 -5.6758 0.6852 34 1 1.0173 -3.4793 2.2983 35 1 0.7414 -6.1964 5.0253 36 1 1.4897 -4.5874 4.8762 37 1 -1.4438 -5.0907 7.7360 38 1 -1.0105 -6.4969 6.7331 39 1 -2.3826 -3.9452 5.7698 40 1 -3.1433 -5.5441 5.9548 41 1 -3.1734 -4.0739 3.5412 42 1 -2.3611 -5.1456 2.3751 43 1 -4.6582 -5.9189 2.6899 44 1 1.6448 -4.5740 -1.9928 45 1 4.5794 -4.3501 -0.9094 46 1 4.0636 -5.1591 -2.4846 47 1 3.0996 -2.9582 -3.2993 48 1 3.6149 -2.1488 -1.7244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752472432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:21 Heat of formation + Delta-G solvation = -130.009938 kcal Electronic energy + Delta-G solvation = -32332.962850 eV Core-core repulsion = 27674.248886 eV Total energy + Delta-G solvation = -4658.713964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.96810 -46.91405 -40.48427 -38.71172 -37.55861 -35.93621 -34.67529 -33.47251 -31.87528 -30.83650 -30.47237 -28.13783 -26.39096 -25.03615 -23.68653 -22.54365 -22.47824 -21.75363 -20.99658 -20.15121 -19.50998 -18.00356 -17.50279 -17.34987 -16.84904 -16.83047 -16.36093 -16.12406 -15.61773 -15.21812 -14.98310 -14.91080 -14.50219 -14.43023 -14.11166 -14.05428 -13.88427 -13.66755 -13.29135 -13.24424 -13.17732 -12.73631 -12.59025 -12.38740 -12.02243 -11.87481 -11.60750 -11.43303 -11.28897 -11.18572 -10.94386 -10.92059 -10.78378 -10.62772 -10.15972 -10.01405 -9.96139 -9.68429 -9.46113 -9.34497 -9.06459 -8.74669 -8.63100 -7.13443 -5.90480 -3.19834 2.70171 3.10510 3.33740 3.40357 3.42468 3.44567 3.75105 3.83813 4.15732 4.34927 4.42811 4.52910 4.68395 4.77215 4.79383 4.87421 4.93337 5.10070 5.12097 5.15499 5.33777 5.39950 5.43251 5.45279 5.50324 5.51978 5.54106 5.65864 5.68017 5.75176 5.82519 5.93053 5.99989 6.11505 6.31734 6.47178 6.48534 6.52878 6.63004 6.70563 6.80418 6.90601 6.91543 7.58223 7.80871 8.26547 8.43830 9.39227 9.92527 10.28577 11.31498 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010844 B = 0.003111 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.513494 B = 8999.499364 C = 9730.541782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.903 3.097 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.193 3.807 11 H 0.056 0.944 12 C 0.120 3.880 13 N -0.710 5.710 14 C 0.513 3.487 15 O -0.526 6.526 16 C 0.031 3.969 17 H 0.076 0.924 18 C 0.080 3.920 19 O -0.379 6.379 20 C 0.063 3.937 21 C 0.001 3.999 22 N -0.507 5.507 23 C -0.002 4.002 24 C 0.274 3.726 25 F -0.189 7.189 26 F -0.209 7.209 27 C -0.159 4.159 28 C -0.196 4.196 29 C -0.156 4.156 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.411 0.589 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.108 0.892 41 H 0.068 0.932 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 -11.067 8.645 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.074 0.926 12 C -0.004 4.004 13 N -0.363 5.363 14 C 0.297 3.703 15 O -0.402 6.402 16 C -0.081 4.081 17 H 0.094 0.906 18 C 0.002 3.998 19 O -0.297 6.297 20 C -0.014 4.014 21 C -0.127 4.127 22 N -0.233 5.233 23 C -0.130 4.130 24 C 0.220 3.780 25 F -0.170 7.170 26 F -0.191 7.191 27 C -0.181 4.181 28 C -0.234 4.234 29 C -0.193 4.193 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.247 0.753 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.425 -12.090 8.481 15.160 hybrid contribution -0.131 2.140 -0.278 2.162 sum -3.556 -9.949 8.204 13.377 Atomic orbital electron populations 1.69661 1.05097 1.25624 1.57385 1.24708 0.95431 0.97596 1.02765 0.86194 0.78874 0.84329 0.77227 1.20527 1.21901 1.21896 1.19206 0.90889 0.83799 1.42913 0.91035 1.42453 1.05768 0.99440 1.88101 1.20065 0.94382 0.86062 0.91272 0.92627 1.21607 0.98684 0.97646 0.82492 1.46041 1.50752 1.21831 1.17667 1.20059 0.79248 0.84894 0.86132 1.90722 1.55625 1.21973 1.71875 1.22339 0.92413 0.98595 0.94747 0.90593 1.22529 0.95009 1.01391 0.80867 1.88021 1.39099 1.70634 1.31900 1.22705 0.83242 0.97896 0.97565 1.23287 1.00611 1.00377 0.88403 1.61903 1.01691 1.57933 1.01732 1.23342 0.92901 0.97295 0.99511 1.21871 0.92098 0.80493 0.83564 1.93026 1.88689 1.39103 1.96232 1.92864 1.83271 1.95459 1.47466 1.23019 0.92253 1.03136 0.99715 1.22963 0.97198 0.99815 1.03381 1.22783 1.03366 0.94039 0.99122 0.93531 0.78149 0.91800 0.91497 0.75297 0.91386 0.87569 0.88126 0.91966 0.93416 0.87378 0.91362 0.86945 0.86976 0.89163 0.89519 0.90063 0.90219 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.89 13.06 55.49 0.72 -25.16 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.24 -5.79 8.63 -15.06 -0.13 -5.92 16 8 H 0.07 1.72 6.91 -52.49 -0.36 1.36 16 9 N -0.72 -15.47 4.54 -53.42 -0.24 -15.71 16 10 C 0.19 3.35 2.70 -67.93 -0.18 3.16 16 11 H 0.06 0.98 7.84 -51.93 -0.41 0.58 16 12 C 0.12 1.89 5.22 -4.04 -0.02 1.86 16 13 N -0.71 -10.71 5.39 -60.29 -0.32 -11.03 16 14 C 0.51 7.79 5.78 -10.99 -0.06 7.73 16 15 O -0.53 -9.50 15.50 5.56 0.09 -9.41 16 16 C 0.03 0.41 2.38 -68.75 -0.16 0.25 16 17 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 18 C 0.08 0.97 6.27 37.21 0.23 1.20 16 19 O -0.38 -4.72 10.83 -35.23 -0.38 -5.10 16 20 C 0.06 0.65 7.01 37.21 0.26 0.92 16 21 C 0.00 0.01 5.33 -3.71 -0.02 -0.01 16 22 N -0.51 -6.58 4.05 -227.72 -0.92 -7.51 16 23 C 0.00 -0.02 5.00 -3.82 -0.02 -0.04 16 24 C 0.27 3.01 5.56 37.16 0.21 3.22 16 25 F -0.19 -2.68 17.16 2.25 0.04 -2.64 16 26 F -0.21 -2.34 14.51 2.25 0.03 -2.31 16 27 C -0.16 -2.64 5.36 -90.62 -0.49 -3.12 16 28 C -0.20 -2.84 10.18 -26.69 -0.27 -3.11 16 29 C -0.16 -2.65 9.78 -26.69 -0.26 -2.92 16 30 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.38 9.10 7.80 -40.82 -0.32 8.79 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.41 6.31 8.14 -40.82 -0.33 5.98 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.11 1.15 5.43 -51.93 -0.28 0.87 16 41 H 0.07 0.74 8.04 -51.93 -0.42 0.33 16 42 H 0.11 1.56 5.91 -51.93 -0.31 1.25 16 43 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 45 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.10 2.01 6.23 -51.92 -0.32 1.68 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -29.65 390.92 -8.51 -38.16 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -7.37 Total: 15.99 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.01 Total: 2.90 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.76 Total: -59.41 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.30 Total: -14.51 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.07 Total: -4.95 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.65 -8.51 -38.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752472432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.852 kcal (2) G-P(sol) polarization free energy of solvation -29.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds