Wall clock time and date at job start Wed Apr 1 2020 04:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00313 * 2 1 4 4 H 1.48496 * 109.47408 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47141 * 300.00163 * 3 2 1 6 6 H 1.48497 * 109.47336 * 59.99682 * 3 2 1 7 7 C 1.38811 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99808 * 179.72234 * 7 2 1 9 9 N 1.36930 * 120.00406 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00560 * 179.72453 * 9 7 2 11 11 H 1.09005 * 109.46598 * 34.99562 * 10 9 7 12 12 C 1.52999 * 109.47246 * 154.99896 * 10 9 7 13 13 N 1.46501 * 109.47092 * 305.00341 * 12 10 9 14 14 C 1.34773 * 119.99671 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00152 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99887 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.50616 * 33.40068 * 16 14 13 18 18 C 1.53096 * 109.50614 * 273.27007 * 16 14 13 19 19 O 1.43019 * 109.25667 * 183.21922 * 18 16 14 20 20 C 1.43011 * 113.74207 * 58.67185 * 19 18 16 21 21 C 1.53102 * 109.25527 * 301.33060 * 20 19 18 22 22 N 1.47011 * 109.50526 * 153.48778 * 16 14 13 23 23 C 1.46900 * 111.00232 * 302.32708 * 22 16 14 24 24 C 1.53004 * 109.47409 * 163.37249 * 23 22 16 25 25 F 1.39903 * 109.46505 * 305.65295 * 24 23 22 26 26 F 1.39897 * 109.47265 * 65.65100 * 24 23 22 27 27 C 1.53003 * 109.46986 * 275.00176 * 10 9 7 28 28 C 1.53001 * 117.49500 * 128.74291 * 27 10 9 29 29 C 1.52998 * 117.49876 * 60.08406 * 27 10 9 30 30 H 0.97001 * 119.99670 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99875 * 359.72538 * 9 7 2 32 32 H 1.08996 * 109.46906 * 65.00338 * 12 10 9 33 33 H 1.09001 * 109.46677 * 184.99843 * 12 10 9 34 34 H 0.96996 * 120.00103 * 359.97438 * 13 12 10 35 35 H 1.09003 * 109.50825 * 303.15254 * 18 16 14 36 36 H 1.08997 * 109.50902 * 63.28406 * 18 16 14 37 37 H 1.08998 * 109.50461 * 181.39791 * 20 19 18 38 38 H 1.08993 * 109.50804 * 61.26235 * 20 19 18 39 39 H 1.09005 * 109.50236 * 296.91515 * 21 20 19 40 40 H 1.08995 * 109.54257 * 176.81096 * 21 20 19 41 41 H 1.09001 * 109.47154 * 283.37070 * 23 22 16 42 42 H 1.08998 * 109.46927 * 43.36940 * 23 22 16 43 43 H 1.08995 * 109.46915 * 185.65347 * 24 23 22 44 44 H 1.08997 * 115.54803 * 274.41513 * 27 10 9 45 45 H 1.08991 * 117.50179 * 359.97438 * 28 27 10 46 46 H 1.09003 * 117.49550 * 145.02398 * 28 27 10 47 47 H 1.08995 * 117.50014 * 214.97983 * 29 27 10 48 48 H 1.09007 * 117.49714 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 -0.0040 9 7 1.3255 -2.3880 0.0016 10 6 2.0579 -3.6569 -0.0039 11 1 2.9714 -3.5516 0.5815 12 6 1.1835 -4.7532 0.6078 13 7 0.7429 -4.3388 1.9421 14 6 -0.0428 -5.1523 2.6751 15 8 -0.3855 -6.2271 2.2300 16 6 -0.4955 -4.7262 4.0480 17 1 -0.6357 -3.6454 4.0659 18 6 0.5625 -5.1226 5.0811 19 8 0.0945 -4.7837 6.3893 20 6 -1.1398 -5.4147 6.7407 21 6 -2.2151 -5.0213 5.7243 22 7 -1.7652 -5.3915 4.3745 23 6 -2.7945 -5.0820 3.3732 24 6 -3.9431 -6.0854 3.4954 25 9 -3.4367 -7.3866 3.4081 26 9 -4.5817 -5.9153 4.7285 27 6 2.4153 -4.0332 -1.4433 28 6 3.8742 -4.3863 -1.7396 29 6 3.2926 -3.0584 -2.2313 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 0.0060 32 1 0.3131 -4.9200 -0.0267 33 1 1.7587 -5.6758 0.6852 34 1 1.0173 -3.4793 2.2983 35 1 0.7414 -6.1964 5.0253 36 1 1.4897 -4.5874 4.8762 37 1 -1.4438 -5.0907 7.7360 38 1 -1.0105 -6.4969 6.7331 39 1 -2.3826 -3.9452 5.7698 40 1 -3.1433 -5.5441 5.9548 41 1 -3.1734 -4.0739 3.5412 42 1 -2.3611 -5.1456 2.3751 43 1 -4.6582 -5.9189 2.6899 44 1 1.6448 -4.5740 -1.9928 45 1 4.5794 -4.3501 -0.9094 46 1 4.0636 -5.1591 -2.4846 47 1 3.0996 -2.9582 -3.2993 48 1 3.6149 -2.1488 -1.7244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752472432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:20 Heat of formation + Delta-G solvation = -150.842348 kcal Electronic energy + Delta-G solvation = -32333.866211 eV Core-core repulsion = 27674.248886 eV Total energy + Delta-G solvation = -4659.617325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.89158 -47.87079 -41.58583 -39.86625 -38.91276 -36.92488 -36.04399 -35.14580 -33.10646 -32.29128 -31.42388 -29.65757 -27.34899 -26.19663 -25.32823 -23.86158 -23.41906 -23.01279 -22.09101 -21.40666 -20.80657 -19.34529 -18.81016 -18.41178 -18.01224 -17.80332 -17.37604 -17.15681 -16.81574 -16.65803 -16.13732 -16.00487 -15.93388 -15.62345 -15.31872 -15.28085 -14.96256 -14.87541 -14.81908 -14.52380 -14.22865 -13.83634 -13.80328 -13.35918 -13.30157 -12.98900 -12.87613 -12.80592 -12.69731 -12.51757 -12.38795 -12.25463 -12.14932 -11.95145 -11.72445 -11.52993 -11.09992 -10.99997 -10.88590 -10.77561 -10.59054 -10.03207 -9.61636 -8.98879 -7.89180 -5.15632 1.48282 1.49428 1.51774 1.58247 1.99264 2.44287 2.58017 2.84756 2.92232 3.09084 3.30762 3.48181 3.51169 3.68907 3.71931 3.80665 3.87354 3.91361 4.00773 4.02280 4.17901 4.21382 4.21897 4.37214 4.40927 4.41490 4.48877 4.57620 4.59079 4.62871 4.68561 4.80072 4.87452 4.88520 4.91758 5.16644 5.17482 5.41701 5.45621 5.49310 5.53696 5.63450 5.70536 5.99803 6.31345 6.55393 7.19719 7.40293 8.10978 8.36314 9.33838 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010844 B = 0.003111 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.513494 B = 8999.499364 C = 9730.541782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.067 4.067 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.303 1.303 6 H -0.299 1.299 7 C -0.215 4.215 8 H 0.077 0.923 9 N -0.722 5.722 10 C 0.197 3.803 11 H 0.059 0.941 12 C 0.130 3.870 13 N -0.707 5.707 14 C 0.518 3.482 15 O -0.555 6.555 16 C 0.036 3.964 17 H 0.075 0.925 18 C 0.083 3.917 19 O -0.388 6.388 20 C 0.060 3.940 21 C 0.003 3.997 22 N -0.521 5.521 23 C -0.003 4.003 24 C 0.273 3.727 25 F -0.209 7.209 26 F -0.209 7.209 27 C -0.172 4.172 28 C -0.163 4.163 29 C -0.175 4.175 30 H 0.246 0.754 31 H 0.373 0.627 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.410 0.590 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.149 0.851 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.105 0.895 47 H 0.084 0.916 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 -11.874 9.177 15.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.260 4.260 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.231 1.231 6 H -0.226 1.226 7 C -0.346 4.346 8 H 0.095 0.905 9 N -0.361 5.361 10 C 0.088 3.912 11 H 0.077 0.923 12 C 0.006 3.994 13 N -0.359 5.359 14 C 0.304 3.696 15 O -0.433 6.433 16 C -0.076 4.076 17 H 0.093 0.907 18 C 0.006 3.994 19 O -0.306 6.306 20 C -0.016 4.016 21 C -0.124 4.124 22 N -0.247 5.247 23 C -0.132 4.132 24 C 0.219 3.781 25 F -0.191 7.191 26 F -0.191 7.191 27 C -0.194 4.194 28 C -0.200 4.200 29 C -0.212 4.212 30 H 0.056 0.944 31 H 0.205 0.795 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.247 0.753 35 H 0.080 0.920 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.131 0.869 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.166 0.834 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.123 0.877 47 H 0.103 0.897 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.497 -12.926 9.021 15.959 hybrid contribution -0.372 2.300 -0.449 2.373 sum -2.869 -10.626 8.572 13.950 Atomic orbital electron populations 1.69790 1.06315 1.25435 1.60189 1.25289 0.96004 1.00183 1.04515 0.85333 0.78551 0.81304 0.76151 1.19156 1.23120 1.22621 1.19477 0.91137 0.84582 1.39451 0.90533 1.42548 1.05294 1.00320 1.87982 1.20159 0.94184 0.84698 0.92147 0.92330 1.21469 0.98038 0.97434 0.82487 1.46010 1.50718 1.21740 1.17443 1.20333 0.78439 0.84247 0.86620 1.90706 1.56658 1.23249 1.72663 1.22289 0.93143 0.98412 0.93724 0.90730 1.22526 0.95085 1.01183 0.80655 1.88012 1.39947 1.70969 1.31704 1.22891 0.82321 0.97877 0.98558 1.23323 1.01030 1.00492 0.87538 1.61954 1.01798 1.58258 1.02732 1.23351 0.93124 0.98387 0.98371 1.22171 0.92386 0.79042 0.84504 1.92983 1.89104 1.40602 1.96362 1.92857 1.83114 1.95355 1.47728 1.22930 0.93954 1.03789 0.98690 1.23031 0.95222 0.98263 1.03498 1.22732 1.04899 0.94297 0.99273 0.94450 0.79490 0.92922 0.90139 0.75339 0.91955 0.86373 0.85563 0.92062 0.93285 0.86864 0.90222 0.88882 0.83361 0.88852 0.88554 0.87653 0.89713 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -54.71 13.06 21.65 0.28 -54.43 16 2 C -0.07 -3.54 5.50 84.86 0.47 -3.07 16 3 Si 0.96 43.36 29.55 68.60 2.03 45.39 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.21 -10.38 8.63 84.03 0.73 -9.66 16 8 H 0.08 3.60 6.91 -2.91 -0.02 3.58 16 9 N -0.72 -30.99 4.54 -322.92 -1.47 -32.46 16 10 C 0.20 6.61 2.70 44.99 0.12 6.74 16 11 H 0.06 1.96 7.84 -2.38 -0.02 1.94 16 12 C 0.13 3.97 5.22 86.38 0.45 4.42 16 13 N -0.71 -20.99 5.39 -463.06 -2.49 -23.49 16 14 C 0.52 15.60 5.78 87.66 0.51 16.11 16 15 O -0.55 -19.99 15.50 -3.03 -0.05 -20.03 16 16 C 0.04 0.94 2.38 44.18 0.11 1.05 16 17 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 18 C 0.08 1.95 6.27 72.01 0.45 2.40 16 19 O -0.39 -9.13 10.83 -148.98 -1.61 -10.74 16 20 C 0.06 1.15 7.01 72.02 0.50 1.66 16 21 C 0.00 0.07 5.33 86.32 0.46 0.53 16 22 N -0.52 -13.21 4.05 -874.38 -3.54 -16.75 16 23 C 0.00 -0.08 5.00 86.30 0.43 0.35 16 24 C 0.27 5.69 5.56 71.98 0.40 6.09 16 25 F -0.21 -5.81 17.16 44.97 0.77 -5.04 16 26 F -0.21 -4.38 14.51 44.97 0.65 -3.73 16 27 C -0.17 -5.41 5.36 -10.79 -0.06 -5.47 16 28 C -0.16 -4.22 10.18 30.62 0.31 -3.91 16 29 C -0.17 -5.69 9.78 30.62 0.30 -5.39 16 30 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 31 H 0.37 17.84 7.80 -92.71 -0.72 17.11 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.41 12.43 8.14 -92.71 -0.75 11.68 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 36 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.11 2.25 5.43 -2.39 -0.01 2.24 16 41 H 0.08 1.68 8.04 -2.39 -0.02 1.66 16 42 H 0.09 2.59 5.91 -2.39 -0.01 2.58 16 43 H 0.15 2.02 8.14 -2.39 -0.02 2.01 16 44 H 0.09 2.89 8.11 -2.39 -0.02 2.87 16 45 H 0.10 2.35 8.05 -2.39 -0.02 2.33 16 46 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 48 H 0.08 3.03 6.23 -2.38 -0.01 3.01 16 Total: -1.00 -63.24 390.92 -0.73 -63.97 By element: Atomic # 1 Polarization: 45.95 SS G_CDS: -0.48 Total: 45.47 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 5.18 Total: 11.85 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -7.22 Total: -127.12 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.66 Total: -30.78 kcal Atomic # 9 Polarization: -10.20 SS G_CDS: 1.42 Total: -8.77 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -63.24 -0.73 -63.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752472432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.872 kcal (2) G-P(sol) polarization free energy of solvation -63.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds