Wall clock time and date at job start Wed Apr 1 2020 04:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 S 1.65605 * 119.99749 * 2 1 4 4 O 1.42098 * 104.27634 * 181.34781 * 3 2 1 5 5 O 1.42099 * 104.27671 * 309.20621 * 3 2 1 6 6 C 1.81402 * 104.44618 * 65.27751 * 3 2 1 7 7 C 1.53009 * 109.46948 * 179.97438 * 6 3 2 8 8 C 1.50693 * 109.47183 * 180.02562 * 7 6 3 9 9 O 1.21285 * 120.00278 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00427 * 180.02562 * 8 7 6 11 11 C 1.46929 * 120.62707 * 359.71564 * 10 8 7 12 12 C 1.53618 * 108.54182 * 126.36917 * 11 10 8 13 13 C 1.53045 * 109.24104 * 54.85908 * 12 11 10 14 14 C 1.53038 * 109.53632 * 298.51097 * 13 12 11 15 15 H 1.09002 * 109.49834 * 301.40918 * 14 13 12 16 16 C 1.53003 * 109.52137 * 181.33143 * 14 13 12 17 17 N 1.46503 * 109.47298 * 65.14533 * 16 14 13 18 18 C 1.46499 * 120.00109 * 89.99565 * 17 16 14 19 19 C 1.36937 * 120.00112 * 270.00351 * 17 16 14 20 20 H 1.08003 * 119.99932 * 22.10854 * 19 17 16 21 21 C 1.38810 * 120.00113 * 202.11374 * 19 17 16 22 22 N 1.31622 * 120.00023 * 14.13409 * 21 19 17 23 23 Si 1.86797 * 120.00285 * 194.13012 * 21 19 17 24 24 H 1.48498 * 109.46792 * 89.99866 * 23 21 19 25 25 H 1.48496 * 109.47302 * 210.00051 * 23 21 19 26 26 H 1.48499 * 109.46995 * 330.00453 * 23 21 19 27 27 C 1.46927 * 120.63453 * 180.02562 * 10 8 7 28 28 H 1.08994 * 109.47327 * 59.72186 * 1 2 3 29 29 H 1.09008 * 109.46833 * 179.72565 * 1 2 3 30 30 H 1.08998 * 109.47456 * 299.71870 * 1 2 3 31 31 H 0.96996 * 120.00732 * 180.28261 * 2 1 3 32 32 H 1.08993 * 109.47188 * 299.99790 * 6 3 2 33 33 H 1.08994 * 109.46977 * 60.00495 * 6 3 2 34 34 H 1.08995 * 109.46794 * 300.00405 * 7 6 3 35 35 H 1.08999 * 109.46572 * 60.00050 * 7 6 3 36 36 H 1.08997 * 109.58750 * 246.20619 * 11 10 8 37 37 H 1.09006 * 109.58717 * 6.63046 * 11 10 8 38 38 H 1.08999 * 109.63816 * 294.86696 * 12 11 10 39 39 H 1.09007 * 109.46245 * 174.73997 * 12 11 10 40 40 H 1.09005 * 109.45766 * 178.48522 * 13 12 11 41 41 H 1.09002 * 109.45811 * 58.53283 * 13 12 11 42 42 H 1.09002 * 109.46820 * 185.14022 * 16 14 13 43 43 H 1.08993 * 109.47211 * 305.14718 * 16 14 13 44 44 H 1.09003 * 109.47453 * 95.13448 * 18 17 16 45 45 H 1.08997 * 109.47283 * 215.13588 * 18 17 16 46 46 H 1.08997 * 109.47326 * 335.13550 * 18 17 16 47 47 H 0.96991 * 120.00432 * 180.02562 * 22 21 19 48 48 H 1.08994 * 109.58324 * 353.36959 * 27 10 8 49 49 H 1.09004 * 109.58646 * 113.79633 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 3.6604 1.0494 -0.0324 5 8 1.7143 2.1729 -1.0671 6 6 1.8829 2.1935 1.5957 7 6 2.5970 3.5412 1.7176 8 6 2.2569 4.1717 3.0434 9 8 1.5160 3.5997 3.8147 10 7 2.7752 5.3717 3.3718 11 6 3.6782 6.0745 2.4501 12 6 3.1303 7.4900 2.2139 13 6 2.9403 8.1888 3.5622 14 6 1.9231 7.4129 4.4020 15 1 0.9767 7.3541 3.8644 16 6 1.7087 8.1299 5.7365 17 7 1.0908 9.4362 5.4952 18 6 -0.3685 9.5632 5.4723 19 6 1.8772 10.5384 5.2909 20 1 2.8966 10.4196 4.9544 21 6 1.3644 11.8084 5.5166 22 7 0.2383 11.9548 6.1821 23 14 2.2723 13.3099 4.8757 24 1 1.7942 13.6304 3.5068 25 1 2.0147 14.4646 5.7731 26 1 3.7298 13.0280 4.8376 27 6 2.4534 5.9988 4.6609 28 1 -0.3633 0.5181 -0.8874 29 1 -0.3633 -1.0277 -0.0049 30 1 -0.3634 0.5094 0.8925 31 1 1.9501 -0.8399 -0.0041 32 1 0.8056 2.3456 1.6595 33 1 2.2058 1.5373 2.4038 34 1 3.6743 3.3886 1.6539 35 1 2.2745 4.1976 0.9094 36 1 4.6743 6.1337 2.8888 37 1 3.7251 5.5365 1.5032 38 1 2.1725 7.4305 1.6969 39 1 3.8367 8.0564 1.6070 40 1 2.5770 9.2032 3.3974 41 1 3.8937 8.2260 4.0893 42 1 1.0552 7.5304 6.3701 43 1 2.6691 8.2685 6.2329 44 1 -0.7220 9.8709 6.4565 45 1 -0.6567 10.3103 4.7329 46 1 -0.8128 8.6029 5.2107 47 1 -0.1203 12.8421 6.3395 48 1 1.6918 5.4109 5.1731 49 1 3.3519 6.0520 5.2758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752508041.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:37 Heat of formation + Delta-G solvation = -88.163303 kcal Electronic energy + Delta-G solvation = -29324.742842 eV Core-core repulsion = 25221.683871 eV Total energy + Delta-G solvation = -4103.058971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.29872 -37.77199 -37.51149 -36.37314 -35.55861 -35.44641 -33.73280 -32.70822 -31.67638 -30.31566 -26.66687 -26.45331 -25.86526 -25.70753 -24.12797 -22.39660 -21.22921 -19.87014 -19.56721 -19.05722 -18.22804 -17.62327 -16.88236 -16.65581 -16.26516 -16.02949 -15.87232 -15.13225 -15.03791 -14.43411 -14.19410 -14.15596 -14.08503 -13.66044 -13.41861 -13.30438 -13.21691 -12.97962 -12.81774 -12.55329 -12.49878 -12.39923 -12.35932 -12.08535 -11.91614 -11.67536 -11.32748 -11.24672 -10.98257 -10.83760 -10.73347 -10.60768 -10.36078 -10.31880 -10.10023 -10.04042 -9.87029 -9.76492 -9.65876 -8.61170 -8.50442 -6.72811 -5.71333 -3.16862 -0.19147 2.26296 2.47630 2.89198 3.34794 3.37076 3.43259 3.44871 3.79958 3.96546 4.30940 4.37501 4.49519 4.51843 4.74604 4.92139 4.95025 5.01400 5.07705 5.15579 5.22727 5.27065 5.27743 5.37668 5.41746 5.44743 5.63555 5.69494 5.85508 5.91269 6.01468 6.10353 6.17276 6.34959 6.43147 6.55400 6.60132 6.66837 6.78938 6.99086 6.99773 7.34729 7.39251 7.73842 7.81342 8.04798 8.40351 9.24476 9.89042 10.38483 11.33470 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.002110 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.594173 B =13268.478259 C =13615.093837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.123 6.123 3 S 2.614 3.386 4 O -0.957 6.957 5 O -0.952 6.952 6 C -0.611 4.611 7 C -0.135 4.135 8 C 0.521 3.479 9 O -0.542 6.542 10 N -0.605 5.605 11 C 0.102 3.898 12 C -0.136 4.136 13 C -0.112 4.112 14 C -0.118 4.118 15 H 0.065 0.935 16 C 0.158 3.842 17 N -0.600 5.600 18 C 0.163 3.837 19 C -0.251 4.251 20 H 0.072 0.928 21 C -0.001 4.001 22 N -0.907 5.907 23 Si 0.901 3.099 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.116 3.884 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.418 0.582 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.036 0.964 43 H 0.048 0.952 44 H 0.030 0.970 45 H 0.039 0.961 46 H -0.004 1.004 47 H 0.252 0.748 48 H 0.088 0.912 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -23.113 -11.606 26.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.882 5.882 3 S 2.705 3.295 4 O -0.947 6.947 5 O -0.942 6.942 6 C -0.740 4.740 7 C -0.177 4.177 8 C 0.308 3.692 9 O -0.420 6.420 10 N -0.337 5.337 11 C -0.021 4.021 12 C -0.174 4.174 13 C -0.149 4.149 14 C -0.141 4.141 15 H 0.084 0.916 16 C 0.030 3.970 17 N -0.322 5.322 18 C 0.018 3.982 19 C -0.381 4.381 20 H 0.090 0.910 21 C -0.199 4.199 22 N -0.552 5.552 23 Si 0.731 3.269 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.205 1.205 27 C -0.007 4.007 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.252 0.748 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.015 0.985 47 H 0.062 0.938 48 H 0.106 0.894 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.864 -22.763 -11.825 25.941 hybrid contribution 0.233 0.574 0.292 0.685 sum 4.097 -22.189 -11.534 25.341 Atomic orbital electron populations 1.21546 0.78533 1.04431 1.02203 1.55351 1.16114 1.24557 1.92217 1.04948 0.73727 0.73978 0.76846 1.93617 1.32680 1.81226 1.87203 1.93619 1.78616 1.72149 1.49842 1.30401 1.11957 1.07625 1.24048 1.21397 1.02505 0.94781 0.98986 1.20091 0.80299 0.81029 0.87815 1.90687 1.36739 1.62384 1.52153 1.48165 1.47232 1.18687 1.19631 1.21972 0.93184 0.93998 0.92930 1.22050 1.01422 0.94471 0.99480 1.21617 0.98668 1.01219 0.93437 1.22242 0.98635 0.92424 1.00760 0.91621 1.20667 0.97083 0.87247 0.92012 1.43859 1.02093 1.02985 1.83281 1.20772 0.82555 0.94596 1.00270 1.19210 0.96289 0.84348 1.38219 0.91033 1.25022 0.97895 0.97844 0.99152 1.70079 1.21705 1.21553 1.41855 0.86305 0.79208 0.83022 0.78325 1.21590 1.21852 1.20514 1.21792 1.00897 0.94462 0.83513 0.91196 0.89866 0.91966 0.74807 0.84193 0.84047 0.87362 0.87242 0.90926 0.90324 0.91716 0.90986 0.88812 0.92698 0.94555 0.93405 0.95188 0.94182 0.98496 0.93824 0.89374 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.32 11.04 59.85 0.66 0.98 16 2 N -1.12 -5.92 6.08 -16.63 -0.10 -6.02 16 3 S 2.61 20.29 5.46 -107.50 -0.59 19.70 16 4 O -0.96 -10.16 18.08 -57.54 -1.04 -11.20 16 5 O -0.95 -10.55 17.72 -57.54 -1.02 -11.57 16 6 C -0.61 -4.51 5.34 37.16 0.20 -4.31 16 7 C -0.14 -1.19 4.05 -27.88 -0.11 -1.30 16 8 C 0.52 6.63 7.70 -10.99 -0.08 6.54 16 9 O -0.54 -8.61 15.40 5.55 0.09 -8.52 16 10 N -0.60 -7.62 2.97 -172.48 -0.51 -8.13 16 11 C 0.10 1.04 6.37 -3.49 -0.02 1.01 16 12 C -0.14 -1.65 6.10 -26.39 -0.16 -1.81 16 13 C -0.11 -1.75 4.43 -26.69 -0.12 -1.87 16 14 C -0.12 -1.96 2.54 -90.48 -0.23 -2.19 16 15 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 16 C 0.16 3.11 5.15 -4.04 -0.02 3.09 16 17 N -0.60 -14.56 2.80 -181.12 -0.51 -15.06 16 18 C 0.16 4.00 8.98 59.85 0.54 4.54 16 19 C -0.25 -6.57 8.17 -15.06 -0.12 -6.69 16 20 H 0.07 1.80 6.72 -52.48 -0.35 1.45 16 21 C 0.00 -0.02 5.08 -17.43 -0.09 -0.11 16 22 N -0.91 -26.26 10.72 55.49 0.59 -25.66 16 23 Si 0.90 21.45 29.58 -169.99 -5.03 16.42 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 C 0.12 1.65 5.72 -3.69 -0.02 1.63 16 28 H 0.07 0.33 8.03 -51.93 -0.42 -0.09 16 29 H 0.08 0.17 8.14 -51.92 -0.42 -0.25 16 30 H 0.06 0.19 7.77 -51.93 -0.40 -0.21 16 31 H 0.42 1.53 8.92 -34.47 -0.31 1.22 16 32 H 0.14 0.96 7.75 -51.93 -0.40 0.56 16 33 H 0.14 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.11 0.72 7.93 -51.93 -0.41 0.31 16 35 H 0.11 0.80 7.70 -51.93 -0.40 0.40 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 1.79 5.96 -51.93 -0.31 1.48 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 43 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 44 H 0.03 0.80 7.36 -51.93 -0.38 0.42 16 45 H 0.04 1.05 7.31 -51.93 -0.38 0.67 16 46 H 0.00 -0.08 8.03 -51.93 -0.42 -0.49 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 48 H 0.09 1.37 7.00 -51.93 -0.36 1.00 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -36.41 396.71 -9.93 -46.34 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -8.21 Total: -1.77 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 0.41 Total: -0.49 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.53 Total: -54.89 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.97 Total: -31.30 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Atomic # 16 Polarization: 20.29 SS G_CDS: -0.59 Total: 19.70 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.41 -9.93 -46.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752508041.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.826 kcal (2) G-P(sol) polarization free energy of solvation -36.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds