Wall clock time and date at job start Wed Apr 1 2020 04:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 S 1.65605 * 119.99749 * 2 1 4 4 O 1.42098 * 104.27634 * 181.34781 * 3 2 1 5 5 O 1.42099 * 104.27671 * 309.20621 * 3 2 1 6 6 C 1.81402 * 104.44618 * 65.27751 * 3 2 1 7 7 C 1.53009 * 109.46948 * 179.97438 * 6 3 2 8 8 C 1.50693 * 109.47183 * 180.02562 * 7 6 3 9 9 O 1.21285 * 120.00278 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00427 * 180.02562 * 8 7 6 11 11 C 1.46929 * 120.62707 * 359.71564 * 10 8 7 12 12 C 1.53618 * 108.54182 * 126.36917 * 11 10 8 13 13 C 1.53045 * 109.24104 * 54.85908 * 12 11 10 14 14 C 1.53038 * 109.53632 * 298.51097 * 13 12 11 15 15 H 1.09002 * 109.49834 * 301.40918 * 14 13 12 16 16 C 1.53003 * 109.52137 * 181.33143 * 14 13 12 17 17 N 1.46503 * 109.47298 * 65.14533 * 16 14 13 18 18 C 1.46499 * 120.00109 * 89.99565 * 17 16 14 19 19 C 1.36937 * 120.00112 * 270.00351 * 17 16 14 20 20 H 1.08003 * 119.99932 * 22.10854 * 19 17 16 21 21 C 1.38810 * 120.00113 * 202.11374 * 19 17 16 22 22 N 1.31622 * 120.00023 * 14.13409 * 21 19 17 23 23 Si 1.86797 * 120.00285 * 194.13012 * 21 19 17 24 24 H 1.48498 * 109.46792 * 89.99866 * 23 21 19 25 25 H 1.48496 * 109.47302 * 210.00051 * 23 21 19 26 26 H 1.48499 * 109.46995 * 330.00453 * 23 21 19 27 27 C 1.46927 * 120.63453 * 180.02562 * 10 8 7 28 28 H 1.08994 * 109.47327 * 59.72186 * 1 2 3 29 29 H 1.09008 * 109.46833 * 179.72565 * 1 2 3 30 30 H 1.08998 * 109.47456 * 299.71870 * 1 2 3 31 31 H 0.96996 * 120.00732 * 180.28261 * 2 1 3 32 32 H 1.08993 * 109.47188 * 299.99790 * 6 3 2 33 33 H 1.08994 * 109.46977 * 60.00495 * 6 3 2 34 34 H 1.08995 * 109.46794 * 300.00405 * 7 6 3 35 35 H 1.08999 * 109.46572 * 60.00050 * 7 6 3 36 36 H 1.08997 * 109.58750 * 246.20619 * 11 10 8 37 37 H 1.09006 * 109.58717 * 6.63046 * 11 10 8 38 38 H 1.08999 * 109.63816 * 294.86696 * 12 11 10 39 39 H 1.09007 * 109.46245 * 174.73997 * 12 11 10 40 40 H 1.09005 * 109.45766 * 178.48522 * 13 12 11 41 41 H 1.09002 * 109.45811 * 58.53283 * 13 12 11 42 42 H 1.09002 * 109.46820 * 185.14022 * 16 14 13 43 43 H 1.08993 * 109.47211 * 305.14718 * 16 14 13 44 44 H 1.09003 * 109.47453 * 95.13448 * 18 17 16 45 45 H 1.08997 * 109.47283 * 215.13588 * 18 17 16 46 46 H 1.08997 * 109.47326 * 335.13550 * 18 17 16 47 47 H 0.96991 * 120.00432 * 180.02562 * 22 21 19 48 48 H 1.08994 * 109.58324 * 353.36959 * 27 10 8 49 49 H 1.09004 * 109.58646 * 113.79633 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 3.6604 1.0494 -0.0324 5 8 1.7143 2.1729 -1.0671 6 6 1.8829 2.1935 1.5957 7 6 2.5970 3.5412 1.7176 8 6 2.2569 4.1717 3.0434 9 8 1.5160 3.5997 3.8147 10 7 2.7752 5.3717 3.3718 11 6 3.6782 6.0745 2.4501 12 6 3.1303 7.4900 2.2139 13 6 2.9403 8.1888 3.5622 14 6 1.9231 7.4129 4.4020 15 1 0.9767 7.3541 3.8644 16 6 1.7087 8.1299 5.7365 17 7 1.0908 9.4362 5.4952 18 6 -0.3685 9.5632 5.4723 19 6 1.8772 10.5384 5.2909 20 1 2.8966 10.4196 4.9544 21 6 1.3644 11.8084 5.5166 22 7 0.2383 11.9548 6.1821 23 14 2.2723 13.3099 4.8757 24 1 1.7942 13.6304 3.5068 25 1 2.0147 14.4646 5.7731 26 1 3.7298 13.0280 4.8376 27 6 2.4534 5.9988 4.6609 28 1 -0.3633 0.5181 -0.8874 29 1 -0.3633 -1.0277 -0.0049 30 1 -0.3634 0.5094 0.8925 31 1 1.9501 -0.8399 -0.0041 32 1 0.8056 2.3456 1.6595 33 1 2.2058 1.5373 2.4038 34 1 3.6743 3.3886 1.6539 35 1 2.2745 4.1976 0.9094 36 1 4.6743 6.1337 2.8888 37 1 3.7251 5.5365 1.5032 38 1 2.1725 7.4305 1.6969 39 1 3.8367 8.0564 1.6070 40 1 2.5770 9.2032 3.3974 41 1 3.8937 8.2260 4.0893 42 1 1.0552 7.5304 6.3701 43 1 2.6691 8.2685 6.2329 44 1 -0.7220 9.8709 6.4565 45 1 -0.6567 10.3103 4.7329 46 1 -0.8128 8.6029 5.2107 47 1 -0.1203 12.8421 6.3395 48 1 1.6918 5.4109 5.1731 49 1 3.3519 6.0520 5.2758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752508041.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:36 Heat of formation + Delta-G solvation = -115.623277 kcal Electronic energy + Delta-G solvation = -29325.933596 eV Core-core repulsion = 25221.683871 eV Total energy + Delta-G solvation = -4104.249725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31085 -39.02582 -38.22607 -37.18188 -37.09179 -35.86551 -34.70713 -33.95995 -32.99199 -31.91944 -28.11104 -27.65096 -26.91234 -26.80508 -25.17965 -23.71068 -22.71038 -21.03432 -20.37928 -19.99791 -18.97820 -18.60424 -18.30672 -17.51467 -17.14086 -17.02295 -16.75867 -16.61963 -15.78382 -15.76902 -15.42561 -15.20338 -14.97308 -14.86329 -14.73118 -14.54721 -14.19881 -13.83537 -13.77380 -13.71365 -13.54981 -13.28354 -13.25237 -13.14319 -12.89153 -12.73692 -12.60332 -12.53038 -12.46743 -12.33586 -12.14736 -11.98934 -11.92562 -11.85943 -11.65732 -11.43194 -11.15364 -10.89524 -10.59146 -10.45504 -9.64145 -8.73495 -7.78254 -5.25508 -0.79724 1.47532 1.48883 1.53520 1.57017 1.72635 1.99070 2.53672 2.73630 3.21244 3.29147 3.34738 3.53395 3.68575 3.80577 3.88240 4.03099 4.11580 4.21052 4.23782 4.32431 4.43303 4.45801 4.54658 4.59241 4.65016 4.73213 4.78679 4.81171 4.85147 4.89970 4.92861 4.94542 5.00445 5.02957 5.22479 5.24878 5.35542 5.52504 5.59960 5.63540 5.67028 5.73667 6.11118 6.35986 6.39956 7.08551 7.18203 7.90704 8.36406 9.25737 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.002110 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.594173 B =13268.478259 C =13615.093837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.117 6.117 3 S 2.638 3.362 4 O -0.986 6.986 5 O -0.987 6.987 6 C -0.605 4.605 7 C -0.142 4.142 8 C 0.517 3.483 9 O -0.580 6.580 10 N -0.608 5.608 11 C 0.100 3.900 12 C -0.131 4.131 13 C -0.109 4.109 14 C -0.103 4.103 15 H 0.044 0.956 16 C 0.155 3.845 17 N -0.615 5.615 18 C 0.178 3.822 19 C -0.243 4.243 20 H 0.082 0.918 21 C -0.063 4.063 22 N -0.944 5.944 23 Si 0.964 3.036 24 H -0.289 1.289 25 H -0.301 1.301 26 H -0.264 1.264 27 C 0.124 3.876 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.427 0.573 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.050 0.950 44 H 0.003 0.997 45 H 0.014 0.986 46 H 0.022 0.978 47 H 0.245 0.755 48 H 0.073 0.927 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.857 -24.902 -13.075 28.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.879 5.879 3 S 2.731 3.269 4 O -0.976 6.976 5 O -0.977 6.977 6 C -0.735 4.735 7 C -0.183 4.183 8 C 0.305 3.695 9 O -0.460 6.460 10 N -0.340 5.340 11 C -0.021 4.021 12 C -0.169 4.169 13 C -0.147 4.147 14 C -0.125 4.125 15 H 0.062 0.938 16 C 0.029 3.971 17 N -0.338 5.338 18 C 0.033 3.967 19 C -0.373 4.373 20 H 0.100 0.900 21 C -0.257 4.257 22 N -0.592 5.592 23 Si 0.793 3.207 24 H -0.216 1.216 25 H -0.228 1.228 26 H -0.188 1.188 27 C 0.001 3.999 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.263 0.737 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.021 0.979 45 H 0.033 0.967 46 H 0.040 0.960 47 H 0.054 0.946 48 H 0.091 0.909 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.821 -24.596 -13.333 28.577 hybrid contribution -0.393 1.028 0.785 1.352 sum 5.427 -23.568 -12.549 27.247 Atomic orbital electron populations 1.21776 0.77577 1.06058 1.02405 1.55105 1.16721 1.24085 1.91975 1.04041 0.72756 0.73842 0.76303 1.93574 1.34613 1.81752 1.87640 1.93577 1.79060 1.73338 1.51690 1.30357 1.12278 1.07231 1.23676 1.21578 1.04486 0.95344 0.96922 1.20744 0.79329 0.80715 0.88703 1.90671 1.38363 1.63363 1.53623 1.48244 1.47531 1.18923 1.19255 1.22207 0.93123 0.92629 0.94189 1.21995 1.01815 0.95822 0.97242 1.21513 0.98193 0.99392 0.95586 1.21928 0.98240 0.93855 0.98470 0.93790 1.20839 0.96795 0.85517 0.93972 1.44099 1.01909 1.04350 1.83449 1.20480 0.83319 0.94931 0.97961 1.19569 0.96626 0.84881 1.36212 0.90047 1.25802 0.99047 1.00672 1.00208 1.70252 1.23541 1.21466 1.43950 0.85296 0.78879 0.79371 0.77156 1.21647 1.22797 1.18809 1.21515 1.00968 0.92535 0.84888 0.91993 0.87616 0.90890 0.73749 0.83725 0.83174 0.84689 0.85461 0.89045 0.86904 0.92650 0.88877 0.92568 0.92019 0.94280 0.93161 0.97871 0.96719 0.95966 0.94614 0.90867 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 11.04 127.77 1.41 1.83 16 2 N -1.12 -9.66 6.08 -206.54 -1.25 -10.91 16 3 S 2.64 35.98 5.46 -56.49 -0.31 35.67 16 4 O -0.99 -19.08 18.08 -127.65 -2.31 -21.39 16 5 O -0.99 -20.43 17.72 -127.65 -2.26 -22.69 16 6 C -0.61 -7.49 5.34 71.99 0.38 -7.11 16 7 C -0.14 -2.05 4.05 29.85 0.12 -1.93 16 8 C 0.52 11.92 7.70 87.66 0.67 12.60 16 9 O -0.58 -17.66 15.40 -3.04 -0.05 -17.71 16 10 N -0.61 -13.75 2.97 -818.01 -2.43 -16.18 16 11 C 0.10 1.65 6.37 86.51 0.55 2.20 16 12 C -0.13 -2.81 6.10 30.82 0.19 -2.62 16 13 C -0.11 -3.27 4.43 30.62 0.14 -3.13 16 14 C -0.10 -3.34 2.54 -10.70 -0.03 -3.36 16 15 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 16 C 0.16 6.09 5.15 86.38 0.44 6.53 16 17 N -0.62 -30.28 2.80 -726.94 -2.04 -32.32 16 18 C 0.18 9.03 8.98 127.77 1.15 10.18 16 19 C -0.24 -12.78 8.17 84.03 0.69 -12.09 16 20 H 0.08 4.05 6.72 -2.91 -0.02 4.03 16 21 C -0.06 -3.51 5.08 84.86 0.43 -3.08 16 22 N -0.94 -56.41 10.72 21.65 0.23 -56.18 16 23 Si 0.96 44.61 29.58 68.60 2.03 46.64 16 24 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 27 C 0.12 3.37 5.72 86.37 0.49 3.86 16 28 H 0.06 0.50 8.03 -2.39 -0.02 0.48 16 29 H 0.11 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.07 0.30 7.77 -2.39 -0.02 0.28 16 31 H 0.43 2.29 8.92 -96.75 -0.86 1.42 16 32 H 0.14 1.69 7.75 -2.39 -0.02 1.67 16 33 H 0.15 1.63 8.10 -2.39 -0.02 1.61 16 34 H 0.14 1.23 7.93 -2.39 -0.02 1.21 16 35 H 0.13 1.40 7.70 -2.39 -0.02 1.38 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.11 1.14 5.93 -2.38 -0.01 1.12 16 38 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.06 2.12 5.96 -2.38 -0.01 2.10 16 41 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.04 1.49 8.07 -2.39 -0.02 1.47 16 43 H 0.05 1.94 8.04 -2.39 -0.02 1.92 16 44 H 0.00 0.17 7.36 -2.39 -0.02 0.15 16 45 H 0.01 0.78 7.31 -2.39 -0.02 0.76 16 46 H 0.02 0.97 8.03 -2.39 -0.02 0.96 16 47 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 48 H 0.07 2.23 7.00 -2.39 -0.02 2.21 16 49 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -80.45 396.71 -1.66 -82.11 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.08 Total: 9.08 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 6.64 Total: 3.87 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -5.49 Total: -115.59 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -4.62 Total: -61.79 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 35.98 SS G_CDS: -0.31 Total: 35.67 kcal Total: -80.45 -1.66 -82.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752508041.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.514 kcal (2) G-P(sol) polarization free energy of solvation -80.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds