Wall clock time and date at job start Wed Apr 1 2020 04:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46826 * 2 1 4 4 C 1.52997 * 109.47290 * 119.99735 * 2 1 3 5 5 C 1.50699 * 109.47001 * 175.00362 * 4 2 1 6 6 O 1.21283 * 120.00432 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99934 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99940 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.46676 * 324.99179 * 8 7 5 10 10 C 1.52997 * 109.47387 * 84.99386 * 8 7 5 11 11 C 1.50698 * 109.47242 * 295.02580 * 10 8 7 12 12 C 1.34678 * 126.58672 * 85.02221 * 11 10 8 13 13 N 1.34135 * 108.01795 * 179.97438 * 12 11 10 14 14 C 1.30503 * 109.25513 * 0.02562 * 13 12 11 15 15 N 1.35040 * 108.69990 * 359.76929 * 14 13 12 16 16 H 0.97001 * 126.39859 * 180.26862 * 15 14 13 17 17 C 1.50700 * 109.47132 * 204.99576 * 8 7 5 18 18 O 1.21297 * 119.99850 * 324.73502 * 17 8 7 19 19 N 1.34768 * 120.00159 * 144.73340 * 17 8 7 20 20 C 1.37097 * 120.00101 * 184.48054 * 19 17 8 21 21 H 1.08004 * 120.00062 * 349.41748 * 20 19 17 22 22 C 1.38950 * 120.00490 * 169.41988 * 20 19 17 23 23 N 1.31409 * 119.99637 * 343.21169 * 22 20 19 24 24 Si 1.86793 * 120.00345 * 163.20950 * 22 20 19 25 25 H 1.48497 * 109.47300 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47184 * 119.99972 * 24 22 20 27 27 H 1.48504 * 109.47115 * 240.00097 * 24 22 20 28 28 C 1.46503 * 120.00353 * 4.47839 * 19 17 8 29 29 C 1.47199 * 109.47264 * 267.18347 * 28 19 17 30 30 N 6.98270 * 141.73455 * 189.59108 * 2 1 3 31 31 H 1.08998 * 109.47122 * 299.99953 * 1 2 3 32 32 H 1.08994 * 109.47407 * 60.00051 * 1 2 3 33 33 H 1.09002 * 109.46717 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47122 * 240.00047 * 2 1 3 35 35 H 1.09007 * 109.46873 * 300.00058 * 3 2 1 36 36 H 1.08998 * 109.47231 * 60.00114 * 3 2 1 37 37 H 1.09004 * 109.47164 * 180.02562 * 3 2 1 38 38 H 1.09001 * 109.46928 * 55.00452 * 4 2 1 39 39 H 1.08998 * 109.47263 * 294.99773 * 4 2 1 40 40 H 0.96995 * 119.99788 * 359.97438 * 7 5 4 41 41 H 1.08999 * 109.46979 * 175.03191 * 10 8 7 42 42 H 1.08999 * 109.46983 * 55.02562 * 10 8 7 43 43 H 1.07992 * 125.99228 * 359.96725 * 12 11 10 44 44 H 1.07994 * 125.64740 * 180.02562 * 14 13 12 45 45 H 0.97005 * 120.00576 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.46424 * 27.17672 * 28 19 17 47 47 H 1.08999 * 109.47136 * 147.18118 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.8292 1.1889 6 8 4.1451 -0.3746 0.2399 7 7 4.2150 -1.4319 2.1890 8 6 5.6751 -1.5365 2.1306 9 1 5.9880 -1.6794 1.0963 10 6 6.3007 -0.2529 2.6799 11 6 5.9470 0.9033 1.7804 12 6 4.8231 1.6437 1.8292 13 7 4.8944 2.5704 0.8621 14 6 6.0195 2.4319 0.2155 15 7 6.7082 1.4058 0.7598 16 1 7.5793 1.0841 0.4793 17 6 6.1282 -2.7108 2.9593 18 8 5.5403 -2.9944 3.9817 19 7 7.1866 -3.4457 2.5646 20 6 7.5427 -4.5676 3.2676 21 1 7.0900 -4.7699 4.2271 22 6 8.4859 -5.4444 2.7459 23 7 8.7928 -5.3956 1.4691 24 14 9.3177 -6.6924 3.8593 25 1 8.8003 -6.5435 5.2432 26 1 9.0290 -8.0638 3.3683 27 1 10.7848 -6.4624 3.8515 28 6 7.9568 -3.0460 1.3842 29 6 7.4246 -3.7322 0.1956 30 7 7.0125 -4.2640 -0.7205 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.1300 1.4426 -0.0005 38 1 1.6055 -1.7198 1.2951 39 1 1.7518 -0.1582 2.1369 40 1 3.7327 -1.7958 2.9478 41 1 7.3843 -0.3646 2.7188 42 1 5.9188 -0.0629 3.6830 43 1 4.0074 1.5140 2.5250 44 1 6.3474 3.0401 -0.6145 45 1 9.4516 -6.0073 1.1047 46 1 7.8776 -1.9676 1.2469 47 1 9.0029 -3.3189 1.5233 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362728496.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:18 Heat of formation + Delta-G solvation = 25.233655 kcal Electronic energy + Delta-G solvation = -32287.877020 eV Core-core repulsion = 28086.584110 eV Total energy + Delta-G solvation = -4201.292910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.84671 -39.90386 -38.84146 -36.18032 -35.60239 -34.63261 -34.26146 -32.45178 -32.06072 -31.45484 -28.86760 -27.72822 -27.24306 -26.87510 -25.34894 -23.53545 -21.31563 -20.89391 -20.48253 -19.72000 -19.32487 -18.19999 -17.81267 -17.17021 -16.43785 -16.06731 -15.74613 -15.44642 -15.08451 -14.64362 -14.33076 -14.17208 -13.99514 -13.92686 -13.54200 -13.36806 -13.23700 -13.15553 -13.00572 -12.68475 -12.41118 -12.12836 -12.04550 -11.90469 -11.78309 -11.65314 -11.48595 -11.28868 -11.25224 -10.90662 -10.68164 -10.66955 -10.53884 -10.50058 -10.46231 -9.73214 -9.61192 -9.46409 -9.35381 -9.02887 -8.79225 -8.31804 -7.84684 -6.66352 -4.17901 2.32213 2.89323 3.01480 3.11145 3.16958 3.21154 3.37558 3.45748 3.64192 3.66103 3.94860 4.03787 4.52717 4.74687 4.87037 4.88964 4.94747 5.03250 5.06020 5.11233 5.24350 5.32629 5.41188 5.51297 5.56767 5.61321 5.64491 5.67508 5.75231 5.86611 5.88027 5.92787 6.03574 6.04941 6.12047 6.30247 6.44159 6.48558 6.52101 6.70275 6.92220 7.03930 7.29245 7.62106 7.62989 7.85738 8.06356 8.33636 8.60161 8.73655 8.78879 8.98209 9.45718 10.36394 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.003550 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.875695 B = 7885.904090 C = 8478.713084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.155 4.155 4 C -0.135 4.135 5 C 0.514 3.486 6 O -0.523 6.523 7 N -0.712 5.712 8 C 0.140 3.860 9 H 0.095 0.905 10 C -0.052 4.052 11 C 0.001 3.999 12 C -0.012 4.012 13 N -0.485 5.485 14 C 0.178 3.822 15 N -0.560 5.560 16 H 0.415 0.585 17 C 0.445 3.555 18 O -0.569 6.569 19 N -0.433 5.433 20 C -0.311 4.311 21 H 0.114 0.886 22 C 0.031 3.969 23 N -0.881 5.881 24 Si 0.934 3.066 25 H -0.266 1.266 26 H -0.282 1.282 27 H -0.277 1.277 28 C 0.223 3.777 29 C 0.249 3.751 30 N -0.472 5.472 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.407 0.593 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.153 0.847 44 H 0.198 0.802 45 H 0.276 0.724 46 H 0.074 0.926 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.276 12.778 0.099 13.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 C -0.212 4.212 4 C -0.175 4.175 5 C 0.301 3.699 6 O -0.398 6.398 7 N -0.365 5.365 8 C 0.030 3.970 9 H 0.113 0.887 10 C -0.093 4.093 11 C -0.115 4.115 12 C -0.160 4.160 13 N -0.204 5.204 14 C -0.106 4.106 15 N -0.163 5.163 16 H 0.251 0.749 17 C 0.233 3.767 18 O -0.452 6.452 19 N -0.153 5.153 20 C -0.437 4.437 21 H 0.132 0.868 22 C -0.172 4.172 23 N -0.520 5.520 24 Si 0.760 3.240 25 H -0.190 1.190 26 H -0.208 1.208 27 H -0.203 1.203 28 C 0.095 3.905 29 C -0.069 4.069 30 N -0.152 5.152 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.243 0.757 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.170 0.830 44 H 0.214 0.786 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.247 12.661 -1.687 13.809 hybrid contribution 1.464 -1.697 0.952 2.435 sum -3.783 10.964 -0.735 11.622 Atomic orbital electron populations 1.21866 0.95572 1.01323 1.01666 1.20851 0.94494 0.97551 0.96918 1.22100 1.05394 0.93715 1.00039 1.21735 0.92277 1.02617 1.00861 1.20556 0.89928 0.77310 0.82136 1.90669 1.69978 1.46211 1.32975 1.45758 1.06157 1.60154 1.24476 1.20748 0.82032 0.93306 1.00906 0.88691 1.20418 1.01259 0.89667 0.97912 1.20886 0.95093 1.00481 0.95004 1.21639 0.97595 0.96189 1.00540 1.70148 1.17964 1.24459 1.07859 1.24642 0.90647 0.93374 1.01912 1.43108 1.18883 1.27434 1.26858 0.74854 1.19870 0.82267 0.86316 0.88271 1.90554 1.56111 1.72424 1.26099 1.43672 1.24626 1.23854 1.23114 1.19890 1.21869 0.99022 1.02959 0.86787 1.25312 0.97677 0.98284 0.95895 1.69715 1.32978 1.38540 1.10811 0.85721 0.78804 0.79352 0.80079 1.18977 1.20755 1.20292 1.18929 0.99128 0.93745 0.78657 1.28999 0.92250 0.92285 0.93344 1.80923 1.10261 1.10356 1.13655 0.92794 0.92708 0.93020 0.90931 0.94084 0.93892 0.88132 0.89431 0.89198 0.75724 0.89930 0.88542 0.82996 0.78558 0.91278 0.90774 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16 2 C -0.08 -0.97 2.57 -90.62 -0.23 -1.20 16 3 C -0.16 -2.05 8.93 37.16 0.33 -1.71 16 4 C -0.13 -1.60 5.17 -27.89 -0.14 -1.74 16 5 C 0.51 7.62 5.50 -10.98 -0.06 7.56 16 6 O -0.52 -8.97 10.96 5.55 0.06 -8.91 16 7 N -0.71 -10.72 5.00 -54.93 -0.27 -11.00 16 8 C 0.14 2.26 1.81 -69.08 -0.13 2.13 16 9 H 0.10 1.68 5.51 -51.93 -0.29 1.39 16 10 C -0.05 -0.70 5.26 -27.89 -0.15 -0.84 16 11 C 0.00 0.02 4.89 -81.60 -0.40 -0.38 16 12 C -0.01 -0.17 7.77 -17.81 -0.14 -0.30 16 13 N -0.49 -6.96 9.73 -14.66 -0.14 -7.10 16 14 C 0.18 2.12 13.04 -90.38 -1.18 0.94 16 15 N -0.56 -6.37 6.15 -10.30 -0.06 -6.43 16 16 H 0.41 3.57 8.96 -40.82 -0.37 3.20 16 17 C 0.45 8.96 6.75 -10.99 -0.07 8.88 16 18 O -0.57 -12.92 15.82 5.54 0.09 -12.84 16 19 N -0.43 -9.25 2.59 -117.93 -0.31 -9.56 16 20 C -0.31 -7.42 9.47 -14.93 -0.14 -7.57 16 21 H 0.11 2.88 7.25 -52.48 -0.38 2.50 16 22 C 0.03 0.73 5.09 -17.47 -0.09 0.64 16 23 N -0.88 -20.81 8.60 55.50 0.48 -20.33 16 24 Si 0.93 18.66 29.58 -169.99 -5.03 13.63 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 28 C 0.22 4.16 4.81 -6.83 -0.03 4.13 16 29 C 0.25 5.45 12.74 -20.74 -0.26 5.19 16 30 N -0.47 -11.33 18.54 42.18 0.78 -10.55 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 1.03 7.95 -51.93 -0.41 0.61 16 35 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 1.53 3.18 -51.93 -0.16 1.37 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.41 5.89 7.94 -40.82 -0.32 5.57 16 41 H 0.08 0.98 7.65 -51.93 -0.40 0.58 16 42 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.15 2.08 7.91 -52.49 -0.42 1.67 16 44 H 0.20 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 46 H 0.07 1.07 5.86 -51.93 -0.30 0.77 16 47 H 0.13 2.55 6.39 -51.93 -0.33 2.22 16 LS Contribution 381.41 15.07 5.75 5.75 Total: -1.00 -31.31 381.41 -7.34 -38.64 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.32 Total: 14.09 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: -2.35 Total: 14.61 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: 0.47 Total: -64.97 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: 0.15 Total: -21.74 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.31 -7.34 -38.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362728496.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.878 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds