Wall clock time and date at job start Wed Apr 1 2020 04:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46826 * 2 1 4 4 C 1.52997 * 109.47290 * 119.99735 * 2 1 3 5 5 C 1.50699 * 109.47001 * 175.00362 * 4 2 1 6 6 O 1.21283 * 120.00432 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99934 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99940 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.46676 * 324.99179 * 8 7 5 10 10 C 1.52997 * 109.47387 * 84.99386 * 8 7 5 11 11 C 1.50698 * 109.47242 * 295.02580 * 10 8 7 12 12 C 1.34678 * 126.58672 * 85.02221 * 11 10 8 13 13 N 1.34135 * 108.01795 * 179.97438 * 12 11 10 14 14 C 1.30503 * 109.25513 * 0.02562 * 13 12 11 15 15 N 1.35040 * 108.69990 * 359.76929 * 14 13 12 16 16 H 0.97001 * 126.39859 * 180.26862 * 15 14 13 17 17 C 1.50700 * 109.47132 * 204.99576 * 8 7 5 18 18 O 1.21297 * 119.99850 * 324.73502 * 17 8 7 19 19 N 1.34768 * 120.00159 * 144.73340 * 17 8 7 20 20 C 1.37097 * 120.00101 * 184.48054 * 19 17 8 21 21 H 1.08004 * 120.00062 * 349.41748 * 20 19 17 22 22 C 1.38950 * 120.00490 * 169.41988 * 20 19 17 23 23 N 1.31409 * 119.99637 * 343.21169 * 22 20 19 24 24 Si 1.86793 * 120.00345 * 163.20950 * 22 20 19 25 25 H 1.48497 * 109.47300 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47184 * 119.99972 * 24 22 20 27 27 H 1.48504 * 109.47115 * 240.00097 * 24 22 20 28 28 C 1.46503 * 120.00353 * 4.47839 * 19 17 8 29 29 C 1.47199 * 109.47264 * 267.18347 * 28 19 17 30 30 N 6.98270 * 141.73455 * 189.59108 * 2 1 3 31 31 H 1.08998 * 109.47122 * 299.99953 * 1 2 3 32 32 H 1.08994 * 109.47407 * 60.00051 * 1 2 3 33 33 H 1.09002 * 109.46717 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47122 * 240.00047 * 2 1 3 35 35 H 1.09007 * 109.46873 * 300.00058 * 3 2 1 36 36 H 1.08998 * 109.47231 * 60.00114 * 3 2 1 37 37 H 1.09004 * 109.47164 * 180.02562 * 3 2 1 38 38 H 1.09001 * 109.46928 * 55.00452 * 4 2 1 39 39 H 1.08998 * 109.47263 * 294.99773 * 4 2 1 40 40 H 0.96995 * 119.99788 * 359.97438 * 7 5 4 41 41 H 1.08999 * 109.46979 * 175.03191 * 10 8 7 42 42 H 1.08999 * 109.46983 * 55.02562 * 10 8 7 43 43 H 1.07992 * 125.99228 * 359.96725 * 12 11 10 44 44 H 1.07994 * 125.64740 * 180.02562 * 14 13 12 45 45 H 0.97005 * 120.00576 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.46424 * 27.17672 * 28 19 17 47 47 H 1.08999 * 109.47136 * 147.18118 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.8292 1.1889 6 8 4.1451 -0.3746 0.2399 7 7 4.2150 -1.4319 2.1890 8 6 5.6751 -1.5365 2.1306 9 1 5.9880 -1.6794 1.0963 10 6 6.3007 -0.2529 2.6799 11 6 5.9470 0.9033 1.7804 12 6 4.8231 1.6437 1.8292 13 7 4.8944 2.5704 0.8621 14 6 6.0195 2.4319 0.2155 15 7 6.7082 1.4058 0.7598 16 1 7.5793 1.0841 0.4793 17 6 6.1282 -2.7108 2.9593 18 8 5.5403 -2.9944 3.9817 19 7 7.1866 -3.4457 2.5646 20 6 7.5427 -4.5676 3.2676 21 1 7.0900 -4.7699 4.2271 22 6 8.4859 -5.4444 2.7459 23 7 8.7928 -5.3956 1.4691 24 14 9.3177 -6.6924 3.8593 25 1 8.8003 -6.5435 5.2432 26 1 9.0290 -8.0638 3.3683 27 1 10.7848 -6.4624 3.8515 28 6 7.9568 -3.0460 1.3842 29 6 7.4246 -3.7322 0.1956 30 7 7.0125 -4.2640 -0.7205 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.1300 1.4426 -0.0005 38 1 1.6055 -1.7198 1.2951 39 1 1.7518 -0.1582 2.1369 40 1 3.7327 -1.7958 2.9478 41 1 7.3843 -0.3646 2.7188 42 1 5.9188 -0.0629 3.6830 43 1 4.0074 1.5140 2.5250 44 1 6.3474 3.0401 -0.6145 45 1 9.4516 -6.0073 1.1047 46 1 7.8776 -1.9676 1.2469 47 1 9.0029 -3.3189 1.5233 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362728496.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:17 Heat of formation + Delta-G solvation = 5.778255 kcal Electronic energy + Delta-G solvation = -32288.720670 eV Core-core repulsion = 28086.584110 eV Total energy + Delta-G solvation = -4202.136560 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.83792 -41.25646 -40.23233 -37.78727 -36.81651 -36.17337 -35.68422 -33.85227 -33.37908 -32.57229 -30.01292 -29.27142 -28.36247 -27.80740 -26.87574 -24.87029 -22.29071 -21.99310 -21.58308 -20.95654 -20.57242 -19.91655 -18.96273 -18.37088 -18.04303 -17.47394 -17.04560 -16.60359 -16.40105 -16.06410 -15.56936 -15.50482 -15.25725 -15.02786 -14.83560 -14.65826 -14.51078 -14.30831 -14.15130 -13.99506 -13.74771 -13.56068 -13.34177 -13.12650 -13.02141 -12.96479 -12.92392 -12.72147 -12.56831 -12.34350 -12.21457 -12.07980 -11.91066 -11.64386 -11.50642 -11.18796 -10.76867 -10.65877 -10.51536 -10.46958 -10.12244 -10.03565 -8.89878 -8.42823 -6.00405 1.27223 1.37506 1.48268 1.59027 1.65947 1.87896 1.97904 2.23263 2.30234 2.38430 2.50443 2.51644 2.95634 3.05242 3.54091 3.68982 3.87149 3.97952 3.98501 4.05044 4.11056 4.18683 4.32090 4.36160 4.41405 4.55461 4.70932 4.73959 4.75476 4.85332 4.89822 4.92377 4.93678 4.95361 5.15657 5.23343 5.35358 5.42090 5.45031 5.53930 5.56729 5.85542 5.92153 6.03716 6.30361 6.67967 6.79524 7.01053 7.04783 7.25947 7.37812 7.43985 7.77108 8.57405 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.003550 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.875695 B = 7885.904090 C = 8478.713084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 C -0.151 4.151 4 C -0.131 4.131 5 C 0.512 3.488 6 O -0.545 6.545 7 N -0.713 5.713 8 C 0.153 3.847 9 H 0.084 0.916 10 C -0.044 4.044 11 C -0.006 4.006 12 C -0.020 4.020 13 N -0.514 5.514 14 C 0.181 3.819 15 N -0.553 5.553 16 H 0.428 0.572 17 C 0.449 3.551 18 O -0.597 6.597 19 N -0.446 5.446 20 C -0.334 4.334 21 H 0.093 0.907 22 C 0.005 3.995 23 N -0.896 5.896 24 Si 0.990 3.010 25 H -0.269 1.269 26 H -0.291 1.291 27 H -0.264 1.264 28 C 0.225 3.775 29 C 0.263 3.737 30 N -0.515 5.515 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.038 0.962 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.410 0.590 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.149 0.851 44 H 0.230 0.770 45 H 0.276 0.724 46 H 0.121 0.879 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 13.910 0.297 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.095 4.095 3 C -0.208 4.208 4 C -0.171 4.171 5 C 0.300 3.700 6 O -0.422 6.422 7 N -0.367 5.367 8 C 0.043 3.957 9 H 0.102 0.898 10 C -0.084 4.084 11 C -0.123 4.123 12 C -0.168 4.168 13 N -0.234 5.234 14 C -0.102 4.102 15 N -0.157 5.157 16 H 0.267 0.733 17 C 0.238 3.762 18 O -0.481 6.481 19 N -0.165 5.165 20 C -0.461 4.461 21 H 0.111 0.889 22 C -0.196 4.196 23 N -0.535 5.535 24 Si 0.814 3.186 25 H -0.193 1.193 26 H -0.218 1.218 27 H -0.189 1.189 28 C 0.099 3.901 29 C -0.055 4.055 30 N -0.197 5.197 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.246 0.754 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.167 0.833 44 H 0.246 0.754 45 H 0.086 0.914 46 H 0.139 0.861 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.105 13.801 -1.493 14.791 hybrid contribution 1.369 -2.006 0.876 2.582 sum -3.736 11.795 -0.618 12.388 Atomic orbital electron populations 1.21817 0.93562 1.02071 1.02437 1.20800 0.96097 0.96628 0.95992 1.22030 1.04253 0.94385 1.00183 1.21785 0.89998 1.03658 1.01645 1.21060 0.91038 0.76516 0.81417 1.90658 1.70692 1.47123 1.33766 1.45811 1.05716 1.60338 1.24807 1.20562 0.82993 0.92894 0.99243 0.89842 1.20322 1.02095 0.88142 0.97835 1.20751 0.95366 1.00511 0.95663 1.21680 0.97856 0.96582 1.00701 1.70132 1.19351 1.25264 1.08607 1.25322 0.89904 0.93156 1.01854 1.43089 1.19327 1.27090 1.26155 0.73250 1.20533 0.81270 0.86599 0.87836 1.90534 1.56799 1.73321 1.27483 1.43779 1.25516 1.23554 1.23685 1.19796 1.22859 1.00565 1.02891 0.88932 1.25871 0.97613 0.99367 0.96785 1.69795 1.33163 1.39062 1.11527 0.84907 0.78512 0.76805 0.78337 1.19290 1.21769 1.18904 1.19192 0.98397 0.95960 0.76573 1.29630 0.91162 0.91400 0.93282 1.80919 1.11714 1.11851 1.15170 0.91563 0.92427 0.92292 0.93332 0.94274 0.93330 0.89876 0.88237 0.87018 0.75398 0.88134 0.88363 0.83329 0.75393 0.91370 0.86143 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.19 71.98 0.66 -1.86 16 2 C -0.08 -1.77 2.57 -10.79 -0.03 -1.80 16 3 C -0.15 -3.83 8.93 71.98 0.64 -3.19 16 4 C -0.13 -2.91 5.17 29.85 0.15 -2.76 16 5 C 0.51 14.68 5.50 87.66 0.48 15.16 16 6 O -0.55 -18.29 10.96 -3.04 -0.03 -18.33 16 7 N -0.71 -20.85 5.00 -446.09 -2.23 -23.08 16 8 C 0.15 4.77 1.81 44.24 0.08 4.85 16 9 H 0.08 2.85 5.51 -2.39 -0.01 2.83 16 10 C -0.04 -1.09 5.26 29.85 0.16 -0.93 16 11 C -0.01 -0.16 4.89 40.95 0.20 0.04 16 12 C -0.02 -0.55 7.77 83.52 0.65 0.10 16 13 N -0.51 -14.04 9.73 -200.31 -1.95 -15.99 16 14 C 0.18 3.95 13.04 180.26 2.35 6.30 16 15 N -0.55 -11.33 6.15 -186.49 -1.15 -12.48 16 16 H 0.43 6.21 8.96 -92.71 -0.83 5.37 16 17 C 0.45 17.83 6.75 87.66 0.59 18.42 16 18 O -0.60 -27.14 15.82 -3.08 -0.05 -27.19 16 19 N -0.45 -18.85 2.59 -645.41 -1.67 -20.52 16 20 C -0.33 -16.02 9.47 84.04 0.80 -15.23 16 21 H 0.09 4.77 7.25 -2.91 -0.02 4.75 16 22 C 0.01 0.23 5.09 84.93 0.43 0.66 16 23 N -0.90 -41.97 8.60 21.66 0.19 -41.78 16 24 Si 0.99 38.03 29.58 68.60 2.03 40.06 16 25 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 26 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 28 C 0.23 8.16 4.81 84.57 0.41 8.56 16 29 C 0.26 11.35 12.74 89.43 1.14 12.49 16 30 N -0.52 -24.77 18.54 20.01 0.37 -24.39 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 1.36 7.95 -2.39 -0.02 1.34 16 35 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 2.47 3.18 -2.39 -0.01 2.46 16 38 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.41 11.56 7.94 -92.71 -0.74 10.83 16 41 H 0.10 2.12 7.65 -2.39 -0.02 2.10 16 42 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.15 3.95 7.91 -2.91 -0.02 3.93 16 44 H 0.23 3.16 8.06 -2.91 -0.02 3.13 16 45 H 0.28 12.57 8.31 -92.70 -0.77 11.80 16 46 H 0.12 3.19 5.86 -2.39 -0.01 3.17 16 47 H 0.13 4.93 6.39 -2.39 -0.02 4.91 16 Total: -1.00 -67.94 381.41 3.70 -64.24 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: -0.53 Total: 38.65 kcal Atomic # 6 Polarization: 32.10 SS G_CDS: 8.72 Total: 40.82 kcal Atomic # 7 Polarization: -131.80 SS G_CDS: -6.44 Total: -138.24 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -0.08 Total: -45.52 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -67.94 3.70 -64.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362728496.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.017 kcal (2) G-P(sol) polarization free energy of solvation -67.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds