Wall clock time and date at job start Wed Apr 1 2020 04:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47054 * 2 1 4 4 C 1.53002 * 109.47368 * 119.99909 * 2 1 3 5 5 C 1.52996 * 109.47062 * 64.99843 * 4 2 1 6 6 H 1.08997 * 109.47192 * 305.00435 * 5 4 2 7 7 C 1.52997 * 109.47342 * 185.00169 * 5 4 2 8 8 N 1.46495 * 109.47426 * 175.00321 * 7 5 4 9 9 C 1.38113 * 120.00313 * 180.02562 * 8 7 5 10 10 N 1.32862 * 120.80991 * 359.97438 * 9 8 7 11 11 C 1.32126 * 121.19483 * 179.97438 * 10 9 8 12 12 N 1.31509 * 122.64214 * 359.97438 * 11 10 9 13 13 C 1.33197 * 120.68587 * 0.02562 * 12 11 10 14 14 C 1.40812 * 120.81518 * 179.71917 * 9 8 7 15 15 C 1.41174 * 134.69524 * 0.67784 * 14 9 8 16 16 N 1.30251 * 108.46682 * 179.54921 * 15 14 9 17 17 N 1.36315 * 134.61763 * 180.02562 * 13 12 11 18 18 C 1.46502 * 125.87012 * 359.97438 * 17 13 12 19 19 C 1.50694 * 109.47174 * 90.00262 * 18 17 13 20 20 H 1.07998 * 120.00527 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00112 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99712 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00443 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46934 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47191 * 119.99545 * 23 21 19 26 26 H 1.48502 * 109.47341 * 240.00450 * 23 21 19 27 27 C 1.50706 * 109.47215 * 65.00349 * 5 4 2 28 28 O 1.20825 * 119.99859 * 359.97438 * 27 5 4 29 29 O 1.34224 * 120.00295 * 180.02562 * 27 5 4 30 30 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46868 * 300.00172 * 1 2 3 32 32 H 1.08996 * 109.47390 * 60.00270 * 1 2 3 33 33 H 1.09007 * 109.46955 * 239.99847 * 2 1 3 34 34 H 1.09007 * 109.47051 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47088 * 299.99479 * 3 2 1 36 36 H 1.08997 * 109.47423 * 60.00168 * 3 2 1 37 37 H 1.09004 * 109.46614 * 305.00230 * 4 2 1 38 38 H 1.08999 * 109.47099 * 185.00020 * 4 2 1 39 39 H 1.08998 * 109.47008 * 295.00541 * 7 5 4 40 40 H 1.09004 * 109.47121 * 55.00163 * 7 5 4 41 41 H 0.97005 * 119.99830 * 359.97438 * 8 7 5 42 42 H 1.07994 * 118.67640 * 180.02562 * 11 10 9 43 43 H 1.07997 * 125.76359 * 359.31297 * 15 14 9 44 44 H 1.09003 * 109.46517 * 210.00171 * 18 17 13 45 45 H 1.08999 * 109.47237 * 329.99706 * 18 17 13 46 46 H 0.97000 * 120.00072 * 179.97438 * 22 21 19 47 47 H 0.96700 * 117.00196 * 179.97438 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 1 0.5563 -2.2706 1.0528 7 6 2.0354 -2.8888 2.4918 8 7 1.5427 -4.2684 2.4825 9 6 1.7840 -5.0952 3.5621 10 7 2.4616 -4.6563 4.6173 11 6 2.6963 -5.4406 5.6544 12 7 2.2808 -6.6871 5.7096 13 6 1.5930 -7.2196 4.7009 14 6 1.3133 -6.4223 3.5737 15 6 0.5873 -7.2263 2.6684 16 7 0.4311 -8.4060 3.1980 17 7 1.0391 -8.4415 4.4593 18 6 1.0759 -9.5944 5.3625 19 6 -0.1248 -9.5583 6.2723 20 1 -0.8434 -8.7566 6.1868 21 6 -0.3062 -10.5489 7.2141 22 7 0.5686 -11.5255 7.3180 23 14 -1.7941 -10.5039 8.3424 24 1 -2.6201 -9.3113 8.0250 25 1 -2.6034 -11.7330 8.1436 26 1 -1.3421 -10.4318 9.7552 27 6 2.3342 -2.8606 0.0304 28 8 3.0793 -2.2211 -0.6737 29 8 2.1284 -4.1633 -0.2191 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9564 0.8900 37 1 1.6053 -0.2617 2.1370 38 1 3.1263 -0.6443 1.2951 39 1 3.1215 -2.8914 2.5834 40 1 1.6009 -2.3535 3.3362 41 1 1.0463 -4.6009 1.7183 42 1 3.2510 -5.0417 6.4908 43 1 0.2199 -6.9145 1.7019 44 1 1.0614 -10.5143 4.7780 45 1 1.9864 -9.5584 5.9607 46 1 0.4412 -12.2222 7.9808 47 1 2.5985 -4.5456 -0.9727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591687109.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:07 Heat of formation + Delta-G solvation = 5.585323 kcal Electronic energy + Delta-G solvation = -30106.883305 eV Core-core repulsion = 25904.738380 eV Total energy + Delta-G solvation = -4202.144926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.39845 -40.96894 -38.49161 -37.60893 -36.66144 -35.87000 -33.83978 -33.04075 -31.54810 -31.23505 -29.36978 -27.57288 -27.28621 -26.12126 -24.86137 -23.89527 -23.27145 -22.22971 -21.10342 -20.37817 -20.00547 -18.59560 -17.81916 -17.37098 -17.34174 -16.67093 -16.42187 -15.91257 -15.49788 -15.17576 -15.03492 -14.61941 -14.40819 -14.26548 -14.18318 -13.91757 -13.62792 -13.30440 -13.23063 -12.80868 -12.68106 -12.55639 -12.29356 -12.14712 -12.01517 -11.92997 -11.64972 -11.35318 -11.15295 -11.09009 -11.03053 -10.98082 -10.88531 -10.76295 -10.51267 -10.28399 -10.07503 -9.80630 -9.25451 -8.67435 -8.59324 -8.20545 -7.62846 -6.21425 -4.27649 1.32245 1.80344 1.95395 2.59920 2.91836 3.04445 3.12092 3.23668 3.30695 3.37348 4.11623 4.18742 4.31688 4.40408 4.46863 4.59688 4.63907 4.66905 4.76421 4.85807 4.99361 5.01463 5.14080 5.19252 5.22396 5.28082 5.35180 5.42795 5.43842 5.48394 5.56005 5.59368 5.62237 5.73849 5.81228 5.92474 5.99988 6.21306 6.31868 6.68616 6.93148 7.04120 7.12005 7.23511 7.48947 7.54718 7.73393 7.91360 7.93806 8.24648 8.72969 8.83876 9.37292 10.86851 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.002141 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.291553 B =13077.621020 C =13261.673178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.144 4.144 4 C -0.097 4.097 5 C -0.097 4.097 6 H 0.118 0.882 7 C 0.141 3.859 8 N -0.705 5.705 9 C 0.510 3.490 10 N -0.620 5.620 11 C 0.366 3.634 12 N -0.554 5.554 13 C 0.362 3.638 14 C -0.335 4.335 15 C 0.070 3.930 16 N -0.244 5.244 17 N -0.332 5.332 18 C 0.263 3.737 19 C -0.532 4.532 20 H 0.062 0.938 21 C 0.065 3.935 22 N -0.891 5.891 23 Si 0.908 3.092 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.280 1.280 27 C 0.483 3.517 28 O -0.508 6.508 29 O -0.514 6.514 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.415 0.585 42 H 0.195 0.805 43 H 0.183 0.817 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.267 0.733 47 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 22.957 -15.331 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.125 4.125 3 C -0.201 4.201 4 C -0.135 4.135 5 C -0.117 4.117 6 H 0.136 0.864 7 C 0.016 3.984 8 N -0.340 5.340 9 C 0.257 3.743 10 N -0.351 5.351 11 C 0.073 3.927 12 N -0.279 5.279 13 C 0.114 3.886 14 C -0.353 4.353 15 C -0.125 4.125 16 N -0.060 5.060 17 N -0.118 5.118 18 C 0.146 3.854 19 C -0.570 4.570 20 H 0.080 0.920 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.735 3.265 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.206 1.206 27 C 0.325 3.675 28 O -0.396 6.396 29 O -0.327 6.327 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.253 0.747 42 H 0.211 0.789 43 H 0.199 0.801 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 2.869 22.142 -14.349 26.540 hybrid contribution -0.793 -0.084 -0.670 1.042 sum 2.075 22.058 -15.019 26.766 Atomic orbital electron populations 1.21959 0.95416 1.01598 1.02058 1.21290 0.95472 0.96767 0.98951 1.21779 1.01172 0.95540 1.01624 1.21527 1.02598 0.90102 0.99247 1.21559 1.02451 0.96359 0.91306 0.86427 1.21221 1.00433 0.81788 0.94911 1.44325 1.60262 1.11101 1.18326 1.17871 0.85402 0.84714 0.86286 1.67941 1.25094 1.38993 1.03080 1.24397 0.90904 0.84046 0.93401 1.67513 1.17765 1.14333 1.28287 1.18946 0.92175 0.87630 0.89817 1.19591 1.17390 0.96784 1.01554 1.23377 0.99022 0.90639 0.99479 1.76942 1.15066 1.20326 0.93669 1.49451 1.39911 1.09641 1.12836 1.19795 0.99419 0.79949 0.86206 1.21282 1.07845 1.10383 1.17521 0.92000 1.24907 0.97068 0.94781 0.97023 1.69929 1.35349 1.12453 1.35185 0.86284 0.81980 0.78092 0.80185 1.19709 1.20675 1.20589 1.23394 0.79311 0.79864 0.84920 1.90702 1.35522 1.64624 1.48713 1.84472 1.68687 1.26295 1.53203 0.92847 0.92386 0.92638 0.89639 0.92537 0.92780 0.92720 0.89804 0.90327 0.90828 0.89550 0.74676 0.78890 0.80053 0.92821 0.92268 0.92331 0.72750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.96 37.16 0.33 -0.49 16 2 C -0.11 -0.67 2.71 -90.62 -0.25 -0.91 16 3 C -0.14 -0.84 9.19 37.16 0.34 -0.50 16 4 C -0.10 -0.57 3.80 -26.73 -0.10 -0.67 16 5 C -0.10 -0.61 2.24 -91.77 -0.21 -0.82 16 6 H 0.12 0.60 6.34 -51.93 -0.33 0.27 16 7 C 0.14 1.15 5.11 -4.05 -0.02 1.13 16 8 N -0.70 -7.32 5.18 -60.09 -0.31 -7.63 16 9 C 0.51 7.62 7.55 -154.85 -1.17 6.45 16 10 N -0.62 -9.55 9.69 -13.62 -0.13 -9.68 16 11 C 0.37 6.05 12.24 -92.11 -1.13 4.92 16 12 N -0.55 -11.59 10.47 -13.97 -0.15 -11.74 16 13 C 0.36 7.94 8.04 -156.23 -1.26 6.69 16 14 C -0.34 -6.00 6.14 -106.82 -0.66 -6.65 16 15 C 0.07 1.17 11.87 -17.11 -0.20 0.96 16 16 N -0.24 -5.19 12.45 30.80 0.38 -4.80 16 17 N -0.33 -7.92 3.63 -61.64 -0.22 -8.14 16 18 C 0.26 7.02 6.19 -5.20 -0.03 6.99 16 19 C -0.53 -15.17 9.39 -34.44 -0.32 -15.50 16 20 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 21 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 22 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 23 Si 0.91 21.70 29.54 -169.99 -5.02 16.68 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.48 3.74 7.30 36.01 0.26 4.00 16 28 O -0.51 -5.23 14.75 -18.75 -0.28 -5.50 16 29 O -0.51 -3.18 11.42 -39.24 -0.45 -3.63 16 30 H 0.05 0.27 6.46 -51.93 -0.34 -0.06 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.70 5.88 -51.93 -0.31 0.39 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.53 7.96 -51.93 -0.41 0.12 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.41 3.67 6.81 -40.82 -0.28 3.40 16 42 H 0.19 2.40 8.06 -52.49 -0.42 1.98 16 43 H 0.18 2.07 8.06 -52.49 -0.42 1.65 16 44 H 0.05 1.48 8.14 -51.93 -0.42 1.05 16 45 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 46 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.41 1.22 9.10 45.56 0.41 1.63 16 LS Contribution 394.14 15.07 5.94 5.94 Total: -1.00 -34.97 394.14 -9.87 -44.83 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.87 Total: 1.39 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -4.50 Total: 7.34 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: 0.31 Total: -67.05 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.72 Total: -9.14 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.97 -9.87 -44.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591687109.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.417 kcal (2) G-P(sol) polarization free energy of solvation -34.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds