Wall clock time and date at job start Wed Apr 1 2020 04:35:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53002 * 109.47054 * 2 1
4 4 C 1.53002 * 109.47368 * 119.99909 * 2 1 3
5 5 C 1.52996 * 109.47062 * 64.99843 * 4 2 1
6 6 H 1.08997 * 109.47192 * 305.00435 * 5 4 2
7 7 C 1.52997 * 109.47342 * 185.00169 * 5 4 2
8 8 N 1.46495 * 109.47426 * 175.00321 * 7 5 4
9 9 C 1.38113 * 120.00313 * 180.02562 * 8 7 5
10 10 N 1.32862 * 120.80991 * 359.97438 * 9 8 7
11 11 C 1.32126 * 121.19483 * 179.97438 * 10 9 8
12 12 N 1.31509 * 122.64214 * 359.97438 * 11 10 9
13 13 C 1.33197 * 120.68587 * 0.02562 * 12 11 10
14 14 C 1.40812 * 120.81518 * 179.71917 * 9 8 7
15 15 C 1.41174 * 134.69524 * 0.67784 * 14 9 8
16 16 N 1.30251 * 108.46682 * 179.54921 * 15 14 9
17 17 N 1.36315 * 134.61763 * 180.02562 * 13 12 11
18 18 C 1.46502 * 125.87012 * 359.97438 * 17 13 12
19 19 C 1.50694 * 109.47174 * 90.00262 * 18 17 13
20 20 H 1.07998 * 120.00527 * 359.97438 * 19 18 17
21 21 C 1.37882 * 120.00112 * 179.97438 * 19 18 17
22 22 N 1.31517 * 119.99712 * 359.97438 * 21 19 18
23 23 Si 1.86793 * 120.00443 * 179.97438 * 21 19 18
24 24 H 1.48509 * 109.46934 * 0.02562 * 23 21 19
25 25 H 1.48495 * 109.47191 * 119.99545 * 23 21 19
26 26 H 1.48502 * 109.47341 * 240.00450 * 23 21 19
27 27 C 1.50706 * 109.47215 * 65.00349 * 5 4 2
28 28 O 1.20825 * 119.99859 * 359.97438 * 27 5 4
29 29 O 1.34224 * 120.00295 * 180.02562 * 27 5 4
30 30 H 1.09000 * 109.46920 * 180.02562 * 1 2 3
31 31 H 1.08997 * 109.46868 * 300.00172 * 1 2 3
32 32 H 1.08996 * 109.47390 * 60.00270 * 1 2 3
33 33 H 1.09007 * 109.46955 * 239.99847 * 2 1 3
34 34 H 1.09007 * 109.47051 * 180.02562 * 3 2 1
35 35 H 1.09003 * 109.47088 * 299.99479 * 3 2 1
36 36 H 1.08997 * 109.47423 * 60.00168 * 3 2 1
37 37 H 1.09004 * 109.46614 * 305.00230 * 4 2 1
38 38 H 1.08999 * 109.47099 * 185.00020 * 4 2 1
39 39 H 1.08998 * 109.47008 * 295.00541 * 7 5 4
40 40 H 1.09004 * 109.47121 * 55.00163 * 7 5 4
41 41 H 0.97005 * 119.99830 * 359.97438 * 8 7 5
42 42 H 1.07994 * 118.67640 * 180.02562 * 11 10 9
43 43 H 1.07997 * 125.76359 * 359.31297 * 15 14 9
44 44 H 1.09003 * 109.46517 * 210.00171 * 18 17 13
45 45 H 1.08999 * 109.47237 * 329.99706 * 18 17 13
46 46 H 0.97000 * 120.00072 * 179.97438 * 22 21 19
47 47 H 0.96700 * 117.00196 * 179.97438 * 29 27 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 1.6353 -2.1954 1.1880
6 1 0.5563 -2.2706 1.0528
7 6 2.0354 -2.8888 2.4918
8 7 1.5427 -4.2684 2.4825
9 6 1.7840 -5.0952 3.5621
10 7 2.4616 -4.6563 4.6173
11 6 2.6963 -5.4406 5.6544
12 7 2.2808 -6.6871 5.7096
13 6 1.5930 -7.2196 4.7009
14 6 1.3133 -6.4223 3.5737
15 6 0.5873 -7.2263 2.6684
16 7 0.4311 -8.4060 3.1980
17 7 1.0391 -8.4415 4.4593
18 6 1.0759 -9.5944 5.3625
19 6 -0.1248 -9.5583 6.2723
20 1 -0.8434 -8.7566 6.1868
21 6 -0.3062 -10.5489 7.2141
22 7 0.5686 -11.5255 7.3180
23 14 -1.7941 -10.5039 8.3424
24 1 -2.6201 -9.3113 8.0250
25 1 -2.6034 -11.7330 8.1436
26 1 -1.3421 -10.4318 9.7552
27 6 2.3342 -2.8606 0.0304
28 8 3.0793 -2.2211 -0.6737
29 8 2.1284 -4.1633 -0.2191
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 1.8933 -0.5139 -0.8900
34 1 3.1300 1.4425 -0.0005
35 1 1.6767 1.9563 -0.8901
36 1 1.6767 1.9564 0.8900
37 1 1.6053 -0.2617 2.1370
38 1 3.1263 -0.6443 1.2951
39 1 3.1215 -2.8914 2.5834
40 1 1.6009 -2.3535 3.3362
41 1 1.0463 -4.6009 1.7183
42 1 3.2510 -5.0417 6.4908
43 1 0.2199 -6.9145 1.7019
44 1 1.0614 -10.5143 4.7780
45 1 1.9864 -9.5584 5.9607
46 1 0.4412 -12.2222 7.9808
47 1 2.5985 -4.5456 -0.9727
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000591687109.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:35:07
Heat of formation + Delta-G solvation = 5.585323 kcal
Electronic energy + Delta-G solvation = -30106.883305 eV
Core-core repulsion = 25904.738380 eV
Total energy + Delta-G solvation = -4202.144926 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.39845 -40.96894 -38.49161 -37.60893 -36.66144 -35.87000 -33.83978 -33.04075
-31.54810 -31.23505 -29.36978 -27.57288 -27.28621 -26.12126 -24.86137 -23.89527
-23.27145 -22.22971 -21.10342 -20.37817 -20.00547 -18.59560 -17.81916 -17.37098
-17.34174 -16.67093 -16.42187 -15.91257 -15.49788 -15.17576 -15.03492 -14.61941
-14.40819 -14.26548 -14.18318 -13.91757 -13.62792 -13.30440 -13.23063 -12.80868
-12.68106 -12.55639 -12.29356 -12.14712 -12.01517 -11.92997 -11.64972 -11.35318
-11.15295 -11.09009 -11.03053 -10.98082 -10.88531 -10.76295 -10.51267 -10.28399
-10.07503 -9.80630 -9.25451 -8.67435 -8.59324 -8.20545 -7.62846 -6.21425
-4.27649 1.32245 1.80344 1.95395 2.59920 2.91836 3.04445 3.12092
3.23668 3.30695 3.37348 4.11623 4.18742 4.31688 4.40408 4.46863
4.59688 4.63907 4.66905 4.76421 4.85807 4.99361 5.01463 5.14080
5.19252 5.22396 5.28082 5.35180 5.42795 5.43842 5.48394 5.56005
5.59368 5.62237 5.73849 5.81228 5.92474 5.99988 6.21306 6.31868
6.68616 6.93148 7.04120 7.12005 7.23511 7.48947 7.54718 7.73393
7.91360 7.93806 8.24648 8.72969 8.83876 9.37292 10.86851
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.020996 B = 0.002141 C = 0.002111
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1333.291553 B =13077.621020 C =13261.673178
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.106 4.106
3 C -0.144 4.144
4 C -0.097 4.097
5 C -0.097 4.097
6 H 0.118 0.882
7 C 0.141 3.859
8 N -0.705 5.705
9 C 0.510 3.490
10 N -0.620 5.620
11 C 0.366 3.634
12 N -0.554 5.554
13 C 0.362 3.638
14 C -0.335 4.335
15 C 0.070 3.930
16 N -0.244 5.244
17 N -0.332 5.332
18 C 0.263 3.737
19 C -0.532 4.532
20 H 0.062 0.938
21 C 0.065 3.935
22 N -0.891 5.891
23 Si 0.908 3.092
24 H -0.273 1.273
25 H -0.281 1.281
26 H -0.280 1.280
27 C 0.483 3.517
28 O -0.508 6.508
29 O -0.514 6.514
30 H 0.053 0.947
31 H 0.057 0.943
32 H 0.055 0.945
33 H 0.085 0.915
34 H 0.056 0.944
35 H 0.053 0.947
36 H 0.054 0.946
37 H 0.083 0.917
38 H 0.078 0.922
39 H 0.073 0.927
40 H 0.086 0.914
41 H 0.415 0.585
42 H 0.195 0.805
43 H 0.183 0.817
44 H 0.054 0.946
45 H 0.060 0.940
46 H 0.267 0.733
47 H 0.413 0.587
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.799 22.957 -15.331 27.747
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.125 4.125
3 C -0.201 4.201
4 C -0.135 4.135
5 C -0.117 4.117
6 H 0.136 0.864
7 C 0.016 3.984
8 N -0.340 5.340
9 C 0.257 3.743
10 N -0.351 5.351
11 C 0.073 3.927
12 N -0.279 5.279
13 C 0.114 3.886
14 C -0.353 4.353
15 C -0.125 4.125
16 N -0.060 5.060
17 N -0.118 5.118
18 C 0.146 3.854
19 C -0.570 4.570
20 H 0.080 0.920
21 C -0.138 4.138
22 N -0.529 5.529
23 Si 0.735 3.265
24 H -0.197 1.197
25 H -0.207 1.207
26 H -0.206 1.206
27 C 0.325 3.675
28 O -0.396 6.396
29 O -0.327 6.327
30 H 0.072 0.928
31 H 0.076 0.924
32 H 0.074 0.926
33 H 0.104 0.896
34 H 0.075 0.925
35 H 0.072 0.928
36 H 0.073 0.927
37 H 0.102 0.898
38 H 0.097 0.903
39 H 0.092 0.908
40 H 0.105 0.895
41 H 0.253 0.747
42 H 0.211 0.789
43 H 0.199 0.801
44 H 0.072 0.928
45 H 0.077 0.923
46 H 0.077 0.923
47 H 0.272 0.728
Dipole moment (debyes) X Y Z Total
from point charges 2.869 22.142 -14.349 26.540
hybrid contribution -0.793 -0.084 -0.670 1.042
sum 2.075 22.058 -15.019 26.766
Atomic orbital electron populations
1.21959 0.95416 1.01598 1.02058 1.21290 0.95472 0.96767 0.98951
1.21779 1.01172 0.95540 1.01624 1.21527 1.02598 0.90102 0.99247
1.21559 1.02451 0.96359 0.91306 0.86427 1.21221 1.00433 0.81788
0.94911 1.44325 1.60262 1.11101 1.18326 1.17871 0.85402 0.84714
0.86286 1.67941 1.25094 1.38993 1.03080 1.24397 0.90904 0.84046
0.93401 1.67513 1.17765 1.14333 1.28287 1.18946 0.92175 0.87630
0.89817 1.19591 1.17390 0.96784 1.01554 1.23377 0.99022 0.90639
0.99479 1.76942 1.15066 1.20326 0.93669 1.49451 1.39911 1.09641
1.12836 1.19795 0.99419 0.79949 0.86206 1.21282 1.07845 1.10383
1.17521 0.92000 1.24907 0.97068 0.94781 0.97023 1.69929 1.35349
1.12453 1.35185 0.86284 0.81980 0.78092 0.80185 1.19709 1.20675
1.20589 1.23394 0.79311 0.79864 0.84920 1.90702 1.35522 1.64624
1.48713 1.84472 1.68687 1.26295 1.53203 0.92847 0.92386 0.92638
0.89639 0.92537 0.92780 0.92720 0.89804 0.90327 0.90828 0.89550
0.74676 0.78890 0.80053 0.92821 0.92268 0.92331 0.72750
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.83 8.96 37.16 0.33 -0.49 16
2 C -0.11 -0.67 2.71 -90.62 -0.25 -0.91 16
3 C -0.14 -0.84 9.19 37.16 0.34 -0.50 16
4 C -0.10 -0.57 3.80 -26.73 -0.10 -0.67 16
5 C -0.10 -0.61 2.24 -91.77 -0.21 -0.82 16
6 H 0.12 0.60 6.34 -51.93 -0.33 0.27 16
7 C 0.14 1.15 5.11 -4.05 -0.02 1.13 16
8 N -0.70 -7.32 5.18 -60.09 -0.31 -7.63 16
9 C 0.51 7.62 7.55 -154.85 -1.17 6.45 16
10 N -0.62 -9.55 9.69 -13.62 -0.13 -9.68 16
11 C 0.37 6.05 12.24 -92.11 -1.13 4.92 16
12 N -0.55 -11.59 10.47 -13.97 -0.15 -11.74 16
13 C 0.36 7.94 8.04 -156.23 -1.26 6.69 16
14 C -0.34 -6.00 6.14 -106.82 -0.66 -6.65 16
15 C 0.07 1.17 11.87 -17.11 -0.20 0.96 16
16 N -0.24 -5.19 12.45 30.80 0.38 -4.80 16
17 N -0.33 -7.92 3.63 -61.64 -0.22 -8.14 16
18 C 0.26 7.02 6.19 -5.20 -0.03 6.99 16
19 C -0.53 -15.17 9.39 -34.44 -0.32 -15.50 16
20 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16
21 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16
22 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16
23 Si 0.91 21.70 29.54 -169.99 -5.02 16.68 16
24 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16
25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
27 C 0.48 3.74 7.30 36.01 0.26 4.00 16
28 O -0.51 -5.23 14.75 -18.75 -0.28 -5.50 16
29 O -0.51 -3.18 11.42 -39.24 -0.45 -3.63 16
30 H 0.05 0.27 6.46 -51.93 -0.34 -0.06 16
31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16
32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16
33 H 0.09 0.70 5.88 -51.93 -0.31 0.39 16
34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16
35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16
36 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16
37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
38 H 0.08 0.53 7.96 -51.93 -0.41 0.12 16
39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
41 H 0.41 3.67 6.81 -40.82 -0.28 3.40 16
42 H 0.19 2.40 8.06 -52.49 -0.42 1.98 16
43 H 0.18 2.07 8.06 -52.49 -0.42 1.65 16
44 H 0.05 1.48 8.14 -51.93 -0.42 1.05 16
45 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16
46 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16
47 H 0.41 1.22 9.10 45.56 0.41 1.63 16
LS Contribution 394.14 15.07 5.94 5.94
Total: -1.00 -34.97 394.14 -9.87 -44.83
By element:
Atomic # 1 Polarization: 7.25 SS G_CDS: -5.87 Total: 1.39 kcal
Atomic # 6 Polarization: 11.84 SS G_CDS: -4.50 Total: 7.34 kcal
Atomic # 7 Polarization: -67.35 SS G_CDS: 0.31 Total: -67.05 kcal
Atomic # 8 Polarization: -8.41 SS G_CDS: -0.72 Total: -9.14 kcal
Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -34.97 -9.87 -44.83 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591687109.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.417 kcal
(2) G-P(sol) polarization free energy of solvation -34.967 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.451 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.832 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.585 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds