Wall clock time and date at job start Wed Apr 1 2020 04:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47054 * 2 1 4 4 C 1.53002 * 109.47368 * 119.99909 * 2 1 3 5 5 C 1.52996 * 109.47062 * 64.99843 * 4 2 1 6 6 H 1.08997 * 109.47192 * 305.00435 * 5 4 2 7 7 C 1.52997 * 109.47342 * 185.00169 * 5 4 2 8 8 N 1.46495 * 109.47426 * 175.00321 * 7 5 4 9 9 C 1.38113 * 120.00313 * 180.02562 * 8 7 5 10 10 N 1.32862 * 120.80991 * 359.97438 * 9 8 7 11 11 C 1.32126 * 121.19483 * 179.97438 * 10 9 8 12 12 N 1.31509 * 122.64214 * 359.97438 * 11 10 9 13 13 C 1.33197 * 120.68587 * 0.02562 * 12 11 10 14 14 C 1.40812 * 120.81518 * 179.71917 * 9 8 7 15 15 C 1.41174 * 134.69524 * 0.67784 * 14 9 8 16 16 N 1.30251 * 108.46682 * 179.54921 * 15 14 9 17 17 N 1.36315 * 134.61763 * 180.02562 * 13 12 11 18 18 C 1.46502 * 125.87012 * 359.97438 * 17 13 12 19 19 C 1.50694 * 109.47174 * 90.00262 * 18 17 13 20 20 H 1.07998 * 120.00527 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00112 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99712 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00443 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46934 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47191 * 119.99545 * 23 21 19 26 26 H 1.48502 * 109.47341 * 240.00450 * 23 21 19 27 27 C 1.50706 * 109.47215 * 65.00349 * 5 4 2 28 28 O 1.20825 * 119.99859 * 359.97438 * 27 5 4 29 29 O 1.34224 * 120.00295 * 180.02562 * 27 5 4 30 30 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46868 * 300.00172 * 1 2 3 32 32 H 1.08996 * 109.47390 * 60.00270 * 1 2 3 33 33 H 1.09007 * 109.46955 * 239.99847 * 2 1 3 34 34 H 1.09007 * 109.47051 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47088 * 299.99479 * 3 2 1 36 36 H 1.08997 * 109.47423 * 60.00168 * 3 2 1 37 37 H 1.09004 * 109.46614 * 305.00230 * 4 2 1 38 38 H 1.08999 * 109.47099 * 185.00020 * 4 2 1 39 39 H 1.08998 * 109.47008 * 295.00541 * 7 5 4 40 40 H 1.09004 * 109.47121 * 55.00163 * 7 5 4 41 41 H 0.97005 * 119.99830 * 359.97438 * 8 7 5 42 42 H 1.07994 * 118.67640 * 180.02562 * 11 10 9 43 43 H 1.07997 * 125.76359 * 359.31297 * 15 14 9 44 44 H 1.09003 * 109.46517 * 210.00171 * 18 17 13 45 45 H 1.08999 * 109.47237 * 329.99706 * 18 17 13 46 46 H 0.97000 * 120.00072 * 179.97438 * 22 21 19 47 47 H 0.96700 * 117.00196 * 179.97438 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 1 0.5563 -2.2706 1.0528 7 6 2.0354 -2.8888 2.4918 8 7 1.5427 -4.2684 2.4825 9 6 1.7840 -5.0952 3.5621 10 7 2.4616 -4.6563 4.6173 11 6 2.6963 -5.4406 5.6544 12 7 2.2808 -6.6871 5.7096 13 6 1.5930 -7.2196 4.7009 14 6 1.3133 -6.4223 3.5737 15 6 0.5873 -7.2263 2.6684 16 7 0.4311 -8.4060 3.1980 17 7 1.0391 -8.4415 4.4593 18 6 1.0759 -9.5944 5.3625 19 6 -0.1248 -9.5583 6.2723 20 1 -0.8434 -8.7566 6.1868 21 6 -0.3062 -10.5489 7.2141 22 7 0.5686 -11.5255 7.3180 23 14 -1.7941 -10.5039 8.3424 24 1 -2.6201 -9.3113 8.0250 25 1 -2.6034 -11.7330 8.1436 26 1 -1.3421 -10.4318 9.7552 27 6 2.3342 -2.8606 0.0304 28 8 3.0793 -2.2211 -0.6737 29 8 2.1284 -4.1633 -0.2191 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9564 0.8900 37 1 1.6053 -0.2617 2.1370 38 1 3.1263 -0.6443 1.2951 39 1 3.1215 -2.8914 2.5834 40 1 1.6009 -2.3535 3.3362 41 1 1.0463 -4.6009 1.7183 42 1 3.2510 -5.0417 6.4908 43 1 0.2199 -6.9145 1.7019 44 1 1.0614 -10.5143 4.7780 45 1 1.9864 -9.5584 5.9607 46 1 0.4412 -12.2222 7.9808 47 1 2.5985 -4.5456 -0.9727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591687109.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:06 Heat of formation + Delta-G solvation = -16.706403 kcal Electronic energy + Delta-G solvation = -30107.849947 eV Core-core repulsion = 25904.738380 eV Total energy + Delta-G solvation = -4203.111567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.78642 -41.59829 -39.82271 -38.22277 -37.50156 -36.57334 -35.72099 -34.24246 -33.10528 -32.49641 -30.57251 -29.16343 -27.98763 -26.89650 -25.73076 -25.26707 -24.93725 -23.54589 -21.70836 -21.56488 -20.75037 -19.47513 -18.99768 -18.75855 -18.60348 -17.92317 -17.61972 -16.98518 -16.65381 -16.43246 -16.11486 -15.68122 -15.32972 -15.28699 -15.09317 -14.94958 -14.82234 -14.58321 -14.36544 -13.94851 -13.66407 -13.57826 -13.12373 -13.01705 -13.01613 -12.83849 -12.74473 -12.53010 -12.48195 -12.41784 -12.34780 -12.29348 -11.81958 -11.68429 -11.58835 -11.48425 -11.45225 -11.07142 -10.75085 -10.58318 -10.04143 -9.73765 -8.96023 -8.34537 -6.51342 0.00104 0.56162 1.21098 1.33964 1.35997 1.41798 1.52011 1.67209 1.98415 2.15423 2.32656 2.95097 3.04756 3.27838 3.43167 3.56184 3.61939 3.72977 3.90901 3.98240 4.13650 4.16531 4.18256 4.38218 4.46885 4.53082 4.68102 4.80017 4.85121 4.86439 4.88838 4.89610 4.94873 5.05086 5.11674 5.15700 5.17920 5.37259 5.48543 5.49267 5.55228 5.58098 5.73465 5.78143 5.79588 5.98119 6.14603 6.54671 6.61486 6.81774 7.02389 7.18130 7.48744 8.73238 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.002141 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.291553 B =13077.621020 C =13261.673178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.144 4.144 4 C -0.095 4.095 5 C -0.087 4.087 6 H 0.138 0.862 7 C 0.141 3.859 8 N -0.680 5.680 9 C 0.519 3.481 10 N -0.614 5.614 11 C 0.376 3.624 12 N -0.606 5.606 13 C 0.335 3.665 14 C -0.343 4.343 15 C 0.102 3.898 16 N -0.291 5.291 17 N -0.367 5.367 18 C 0.284 3.716 19 C -0.549 4.549 20 H 0.046 0.954 21 C 0.017 3.983 22 N -0.920 5.920 23 Si 0.977 3.023 24 H -0.273 1.273 25 H -0.268 1.268 26 H -0.269 1.269 27 C 0.483 3.517 28 O -0.537 6.537 29 O -0.513 6.513 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.425 0.575 42 H 0.230 0.770 43 H 0.239 0.761 44 H 0.030 0.970 45 H 0.032 0.968 46 H 0.274 0.726 47 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.559 25.518 -15.920 30.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.123 4.123 3 C -0.201 4.201 4 C -0.133 4.133 5 C -0.106 4.106 6 H 0.155 0.845 7 C 0.017 3.983 8 N -0.314 5.314 9 C 0.264 3.736 10 N -0.346 5.346 11 C 0.083 3.917 12 N -0.333 5.333 13 C 0.088 3.912 14 C -0.361 4.361 15 C -0.093 4.093 16 N -0.106 5.106 17 N -0.153 5.153 18 C 0.165 3.835 19 C -0.587 4.587 20 H 0.064 0.936 21 C -0.183 4.183 22 N -0.558 5.558 23 Si 0.800 3.200 24 H -0.198 1.198 25 H -0.193 1.193 26 H -0.194 1.194 27 C 0.327 3.673 28 O -0.427 6.427 29 O -0.327 6.327 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.266 0.734 42 H 0.246 0.754 43 H 0.255 0.745 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.083 0.917 47 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 1.631 24.746 -15.012 28.990 hybrid contribution -0.301 -0.662 -0.638 0.967 sum 1.330 24.085 -15.651 28.754 Atomic orbital electron populations 1.21954 0.94510 1.02039 1.02414 1.21234 0.96177 0.96696 0.98223 1.21780 1.00724 0.95506 1.02127 1.21526 1.02085 0.89852 0.99803 1.21537 1.03386 0.96116 0.89599 0.84459 1.21370 1.00175 0.80332 0.96419 1.44431 1.58556 1.11450 1.16928 1.17966 0.84333 0.84193 0.87091 1.68098 1.25227 1.38197 1.03040 1.25166 0.89340 0.82778 0.94377 1.67524 1.19978 1.16404 1.29419 1.19379 0.92595 0.87595 0.91615 1.19722 1.18108 0.97700 1.00589 1.24258 0.95945 0.88691 1.00377 1.76892 1.17516 1.22935 0.93293 1.49079 1.42575 1.09758 1.13897 1.19110 0.97596 0.80737 0.86015 1.21408 1.08284 1.10351 1.18691 0.93573 1.25821 1.00062 0.94133 0.98302 1.70024 1.36970 1.12976 1.35874 0.85232 0.78196 0.78319 0.78225 1.19792 1.19321 1.19437 1.23660 0.78722 0.80076 0.84865 1.90707 1.36814 1.65316 1.49871 1.84423 1.68761 1.25573 1.53985 0.92336 0.91534 0.92841 0.91696 0.93280 0.92781 0.91733 0.87996 0.91407 0.91381 0.88360 0.73423 0.75396 0.74544 0.95163 0.95025 0.91736 0.71085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.96 71.98 0.64 -0.59 16 2 C -0.10 -1.11 2.71 -10.79 -0.03 -1.14 16 3 C -0.14 -1.45 9.19 71.98 0.66 -0.79 16 4 C -0.09 -0.87 3.80 30.59 0.12 -0.75 16 5 C -0.09 -0.81 2.24 -11.54 -0.03 -0.83 16 6 H 0.14 0.79 6.34 -2.39 -0.02 0.78 16 7 C 0.14 1.78 5.11 86.38 0.44 2.22 16 8 N -0.68 -11.58 5.18 -344.01 -1.78 -13.37 16 9 C 0.52 14.16 7.55 133.64 1.01 15.17 16 10 N -0.61 -17.49 9.69 -197.01 -1.91 -19.40 16 11 C 0.38 11.99 12.24 180.87 2.21 14.20 16 12 N -0.61 -25.83 10.47 -198.11 -2.07 -27.90 16 13 C 0.33 15.01 8.04 134.15 1.08 16.09 16 14 C -0.34 -11.84 6.14 -21.29 -0.13 -11.97 16 15 C 0.10 3.23 11.87 85.65 1.02 4.25 16 16 N -0.29 -12.56 12.45 -56.46 -0.70 -13.26 16 17 N -0.37 -18.29 3.63 -348.94 -1.27 -19.55 16 18 C 0.28 16.20 6.19 85.63 0.53 16.73 16 19 C -0.55 -32.71 9.39 25.60 0.24 -32.47 16 20 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 21 C 0.02 1.00 5.46 84.66 0.46 1.46 16 22 N -0.92 -54.72 13.29 21.45 0.28 -54.44 16 23 Si 0.98 45.00 29.54 68.60 2.03 47.03 16 24 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 27 C 0.48 6.27 7.30 71.24 0.52 6.79 16 28 O -0.54 -10.30 14.75 21.97 0.32 -9.98 16 29 O -0.51 -4.79 11.42 -51.35 -0.59 -5.38 16 30 H 0.06 0.41 6.46 -2.39 -0.02 0.39 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.99 5.88 -2.38 -0.01 0.97 16 34 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 36 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.10 0.58 8.14 -2.38 -0.02 0.57 16 38 H 0.07 0.79 7.96 -2.39 -0.02 0.77 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.43 5.65 6.81 -92.70 -0.63 5.02 16 42 H 0.23 5.23 8.06 -2.91 -0.02 5.21 16 43 H 0.24 4.38 8.06 -2.91 -0.02 4.35 16 44 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.03 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 47 H 0.43 1.42 9.10 -74.06 -0.67 0.75 16 Total: -1.00 -80.56 394.14 2.78 -77.78 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -0.28 Total: 10.11 kcal Atomic # 6 Polarization: 19.60 SS G_CDS: 8.75 Total: 28.35 kcal Atomic # 7 Polarization: -140.47 SS G_CDS: -7.45 Total: -147.92 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.26 Total: -15.36 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -80.56 2.78 -77.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591687109.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.078 kcal (2) G-P(sol) polarization free energy of solvation -80.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds