Wall clock time and date at job start Wed Apr 1 2020 04:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47090 * 2 1 4 4 N 1.29946 * 126.28262 * 90.02882 * 3 2 1 5 5 O 1.21300 * 110.24653 * 179.97438 * 4 3 2 6 6 C 1.33639 * 109.81661 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.55487 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47245 * 269.97905 * 7 6 5 9 9 C 1.52999 * 109.46831 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47014 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00157 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00286 * 180.02562 * 10 9 8 13 13 C 1.39470 * 120.00249 * 179.97438 * 12 10 9 14 14 C 1.36110 * 126.21551 * 359.69179 * 13 12 10 15 15 C 1.39757 * 107.83076 * 179.90479 * 14 13 12 16 16 C 1.50702 * 125.84148 * 180.14615 * 15 14 13 17 17 N 1.30854 * 108.32006 * 0.36063 * 15 14 13 18 18 N 1.35259 * 126.21717 * 179.97438 * 13 12 10 19 19 C 1.46492 * 126.04519 * 359.96749 * 18 13 12 20 20 C 1.50703 * 109.47120 * 90.00121 * 19 18 13 21 21 H 1.08003 * 119.99956 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99769 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99389 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00082 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46945 * 90.00364 * 24 22 20 26 26 H 1.48502 * 109.46807 * 209.99830 * 24 22 20 27 27 H 1.48499 * 109.47416 * 330.00072 * 24 22 20 28 28 N 1.31140 * 106.89456 * 359.77589 * 6 5 4 29 29 H 1.09005 * 109.47366 * 59.99142 * 1 2 3 30 30 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 31 31 H 1.09011 * 109.46854 * 299.99717 * 1 2 3 32 32 H 1.08994 * 109.46812 * 240.00616 * 2 1 3 33 33 H 1.08997 * 109.47178 * 120.00239 * 2 1 3 34 34 H 1.08996 * 109.46950 * 29.98168 * 7 6 5 35 35 H 1.09001 * 109.47200 * 149.97819 * 7 6 5 36 36 H 1.08996 * 109.47361 * 300.00011 * 8 7 6 37 37 H 1.08999 * 109.46771 * 60.00540 * 8 7 6 38 38 H 1.09003 * 109.47580 * 300.00042 * 9 8 7 39 39 H 1.08997 * 109.47405 * 60.00583 * 9 8 7 40 40 H 0.96999 * 119.99674 * 0.02562 * 12 10 9 41 41 H 1.08004 * 126.08631 * 0.02562 * 14 13 12 42 42 H 1.08999 * 109.46715 * 270.22925 * 16 15 14 43 43 H 1.08999 * 109.47217 * 30.22990 * 16 15 14 44 44 H 1.08997 * 109.47308 * 150.23258 * 16 15 14 45 45 H 1.09004 * 109.46830 * 209.99348 * 19 18 13 46 46 H 1.08994 * 109.47482 * 329.99383 * 19 18 13 47 47 H 0.97008 * 119.99348 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6781 3.2447 0.7124 6 6 2.7077 3.3277 -0.6211 7 6 3.1300 4.5223 -1.4368 8 6 1.9127 5.4069 -1.7137 9 6 2.3416 6.6201 -2.5414 10 6 1.1428 7.4918 -2.8136 11 8 0.0525 7.1737 -2.3879 12 7 1.2819 8.6243 -3.5309 13 6 0.1723 9.4307 -3.7833 14 6 -1.1039 9.1938 -3.3736 15 6 -1.9031 10.2434 -3.8345 16 6 -3.3857 10.3893 -3.6071 17 7 -1.1448 11.0757 -4.5014 18 7 0.1679 10.5875 -4.4841 19 6 1.3305 11.2181 -5.1141 20 6 1.4748 10.7094 -6.5253 21 1 0.7712 9.9880 -6.9138 22 6 2.5052 11.1648 -7.3202 23 7 2.6314 10.7204 -8.5516 24 14 3.7218 12.4129 -6.6483 25 1 4.8591 11.7020 -6.0109 26 1 4.2271 13.2591 -7.7592 27 1 3.0465 13.2698 -5.6410 28 7 2.3032 2.1694 -1.0841 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8763 5.0936 -0.8849 35 1 3.5563 4.1849 -2.3816 36 1 1.1663 4.8356 -2.2656 37 1 1.4865 5.7445 -0.7690 38 1 3.0878 7.1914 -1.9891 39 1 2.7681 6.2830 -3.4861 40 1 2.1536 8.8781 -3.8723 41 1 -1.4388 8.3465 -2.7936 42 1 -3.9273 9.9001 -4.4167 43 1 -3.6550 9.9260 -2.6578 44 1 -3.6472 11.4471 -3.5822 45 1 1.1931 12.2994 -5.1300 46 1 2.2283 10.9743 -4.5463 47 1 3.3561 11.0411 -9.1110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743870398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:04 Heat of formation + Delta-G solvation = 93.493667 kcal Electronic energy + Delta-G solvation = -29138.227368 eV Core-core repulsion = 24939.894434 eV Total energy + Delta-G solvation = -4198.332934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.86800 -40.96471 -39.37876 -36.70504 -35.92610 -34.81044 -33.78493 -33.54221 -32.19772 -31.75466 -29.69659 -29.10507 -27.75341 -26.34073 -25.43396 -24.15714 -23.05224 -22.42243 -21.27329 -20.97809 -19.77233 -19.34238 -18.35728 -17.72271 -17.24121 -16.98407 -16.45755 -16.20383 -15.69106 -15.15022 -14.94802 -14.74376 -14.37048 -14.34530 -13.92271 -13.88124 -13.39324 -13.17652 -13.10855 -12.85070 -12.73247 -12.63780 -12.42194 -12.22115 -12.16123 -11.96884 -11.91811 -11.84445 -11.66786 -11.57606 -11.27272 -11.17242 -11.11921 -10.86674 -10.51357 -10.25995 -10.18337 -9.98253 -9.79199 -9.57710 -8.89551 -7.98602 -7.51827 -6.36482 -4.41063 0.84816 1.92106 2.17651 2.46267 2.74153 3.02814 3.04069 3.14530 3.15722 3.28814 3.53131 3.65151 3.71432 4.11163 4.34974 4.42611 4.54499 4.69661 4.74166 4.78039 4.87394 4.89723 5.03970 5.07915 5.18220 5.27698 5.30554 5.35412 5.46125 5.52734 5.58862 5.66200 5.73216 5.78185 5.90542 6.00101 6.00571 6.11374 6.19097 6.29035 6.34445 6.61225 6.72223 7.17059 7.41680 7.52054 7.73271 7.88485 8.14050 8.27376 8.54488 8.69926 9.18016 10.75680 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.002116 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.392050 B =13230.054669 C =14777.086805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.033 4.033 3 C 0.171 3.829 4 N -0.387 5.387 5 O 0.077 5.923 6 C 0.189 3.811 7 C -0.030 4.030 8 C -0.102 4.102 9 C -0.135 4.135 10 C 0.519 3.481 11 O -0.514 6.514 12 N -0.641 5.641 13 C 0.304 3.696 14 C -0.293 4.293 15 C 0.054 3.946 16 C -0.063 4.063 17 N -0.283 5.283 18 N -0.344 5.344 19 C 0.230 3.770 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.080 3.920 23 N -0.882 5.882 24 Si 0.872 3.128 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.263 1.263 28 N -0.479 5.479 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.416 0.584 41 H 0.163 0.837 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.035 0.965 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 -15.452 16.943 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.071 4.071 3 C -0.102 4.102 4 N -0.095 5.095 5 O 0.018 5.982 6 C -0.031 4.031 7 C -0.069 4.069 8 C -0.141 4.141 9 C -0.175 4.175 10 C 0.306 3.694 11 O -0.388 6.388 12 N -0.288 5.288 13 C 0.082 3.918 14 C -0.324 4.324 15 C -0.111 4.111 16 C -0.122 4.122 17 N -0.108 5.108 18 N -0.129 5.129 19 C 0.111 3.889 20 C -0.584 4.584 21 H 0.099 0.901 22 C -0.125 4.125 23 N -0.519 5.519 24 Si 0.698 3.302 25 H -0.196 1.196 26 H -0.204 1.204 27 H -0.188 1.188 28 N -0.213 5.213 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.252 0.748 41 H 0.180 0.820 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.053 0.947 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.584 -15.159 16.869 22.735 hybrid contribution 1.453 0.259 0.130 1.482 sum 3.037 -14.900 17.000 22.809 Atomic orbital electron populations 1.21747 0.93149 1.02884 1.02880 1.19939 0.96957 0.85633 1.04613 1.25915 1.00251 1.00540 0.83527 1.74633 1.17939 0.92961 1.23957 1.85292 1.60797 1.27188 1.24880 1.28798 0.95526 0.96683 0.82134 1.20332 0.99498 0.88519 0.98503 1.21337 0.96343 0.94619 1.01806 1.21591 0.96498 0.96213 1.03192 1.20575 0.91080 0.80267 0.77503 1.90655 1.27401 1.70917 1.49876 1.42832 1.10255 1.22515 1.53211 1.17936 0.88812 0.87473 0.97592 1.21282 0.89967 1.05163 1.16025 1.22064 0.96757 0.94151 0.98107 1.20034 0.87934 1.02335 1.01860 1.77368 0.87101 1.22909 1.23407 1.48897 1.07874 1.16093 1.40056 1.19930 0.79513 0.95355 0.94137 1.21191 1.14523 1.27789 0.94871 0.90081 1.24832 0.97200 0.95850 0.94623 1.69876 1.31859 1.42900 1.07249 0.86916 0.81676 0.82081 0.79553 1.19643 1.20363 1.18775 1.71921 1.17975 1.02085 1.29335 0.91793 0.90986 0.92300 0.88564 0.89166 0.87576 0.86730 0.89767 0.90045 0.87841 0.87537 0.74799 0.81990 0.91150 0.91082 0.91503 0.92771 0.94727 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.03 -0.24 6.56 -27.88 -0.18 -0.42 16 3 C 0.17 1.81 7.47 -156.37 -1.17 0.64 16 4 N -0.39 -4.48 12.16 30.90 0.38 -4.11 16 5 O 0.08 0.81 11.31 18.11 0.20 1.01 16 6 C 0.19 1.76 7.77 -13.05 -0.10 1.65 16 7 C -0.03 -0.17 5.84 -27.88 -0.16 -0.33 16 8 C -0.10 -0.80 4.49 -26.73 -0.12 -0.92 16 9 C -0.13 -1.05 5.70 -27.88 -0.16 -1.21 16 10 C 0.52 7.03 7.79 -10.98 -0.09 6.95 16 11 O -0.51 -8.56 13.11 5.55 0.07 -8.49 16 12 N -0.64 -10.08 5.42 -11.46 -0.06 -10.15 16 13 C 0.30 6.10 7.66 -153.16 -1.17 4.93 16 14 C -0.29 -5.81 9.58 -39.78 -0.38 -6.19 16 15 C 0.05 1.07 7.21 -82.44 -0.59 0.48 16 16 C -0.06 -0.92 10.44 36.01 0.38 -0.54 16 17 N -0.28 -6.42 12.57 33.65 0.42 -6.00 16 18 N -0.34 -7.72 3.60 -61.58 -0.22 -7.95 16 19 C 0.23 5.25 5.07 -5.20 -0.03 5.22 16 20 C -0.55 -14.58 9.94 -34.44 -0.34 -14.93 16 21 H 0.08 2.50 8.06 -52.48 -0.42 2.07 16 22 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 23 N -0.88 -25.21 13.96 55.43 0.77 -24.44 16 24 Si 0.87 19.04 27.47 -169.99 -4.67 14.37 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 28 N -0.48 -5.28 11.55 -9.87 -0.11 -5.40 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.42 5.74 7.97 -40.82 -0.33 5.42 16 41 H 0.16 3.13 5.83 -52.48 -0.31 2.82 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.05 1.27 7.20 -51.93 -0.37 0.89 16 46 H 0.04 0.70 6.93 -51.93 -0.36 0.34 16 47 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 400.98 15.07 6.04 6.04 Total: -1.00 -35.43 400.98 -7.89 -43.32 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.87 Total: 5.05 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -3.85 Total: -3.28 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 1.17 Total: -58.03 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.28 Total: -7.48 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.67 Total: 14.37 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.43 -7.89 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743870398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.814 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds