Wall clock time and date at job start Wed Apr 1 2020 04:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47090 * 2 1 4 4 N 1.29946 * 126.28262 * 90.02882 * 3 2 1 5 5 O 1.21300 * 110.24653 * 179.97438 * 4 3 2 6 6 C 1.33639 * 109.81661 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.55487 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47245 * 269.97905 * 7 6 5 9 9 C 1.52999 * 109.46831 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47014 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00157 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00286 * 180.02562 * 10 9 8 13 13 C 1.39470 * 120.00249 * 179.97438 * 12 10 9 14 14 C 1.36110 * 126.21551 * 359.69179 * 13 12 10 15 15 C 1.39757 * 107.83076 * 179.90479 * 14 13 12 16 16 C 1.50702 * 125.84148 * 180.14615 * 15 14 13 17 17 N 1.30854 * 108.32006 * 0.36063 * 15 14 13 18 18 N 1.35259 * 126.21717 * 179.97438 * 13 12 10 19 19 C 1.46492 * 126.04519 * 359.96749 * 18 13 12 20 20 C 1.50703 * 109.47120 * 90.00121 * 19 18 13 21 21 H 1.08003 * 119.99956 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99769 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99389 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00082 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46945 * 90.00364 * 24 22 20 26 26 H 1.48502 * 109.46807 * 209.99830 * 24 22 20 27 27 H 1.48499 * 109.47416 * 330.00072 * 24 22 20 28 28 N 1.31140 * 106.89456 * 359.77589 * 6 5 4 29 29 H 1.09005 * 109.47366 * 59.99142 * 1 2 3 30 30 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 31 31 H 1.09011 * 109.46854 * 299.99717 * 1 2 3 32 32 H 1.08994 * 109.46812 * 240.00616 * 2 1 3 33 33 H 1.08997 * 109.47178 * 120.00239 * 2 1 3 34 34 H 1.08996 * 109.46950 * 29.98168 * 7 6 5 35 35 H 1.09001 * 109.47200 * 149.97819 * 7 6 5 36 36 H 1.08996 * 109.47361 * 300.00011 * 8 7 6 37 37 H 1.08999 * 109.46771 * 60.00540 * 8 7 6 38 38 H 1.09003 * 109.47580 * 300.00042 * 9 8 7 39 39 H 1.08997 * 109.47405 * 60.00583 * 9 8 7 40 40 H 0.96999 * 119.99674 * 0.02562 * 12 10 9 41 41 H 1.08004 * 126.08631 * 0.02562 * 14 13 12 42 42 H 1.08999 * 109.46715 * 270.22925 * 16 15 14 43 43 H 1.08999 * 109.47217 * 30.22990 * 16 15 14 44 44 H 1.08997 * 109.47308 * 150.23258 * 16 15 14 45 45 H 1.09004 * 109.46830 * 209.99348 * 19 18 13 46 46 H 1.08994 * 109.47482 * 329.99383 * 19 18 13 47 47 H 0.97008 * 119.99348 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6781 3.2447 0.7124 6 6 2.7077 3.3277 -0.6211 7 6 3.1300 4.5223 -1.4368 8 6 1.9127 5.4069 -1.7137 9 6 2.3416 6.6201 -2.5414 10 6 1.1428 7.4918 -2.8136 11 8 0.0525 7.1737 -2.3879 12 7 1.2819 8.6243 -3.5309 13 6 0.1723 9.4307 -3.7833 14 6 -1.1039 9.1938 -3.3736 15 6 -1.9031 10.2434 -3.8345 16 6 -3.3857 10.3893 -3.6071 17 7 -1.1448 11.0757 -4.5014 18 7 0.1679 10.5875 -4.4841 19 6 1.3305 11.2181 -5.1141 20 6 1.4748 10.7094 -6.5253 21 1 0.7712 9.9880 -6.9138 22 6 2.5052 11.1648 -7.3202 23 7 2.6314 10.7204 -8.5516 24 14 3.7218 12.4129 -6.6483 25 1 4.8591 11.7020 -6.0109 26 1 4.2271 13.2591 -7.7592 27 1 3.0465 13.2698 -5.6410 28 7 2.3032 2.1694 -1.0841 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8763 5.0936 -0.8849 35 1 3.5563 4.1849 -2.3816 36 1 1.1663 4.8356 -2.2656 37 1 1.4865 5.7445 -0.7690 38 1 3.0878 7.1914 -1.9891 39 1 2.7681 6.2830 -3.4861 40 1 2.1536 8.8781 -3.8723 41 1 -1.4388 8.3465 -2.7936 42 1 -3.9273 9.9001 -4.4167 43 1 -3.6550 9.9260 -2.6578 44 1 -3.6472 11.4471 -3.5822 45 1 1.1931 12.2994 -5.1300 46 1 2.2283 10.9743 -4.5463 47 1 3.3561 11.0411 -9.1110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743870398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:03 Heat of formation + Delta-G solvation = 68.336747 kcal Electronic energy + Delta-G solvation = -29139.318254 eV Core-core repulsion = 24939.894434 eV Total energy + Delta-G solvation = -4199.423820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.63048 -42.42417 -40.61196 -37.42664 -36.62367 -36.20927 -35.51083 -34.22685 -33.96529 -32.47809 -31.17933 -30.31794 -28.84503 -28.00426 -26.10002 -25.05072 -24.31952 -23.67719 -22.30686 -21.71665 -21.19844 -20.65735 -19.24413 -19.14121 -18.57140 -18.35306 -17.68015 -17.08399 -16.67832 -16.42685 -16.07705 -15.79272 -15.64840 -15.23046 -15.12638 -14.86353 -14.70708 -14.34694 -14.15316 -14.02668 -13.88430 -13.75768 -13.56160 -13.47623 -13.13815 -12.95614 -12.82104 -12.72504 -12.59759 -12.51520 -12.31074 -12.24829 -12.10245 -11.97443 -11.84709 -11.75297 -11.68623 -11.45659 -10.93562 -10.89280 -10.85885 -9.60541 -9.05331 -8.40453 -6.53265 0.11720 0.81394 1.16416 1.33641 1.35033 1.43001 1.50510 1.66926 1.84942 2.08005 2.26536 2.27047 2.66118 2.91077 3.03824 3.51509 3.76712 3.79407 4.01937 4.07703 4.15897 4.18081 4.20735 4.27661 4.45122 4.51666 4.57138 4.60736 4.66675 4.71541 4.75117 4.83021 4.86656 4.86999 4.92475 4.94845 4.97082 5.02006 5.14383 5.14829 5.20373 5.21289 5.23280 5.31133 5.88087 6.00303 6.26168 6.37730 6.51301 6.96580 7.07750 7.12305 7.14418 8.75890 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.002116 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.392050 B =13230.054669 C =14777.086805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 C 0.163 3.837 4 N -0.411 5.411 5 O 0.068 5.932 6 C 0.194 3.806 7 C -0.022 4.022 8 C -0.096 4.096 9 C -0.122 4.122 10 C 0.514 3.486 11 O -0.548 6.548 12 N -0.640 5.640 13 C 0.303 3.697 14 C -0.311 4.311 15 C 0.058 3.942 16 C -0.062 4.062 17 N -0.331 5.331 18 N -0.367 5.367 19 C 0.238 3.762 20 C -0.553 4.553 21 H 0.021 0.979 22 C 0.024 3.976 23 N -0.934 5.934 24 Si 0.951 3.049 25 H -0.240 1.240 26 H -0.283 1.283 27 H -0.249 1.249 28 N -0.506 5.506 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.145 0.855 39 H 0.130 0.870 40 H 0.425 0.575 41 H 0.166 0.834 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.049 0.951 46 H 0.072 0.928 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.413 -15.378 18.698 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 C -0.110 4.110 4 N -0.122 5.122 5 O 0.012 5.988 6 C -0.026 4.026 7 C -0.061 4.061 8 C -0.135 4.135 9 C -0.161 4.161 10 C 0.304 3.696 11 O -0.424 6.424 12 N -0.289 5.289 13 C 0.081 3.919 14 C -0.342 4.342 15 C -0.107 4.107 16 C -0.120 4.120 17 N -0.156 5.156 18 N -0.152 5.152 19 C 0.118 3.882 20 C -0.591 4.591 21 H 0.039 0.961 22 C -0.176 4.176 23 N -0.572 5.572 24 Si 0.771 3.229 25 H -0.163 1.163 26 H -0.208 1.208 27 H -0.172 1.172 28 N -0.240 5.240 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.163 0.837 39 H 0.148 0.852 40 H 0.263 0.737 41 H 0.184 0.816 42 H 0.099 0.901 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.769 -15.104 18.644 24.289 hybrid contribution 0.638 0.119 -0.451 0.791 sum 4.407 -14.985 18.193 23.978 Atomic orbital electron populations 1.21718 0.92809 1.04031 1.01631 1.20129 0.97153 0.84214 1.05803 1.26513 0.99616 1.01605 0.83256 1.74614 1.19215 0.93560 1.24770 1.85252 1.61030 1.26958 1.25524 1.29495 0.94102 0.97164 0.81882 1.20531 0.99008 0.87204 0.99345 1.21216 0.96732 0.94686 1.00885 1.21699 0.94361 0.95144 1.04888 1.21783 0.92440 0.79566 0.75806 1.90635 1.29424 1.71396 1.50957 1.43106 1.09491 1.22641 1.53626 1.18360 0.90419 0.86962 0.96180 1.21485 0.90316 1.05567 1.16872 1.22878 0.98707 0.93082 0.96052 1.20222 0.84706 1.03530 1.03543 1.77298 0.87791 1.24882 1.25617 1.48829 1.07801 1.17268 1.41318 1.19762 0.81225 0.94876 0.92293 1.21204 1.13557 1.27006 0.97312 0.96108 1.25847 0.99315 0.97948 0.94540 1.70043 1.33164 1.44852 1.09166 0.85686 0.79229 0.78938 0.79011 1.16331 1.20817 1.17250 1.71940 1.19113 1.03086 1.29899 0.93183 0.88645 0.93311 0.87450 0.87839 0.83940 0.84948 0.92416 0.91117 0.83676 0.85183 0.73696 0.81631 0.90061 0.88590 0.90469 0.93265 0.91083 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.89 71.98 0.71 -1.13 16 2 C -0.03 -0.47 6.56 29.85 0.20 -0.28 16 3 C 0.16 3.39 7.47 138.47 1.03 4.43 16 4 N -0.41 -9.43 12.16 -60.33 -0.73 -10.16 16 5 O 0.07 1.39 11.31 74.87 0.85 2.24 16 6 C 0.19 3.34 7.77 88.38 0.69 4.02 16 7 C -0.02 -0.19 5.84 29.85 0.17 -0.02 16 8 C -0.10 -1.31 4.49 30.59 0.14 -1.17 16 9 C -0.12 -1.49 5.70 29.85 0.17 -1.32 16 10 C 0.51 13.19 7.79 87.66 0.68 13.87 16 11 O -0.55 -18.11 13.11 -3.06 -0.04 -18.15 16 12 N -0.64 -19.38 5.42 -308.56 -1.67 -21.05 16 13 C 0.30 12.20 7.66 131.32 1.01 13.21 16 14 C -0.31 -12.43 9.58 22.14 0.21 -12.22 16 15 C 0.06 2.30 7.21 43.07 0.31 2.61 16 16 C -0.06 -1.73 10.44 71.24 0.74 -0.99 16 17 N -0.33 -15.32 12.57 -47.44 -0.60 -15.92 16 18 N -0.37 -16.64 3.60 -348.73 -1.26 -17.90 16 19 C 0.24 10.77 5.07 85.64 0.43 11.20 16 20 C -0.55 -30.30 9.94 25.60 0.25 -30.05 16 21 H 0.02 1.35 8.06 -2.91 -0.02 1.33 16 22 C 0.02 1.27 5.47 84.66 0.46 1.73 16 23 N -0.93 -54.61 13.96 21.45 0.30 -54.31 16 24 Si 0.95 38.11 27.47 68.60 1.88 40.00 16 25 H -0.24 -8.43 7.11 99.48 0.71 -7.73 16 26 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.25 -9.35 6.54 99.48 0.65 -8.70 16 28 N -0.51 -10.84 11.55 -303.21 -3.50 -14.34 16 29 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 37 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 38 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.42 10.87 7.97 -92.71 -0.74 10.13 16 41 H 0.17 6.46 5.83 -2.91 -0.02 6.44 16 42 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.05 2.26 7.20 -2.38 -0.02 2.25 16 46 H 0.07 2.67 6.93 -2.39 -0.02 2.66 16 47 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 Total: -1.00 -83.18 400.98 2.66 -80.53 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.21 Total: 25.16 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 7.22 Total: 3.91 kcal Atomic # 7 Polarization: -126.22 SS G_CDS: -7.46 Total: -133.68 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.81 Total: -15.91 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 1.88 Total: 40.00 kcal Total: -83.18 2.66 -80.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743870398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.863 kcal (2) G-P(sol) polarization free energy of solvation -83.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds