Wall clock time and date at job start Wed Apr 1 2020 04:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.50705 * 110.53221 * 182.87045 * 3 2 1 5 5 C 1.39862 * 126.04390 * 332.15502 * 4 3 2 6 6 N 1.30835 * 108.20663 * 179.97438 * 5 4 3 7 7 N 1.40086 * 108.20330 * 359.97438 * 6 5 4 8 8 C 1.46500 * 126.03733 * 179.97438 * 7 6 5 9 9 C 1.34945 * 107.92635 * 359.76380 * 7 6 5 10 10 N 1.47313 * 110.60302 * 305.70213 * 3 2 1 11 11 C 1.34522 * 106.62012 * 118.52681 * 10 3 2 12 12 O 1.21537 * 123.77065 * 180.02562 * 11 10 3 13 13 N 1.33794 * 112.45973 * 0.02562 * 11 10 3 14 14 C 1.46504 * 124.17682 * 179.97438 * 13 11 10 15 15 N 1.46495 * 109.46775 * 90.02636 * 14 13 11 16 16 C 1.36941 * 119.99822 * 90.00232 * 15 14 13 17 17 H 1.08001 * 120.00026 * 216.31257 * 16 15 14 18 18 C 1.38813 * 120.00594 * 36.31157 * 16 15 14 19 19 N 1.31619 * 119.99400 * 21.20061 * 18 16 15 20 20 Si 1.86797 * 120.00476 * 201.20943 * 18 16 15 21 21 H 1.48497 * 109.47225 * 89.99372 * 20 18 16 22 22 H 1.48500 * 109.46886 * 209.99912 * 20 18 16 23 23 H 1.48505 * 109.46733 * 329.99448 * 20 18 16 24 24 C 1.46498 * 120.00419 * 269.99776 * 15 14 13 25 25 C 1.53001 * 117.50286 * 194.41991 * 24 15 14 26 26 C 1.52995 * 117.50152 * 125.79110 * 24 15 14 27 27 C 1.34766 * 111.64132 * 0.23032 * 13 11 10 28 28 O 1.21237 * 127.15753 * 179.72986 * 27 13 11 29 29 H 1.09002 * 109.47086 * 299.99645 * 1 2 3 30 30 H 1.09002 * 109.46846 * 59.99903 * 1 2 3 31 31 H 1.08993 * 109.47019 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47086 * 240.00355 * 2 1 3 33 33 H 1.09001 * 109.47314 * 119.99856 * 2 1 3 34 34 H 1.08005 * 125.89351 * 359.95272 * 5 4 3 35 35 H 1.08998 * 109.46723 * 90.02948 * 8 7 6 36 36 H 1.08995 * 109.47518 * 210.03142 * 8 7 6 37 37 H 1.09002 * 109.46892 * 330.03185 * 8 7 6 38 38 H 1.08003 * 126.12995 * 180.23413 * 9 7 6 39 39 H 0.97001 * 126.68806 * 298.49268 * 10 3 2 40 40 H 1.08997 * 109.46946 * 210.02410 * 14 13 11 41 41 H 1.08998 * 109.46867 * 330.02546 * 14 13 11 42 42 H 0.97001 * 120.00051 * 174.74325 * 19 18 16 43 43 H 1.09001 * 115.54726 * 340.12498 * 24 15 14 44 44 H 1.09002 * 117.49754 * 359.97438 * 25 24 15 45 45 H 1.08997 * 117.49897 * 145.02156 * 25 24 15 46 46 H 1.08994 * 117.50327 * 214.97821 * 26 24 15 47 47 H 1.08997 * 117.50037 * 0.02562 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5451 1.4711 -0.0707 5 6 4.4101 0.4782 0.4007 6 7 5.6386 0.8590 0.1611 7 7 5.5942 2.1079 -0.4719 8 6 6.7503 2.8921 -0.9133 9 6 4.2983 2.4589 -0.6076 10 7 1.4541 2.1995 -1.1198 11 6 0.7452 3.2048 -0.5754 12 8 0.1284 4.0259 -1.2255 13 7 0.7950 3.2000 0.7616 14 6 0.1163 4.1793 1.6140 15 7 -1.2284 3.6963 1.9373 16 6 -1.4300 2.9275 3.0524 17 1 -2.1519 2.1244 3.0314 18 6 -0.7067 3.1801 4.2099 19 7 -0.1567 4.3611 4.3975 20 14 -0.5135 1.8441 5.5011 21 1 0.7051 1.0471 5.2102 22 1 -0.3889 2.4673 6.8433 23 1 -1.7035 0.9561 5.4762 24 6 -2.3575 4.0359 1.0679 25 6 -3.7667 3.8024 1.6162 26 6 -3.2064 2.8826 0.5294 27 6 1.5512 2.1862 1.2271 28 8 1.7893 1.9226 2.3862 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.1148 -0.4434 0.8801 35 1 7.0026 2.6216 -1.9386 36 1 6.5083 3.9538 -0.8667 37 1 7.6000 2.6841 -0.2630 38 1 3.9285 3.3669 -1.0607 39 1 1.5594 2.0101 -2.0653 40 1 0.6844 4.3156 2.5342 41 1 0.0438 5.1309 1.0874 42 1 0.2833 4.5632 5.2380 43 1 -2.2069 4.8968 0.4165 44 1 -3.8537 3.3957 2.6237 45 1 -4.5434 4.5097 1.3256 46 1 -3.6146 2.9848 -0.4760 47 1 -2.9251 1.8711 0.8223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755733128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:31 Heat of formation + Delta-G solvation = 99.412750 kcal Electronic energy + Delta-G solvation = -33056.603065 eV Core-core repulsion = 28858.526801 eV Total energy + Delta-G solvation = -4198.076263 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13794 -40.91165 -37.77044 -37.11829 -36.01977 -34.59450 -33.42195 -32.91696 -31.85478 -30.45060 -30.08705 -27.73486 -26.15951 -25.27684 -23.75357 -22.90230 -21.67106 -21.35520 -20.87724 -20.50186 -19.92052 -19.44182 -17.57746 -17.14139 -16.60797 -15.97620 -15.59927 -15.48451 -15.36877 -14.99154 -14.52066 -14.44172 -14.36408 -13.97743 -13.75553 -13.73395 -13.60371 -13.06780 -12.91914 -12.82605 -12.73104 -12.64748 -11.88708 -11.56890 -11.31782 -11.22901 -10.98906 -10.94246 -10.90118 -10.80432 -10.57991 -10.54149 -10.15729 -10.04778 -9.74254 -9.55555 -9.51169 -9.40217 -9.15619 -8.80630 -8.49199 -8.42246 -6.73105 -5.97963 -3.50516 1.73641 2.30647 2.45544 2.60922 3.11873 3.39175 3.45299 3.53126 3.69535 3.85959 4.27736 4.43204 4.64730 4.69385 4.82671 4.90833 4.98056 4.99946 5.12919 5.17220 5.22195 5.36086 5.42318 5.51525 5.63753 5.74796 5.90057 5.94759 5.98655 6.06643 6.10721 6.19730 6.24692 6.41246 6.49359 6.49769 6.55384 6.62503 6.77401 6.82325 6.98518 7.17301 7.19518 7.24123 7.56107 7.75781 7.93628 8.27768 8.37910 8.85468 9.00795 9.64374 10.17047 11.08547 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011811 B = 0.004727 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.175785 B = 5921.591168 C = 6811.691003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C 0.200 3.800 4 C -0.236 4.236 5 C 0.076 3.924 6 N -0.297 5.297 7 N -0.376 5.376 8 C 0.102 3.898 9 C 0.080 3.920 10 N -0.731 5.731 11 C 0.701 3.299 12 O -0.559 6.559 13 N -0.574 5.574 14 C 0.347 3.653 15 N -0.529 5.529 16 C -0.278 4.278 17 H 0.064 0.936 18 C 0.039 3.961 19 N -0.887 5.887 20 Si 0.902 3.098 21 H -0.273 1.273 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.124 3.876 25 C -0.192 4.192 26 C -0.219 4.219 27 C 0.535 3.465 28 O -0.449 6.449 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.187 0.813 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.173 0.827 39 H 0.426 0.574 40 H 0.137 0.863 41 H 0.065 0.935 42 H 0.261 0.739 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.460 -4.711 -12.219 16.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C 0.107 3.893 4 C -0.249 4.249 5 C -0.111 4.111 6 N -0.118 5.118 7 N -0.157 5.157 8 C -0.039 4.039 9 C -0.067 4.067 10 N -0.395 5.395 11 C 0.402 3.598 12 O -0.434 6.434 13 N -0.324 5.324 14 C 0.141 3.859 15 N -0.245 5.245 16 C -0.406 4.406 17 H 0.082 0.918 18 C -0.163 4.163 19 N -0.527 5.527 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.016 3.984 25 C -0.230 4.230 26 C -0.260 4.260 27 C 0.319 3.681 28 O -0.316 6.316 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.203 0.797 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.190 0.810 39 H 0.269 0.731 40 H 0.154 0.846 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.720 -4.408 -11.547 16.361 hybrid contribution -0.798 -0.571 0.055 0.983 sum 9.922 -4.979 -11.492 15.979 Atomic orbital electron populations 1.21809 0.94288 1.02020 1.03343 1.21648 0.97226 0.92377 1.03428 1.19537 0.88810 0.94336 0.86645 1.19653 0.93903 0.98216 1.13159 1.23730 0.89184 0.99667 0.98545 1.77378 1.21611 0.95737 1.17056 1.48436 1.05400 1.15812 1.46075 1.21866 0.86749 0.94546 1.00751 1.22228 0.83940 0.99972 1.00603 1.45762 1.54351 1.31035 1.08338 1.16312 0.79114 0.81491 0.82898 1.90911 1.46598 1.41359 1.64526 1.48853 1.46111 1.30615 1.06869 1.21776 0.84682 0.85638 0.93799 1.43859 1.00016 1.57132 1.23466 1.18886 1.23603 1.09382 0.88772 0.91795 1.25087 0.98610 0.95555 0.97021 1.69743 1.38869 1.19167 1.24960 0.86321 0.78861 0.81825 0.79922 1.19866 1.21753 1.20442 1.21224 0.85660 0.95567 0.95967 1.23075 0.97694 1.03175 0.99088 1.23252 1.08407 0.97574 0.96722 1.20474 0.77642 0.80682 0.89319 1.90783 1.55870 1.66957 1.18023 0.91402 0.92365 0.92285 0.90519 0.89804 0.79665 0.90735 0.89404 0.89198 0.80976 0.73115 0.84648 0.91696 0.92844 0.88824 0.88220 0.90675 0.90884 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.38 37.16 0.35 -1.92 16 2 C -0.11 -1.38 4.78 -26.73 -0.13 -1.51 16 3 C 0.20 2.92 1.05 -133.24 -0.14 2.78 16 4 C -0.24 -3.19 5.02 -105.05 -0.53 -3.72 16 5 C 0.08 1.00 11.19 -17.37 -0.19 0.80 16 6 N -0.30 -4.07 12.58 30.62 0.39 -3.68 16 7 N -0.38 -4.39 4.01 -68.16 -0.27 -4.66 16 8 C 0.10 0.72 11.47 59.85 0.69 1.41 16 9 C 0.08 0.97 10.96 -17.22 -0.19 0.78 16 10 N -0.73 -10.12 4.61 -54.02 -0.25 -10.37 16 11 C 0.70 12.80 8.52 -88.02 -0.75 12.05 16 12 O -0.56 -11.58 17.48 5.33 0.09 -11.49 16 13 N -0.57 -11.65 2.84 -124.23 -0.35 -12.00 16 14 C 0.35 8.09 5.90 -63.75 -0.38 7.72 16 15 N -0.53 -12.79 3.04 -169.35 -0.51 -13.31 16 16 C -0.28 -7.28 8.09 -15.06 -0.12 -7.40 16 17 H 0.06 1.72 7.14 -52.49 -0.37 1.34 16 18 C 0.04 1.06 4.97 -17.43 -0.09 0.97 16 19 N -0.89 -24.58 11.36 55.49 0.63 -23.95 16 20 Si 0.90 22.04 29.61 -169.99 -5.03 17.01 16 21 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.12 2.72 6.62 -67.93 -0.45 2.27 16 25 C -0.19 -3.86 9.80 -26.73 -0.26 -4.13 16 26 C -0.22 -4.34 10.07 -26.73 -0.27 -4.61 16 27 C 0.54 10.57 5.80 -10.56 -0.06 10.51 16 28 O -0.45 -10.54 17.75 5.59 0.10 -10.44 16 29 H 0.07 1.25 7.29 -51.93 -0.38 0.87 16 30 H 0.06 0.84 7.52 -51.93 -0.39 0.45 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.07 7.54 -51.93 -0.39 0.68 16 34 H 0.19 2.04 7.49 -52.48 -0.39 1.65 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.17 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.43 4.68 8.96 -40.82 -0.37 4.32 16 40 H 0.14 3.56 5.27 -51.93 -0.27 3.28 16 41 H 0.06 1.48 7.76 -51.93 -0.40 1.07 16 42 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 43 H 0.09 2.02 8.10 -51.93 -0.42 1.60 16 44 H 0.10 2.19 6.93 -51.93 -0.36 1.83 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 47 H 0.08 1.73 7.98 -51.93 -0.41 1.31 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -32.71 393.57 -8.49 -41.20 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.68 Total: 9.75 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: -2.52 Total: 16.01 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -0.37 Total: -67.97 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.19 Total: -21.93 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.71 -8.49 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755733128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.612 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds