Wall clock time and date at job start Wed Apr 1 2020 04:30:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53001 * 109.46901 * 2 1
4 4 C 1.50705 * 110.53221 * 182.87045 * 3 2 1
5 5 C 1.39862 * 126.04390 * 332.15502 * 4 3 2
6 6 N 1.30835 * 108.20663 * 179.97438 * 5 4 3
7 7 N 1.40086 * 108.20330 * 359.97438 * 6 5 4
8 8 C 1.46500 * 126.03733 * 179.97438 * 7 6 5
9 9 C 1.34945 * 107.92635 * 359.76380 * 7 6 5
10 10 N 1.47313 * 110.60302 * 305.70213 * 3 2 1
11 11 C 1.34522 * 106.62012 * 118.52681 * 10 3 2
12 12 O 1.21537 * 123.77065 * 180.02562 * 11 10 3
13 13 N 1.33794 * 112.45973 * 0.02562 * 11 10 3
14 14 C 1.46504 * 124.17682 * 179.97438 * 13 11 10
15 15 N 1.46495 * 109.46775 * 90.02636 * 14 13 11
16 16 C 1.36941 * 119.99822 * 90.00232 * 15 14 13
17 17 H 1.08001 * 120.00026 * 216.31257 * 16 15 14
18 18 C 1.38813 * 120.00594 * 36.31157 * 16 15 14
19 19 N 1.31619 * 119.99400 * 21.20061 * 18 16 15
20 20 Si 1.86797 * 120.00476 * 201.20943 * 18 16 15
21 21 H 1.48497 * 109.47225 * 89.99372 * 20 18 16
22 22 H 1.48500 * 109.46886 * 209.99912 * 20 18 16
23 23 H 1.48505 * 109.46733 * 329.99448 * 20 18 16
24 24 C 1.46498 * 120.00419 * 269.99776 * 15 14 13
25 25 C 1.53001 * 117.50286 * 194.41991 * 24 15 14
26 26 C 1.52995 * 117.50152 * 125.79110 * 24 15 14
27 27 C 1.34766 * 111.64132 * 0.23032 * 13 11 10
28 28 O 1.21237 * 127.15753 * 179.72986 * 27 13 11
29 29 H 1.09002 * 109.47086 * 299.99645 * 1 2 3
30 30 H 1.09002 * 109.46846 * 59.99903 * 1 2 3
31 31 H 1.08993 * 109.47019 * 179.97438 * 1 2 3
32 32 H 1.09002 * 109.47086 * 240.00355 * 2 1 3
33 33 H 1.09001 * 109.47314 * 119.99856 * 2 1 3
34 34 H 1.08005 * 125.89351 * 359.95272 * 5 4 3
35 35 H 1.08998 * 109.46723 * 90.02948 * 8 7 6
36 36 H 1.08995 * 109.47518 * 210.03142 * 8 7 6
37 37 H 1.09002 * 109.46892 * 330.03185 * 8 7 6
38 38 H 1.08003 * 126.12995 * 180.23413 * 9 7 6
39 39 H 0.97001 * 126.68806 * 298.49268 * 10 3 2
40 40 H 1.08997 * 109.46946 * 210.02410 * 14 13 11
41 41 H 1.08998 * 109.46867 * 330.02546 * 14 13 11
42 42 H 0.97001 * 120.00051 * 174.74325 * 19 18 16
43 43 H 1.09001 * 115.54726 * 340.12498 * 24 15 14
44 44 H 1.09002 * 117.49754 * 359.97438 * 25 24 15
45 45 H 1.08997 * 117.49897 * 145.02156 * 25 24 15
46 46 H 1.08994 * 117.50327 * 214.97821 * 26 24 15
47 47 H 1.08997 * 117.50037 * 0.02562 * 26 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5451 1.4711 -0.0707
5 6 4.4101 0.4782 0.4007
6 7 5.6386 0.8590 0.1611
7 7 5.5942 2.1079 -0.4719
8 6 6.7503 2.8921 -0.9133
9 6 4.2983 2.4589 -0.6076
10 7 1.4541 2.1995 -1.1198
11 6 0.7452 3.2048 -0.5754
12 8 0.1284 4.0259 -1.2255
13 7 0.7950 3.2000 0.7616
14 6 0.1163 4.1793 1.6140
15 7 -1.2284 3.6963 1.9373
16 6 -1.4300 2.9275 3.0524
17 1 -2.1519 2.1244 3.0314
18 6 -0.7067 3.1801 4.2099
19 7 -0.1567 4.3611 4.3975
20 14 -0.5135 1.8441 5.5011
21 1 0.7051 1.0471 5.2102
22 1 -0.3889 2.4673 6.8433
23 1 -1.7035 0.9561 5.4762
24 6 -2.3575 4.0359 1.0679
25 6 -3.7667 3.8024 1.6162
26 6 -3.2064 2.8826 0.5294
27 6 1.5512 2.1862 1.2271
28 8 1.7893 1.9226 2.3862
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 4.1148 -0.4434 0.8801
35 1 7.0026 2.6216 -1.9386
36 1 6.5083 3.9538 -0.8667
37 1 7.6000 2.6841 -0.2630
38 1 3.9285 3.3669 -1.0607
39 1 1.5594 2.0101 -2.0653
40 1 0.6844 4.3156 2.5342
41 1 0.0438 5.1309 1.0874
42 1 0.2833 4.5632 5.2380
43 1 -2.2069 4.8968 0.4165
44 1 -3.8537 3.3957 2.6237
45 1 -4.5434 4.5097 1.3256
46 1 -3.6146 2.9848 -0.4760
47 1 -2.9251 1.8711 0.8223
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000755733128.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:31
Heat of formation + Delta-G solvation = 99.412750 kcal
Electronic energy + Delta-G solvation = -33056.603065 eV
Core-core repulsion = 28858.526801 eV
Total energy + Delta-G solvation = -4198.076263 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-42.13794 -40.91165 -37.77044 -37.11829 -36.01977 -34.59450 -33.42195 -32.91696
-31.85478 -30.45060 -30.08705 -27.73486 -26.15951 -25.27684 -23.75357 -22.90230
-21.67106 -21.35520 -20.87724 -20.50186 -19.92052 -19.44182 -17.57746 -17.14139
-16.60797 -15.97620 -15.59927 -15.48451 -15.36877 -14.99154 -14.52066 -14.44172
-14.36408 -13.97743 -13.75553 -13.73395 -13.60371 -13.06780 -12.91914 -12.82605
-12.73104 -12.64748 -11.88708 -11.56890 -11.31782 -11.22901 -10.98906 -10.94246
-10.90118 -10.80432 -10.57991 -10.54149 -10.15729 -10.04778 -9.74254 -9.55555
-9.51169 -9.40217 -9.15619 -8.80630 -8.49199 -8.42246 -6.73105 -5.97963
-3.50516 1.73641 2.30647 2.45544 2.60922 3.11873 3.39175 3.45299
3.53126 3.69535 3.85959 4.27736 4.43204 4.64730 4.69385 4.82671
4.90833 4.98056 4.99946 5.12919 5.17220 5.22195 5.36086 5.42318
5.51525 5.63753 5.74796 5.90057 5.94759 5.98655 6.06643 6.10721
6.19730 6.24692 6.41246 6.49359 6.49769 6.55384 6.62503 6.77401
6.82325 6.98518 7.17301 7.19518 7.24123 7.56107 7.75781 7.93628
8.27768 8.37910 8.85468 9.00795 9.64374 10.17047 11.08547
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.011811 B = 0.004727 C = 0.004110
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2370.175785 B = 5921.591168 C = 6811.691003
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.108 4.108
3 C 0.200 3.800
4 C -0.236 4.236
5 C 0.076 3.924
6 N -0.297 5.297
7 N -0.376 5.376
8 C 0.102 3.898
9 C 0.080 3.920
10 N -0.731 5.731
11 C 0.701 3.299
12 O -0.559 6.559
13 N -0.574 5.574
14 C 0.347 3.653
15 N -0.529 5.529
16 C -0.278 4.278
17 H 0.064 0.936
18 C 0.039 3.961
19 N -0.887 5.887
20 Si 0.902 3.098
21 H -0.273 1.273
22 H -0.291 1.291
23 H -0.279 1.279
24 C 0.124 3.876
25 C -0.192 4.192
26 C -0.219 4.219
27 C 0.535 3.465
28 O -0.449 6.449
29 H 0.067 0.933
30 H 0.057 0.943
31 H 0.058 0.942
32 H 0.076 0.924
33 H 0.083 0.917
34 H 0.187 0.813
35 H 0.074 0.926
36 H 0.087 0.913
37 H 0.089 0.911
38 H 0.173 0.827
39 H 0.426 0.574
40 H 0.137 0.863
41 H 0.065 0.935
42 H 0.261 0.739
43 H 0.094 0.906
44 H 0.099 0.901
45 H 0.075 0.925
46 H 0.073 0.927
47 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.460 -4.711 -12.219 16.155
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.147 4.147
3 C 0.107 3.893
4 C -0.249 4.249
5 C -0.111 4.111
6 N -0.118 5.118
7 N -0.157 5.157
8 C -0.039 4.039
9 C -0.067 4.067
10 N -0.395 5.395
11 C 0.402 3.598
12 O -0.434 6.434
13 N -0.324 5.324
14 C 0.141 3.859
15 N -0.245 5.245
16 C -0.406 4.406
17 H 0.082 0.918
18 C -0.163 4.163
19 N -0.527 5.527
20 Si 0.731 3.269
21 H -0.199 1.199
22 H -0.218 1.218
23 H -0.204 1.204
24 C 0.016 3.984
25 C -0.230 4.230
26 C -0.260 4.260
27 C 0.319 3.681
28 O -0.316 6.316
29 H 0.086 0.914
30 H 0.076 0.924
31 H 0.077 0.923
32 H 0.095 0.905
33 H 0.102 0.898
34 H 0.203 0.797
35 H 0.093 0.907
36 H 0.106 0.894
37 H 0.108 0.892
38 H 0.190 0.810
39 H 0.269 0.731
40 H 0.154 0.846
41 H 0.083 0.917
42 H 0.072 0.928
43 H 0.112 0.888
44 H 0.118 0.882
45 H 0.093 0.907
46 H 0.091 0.909
47 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 10.720 -4.408 -11.547 16.361
hybrid contribution -0.798 -0.571 0.055 0.983
sum 9.922 -4.979 -11.492 15.979
Atomic orbital electron populations
1.21809 0.94288 1.02020 1.03343 1.21648 0.97226 0.92377 1.03428
1.19537 0.88810 0.94336 0.86645 1.19653 0.93903 0.98216 1.13159
1.23730 0.89184 0.99667 0.98545 1.77378 1.21611 0.95737 1.17056
1.48436 1.05400 1.15812 1.46075 1.21866 0.86749 0.94546 1.00751
1.22228 0.83940 0.99972 1.00603 1.45762 1.54351 1.31035 1.08338
1.16312 0.79114 0.81491 0.82898 1.90911 1.46598 1.41359 1.64526
1.48853 1.46111 1.30615 1.06869 1.21776 0.84682 0.85638 0.93799
1.43859 1.00016 1.57132 1.23466 1.18886 1.23603 1.09382 0.88772
0.91795 1.25087 0.98610 0.95555 0.97021 1.69743 1.38869 1.19167
1.24960 0.86321 0.78861 0.81825 0.79922 1.19866 1.21753 1.20442
1.21224 0.85660 0.95567 0.95967 1.23075 0.97694 1.03175 0.99088
1.23252 1.08407 0.97574 0.96722 1.20474 0.77642 0.80682 0.89319
1.90783 1.55870 1.66957 1.18023 0.91402 0.92365 0.92285 0.90519
0.89804 0.79665 0.90735 0.89404 0.89198 0.80976 0.73115 0.84648
0.91696 0.92844 0.88824 0.88220 0.90675 0.90884 0.89952
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.27 9.38 37.16 0.35 -1.92 16
2 C -0.11 -1.38 4.78 -26.73 -0.13 -1.51 16
3 C 0.20 2.92 1.05 -133.24 -0.14 2.78 16
4 C -0.24 -3.19 5.02 -105.05 -0.53 -3.72 16
5 C 0.08 1.00 11.19 -17.37 -0.19 0.80 16
6 N -0.30 -4.07 12.58 30.62 0.39 -3.68 16
7 N -0.38 -4.39 4.01 -68.16 -0.27 -4.66 16
8 C 0.10 0.72 11.47 59.85 0.69 1.41 16
9 C 0.08 0.97 10.96 -17.22 -0.19 0.78 16
10 N -0.73 -10.12 4.61 -54.02 -0.25 -10.37 16
11 C 0.70 12.80 8.52 -88.02 -0.75 12.05 16
12 O -0.56 -11.58 17.48 5.33 0.09 -11.49 16
13 N -0.57 -11.65 2.84 -124.23 -0.35 -12.00 16
14 C 0.35 8.09 5.90 -63.75 -0.38 7.72 16
15 N -0.53 -12.79 3.04 -169.35 -0.51 -13.31 16
16 C -0.28 -7.28 8.09 -15.06 -0.12 -7.40 16
17 H 0.06 1.72 7.14 -52.49 -0.37 1.34 16
18 C 0.04 1.06 4.97 -17.43 -0.09 0.97 16
19 N -0.89 -24.58 11.36 55.49 0.63 -23.95 16
20 Si 0.90 22.04 29.61 -169.99 -5.03 17.01 16
21 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16
22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
24 C 0.12 2.72 6.62 -67.93 -0.45 2.27 16
25 C -0.19 -3.86 9.80 -26.73 -0.26 -4.13 16
26 C -0.22 -4.34 10.07 -26.73 -0.27 -4.61 16
27 C 0.54 10.57 5.80 -10.56 -0.06 10.51 16
28 O -0.45 -10.54 17.75 5.59 0.10 -10.44 16
29 H 0.07 1.25 7.29 -51.93 -0.38 0.87 16
30 H 0.06 0.84 7.52 -51.93 -0.39 0.45 16
31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16
33 H 0.08 1.07 7.54 -51.93 -0.39 0.68 16
34 H 0.19 2.04 7.49 -52.48 -0.39 1.65 16
35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16
37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16
38 H 0.17 1.81 8.06 -52.48 -0.42 1.39 16
39 H 0.43 4.68 8.96 -40.82 -0.37 4.32 16
40 H 0.14 3.56 5.27 -51.93 -0.27 3.28 16
41 H 0.06 1.48 7.76 -51.93 -0.40 1.07 16
42 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16
43 H 0.09 2.02 8.10 -51.93 -0.42 1.60 16
44 H 0.10 2.19 6.93 -51.93 -0.36 1.83 16
45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16
46 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16
47 H 0.08 1.73 7.98 -51.93 -0.41 1.31 16
LS Contribution 393.57 15.07 5.93 5.93
Total: -1.00 -32.71 393.57 -8.49 -41.20
By element:
Atomic # 1 Polarization: 16.43 SS G_CDS: -6.68 Total: 9.75 kcal
Atomic # 6 Polarization: 18.53 SS G_CDS: -2.52 Total: 16.01 kcal
Atomic # 7 Polarization: -67.59 SS G_CDS: -0.37 Total: -67.97 kcal
Atomic # 8 Polarization: -22.12 SS G_CDS: 0.19 Total: -21.93 kcal
Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -32.71 -8.49 -41.20 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000755733128.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 140.612 kcal
(2) G-P(sol) polarization free energy of solvation -32.713 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.899 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal
(6) G-S(sol) free energy of system = (1) + (5) 99.413 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds