Wall clock time and date at job start Wed Apr 1 2020 04:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.50705 * 110.53221 * 182.87045 * 3 2 1 5 5 C 1.39862 * 126.04390 * 332.15502 * 4 3 2 6 6 N 1.30835 * 108.20663 * 179.97438 * 5 4 3 7 7 N 1.40086 * 108.20330 * 359.97438 * 6 5 4 8 8 C 1.46500 * 126.03733 * 179.97438 * 7 6 5 9 9 C 1.34945 * 107.92635 * 359.76380 * 7 6 5 10 10 N 1.47313 * 110.60302 * 305.70213 * 3 2 1 11 11 C 1.34522 * 106.62012 * 118.52681 * 10 3 2 12 12 O 1.21537 * 123.77065 * 180.02562 * 11 10 3 13 13 N 1.33794 * 112.45973 * 0.02562 * 11 10 3 14 14 C 1.46504 * 124.17682 * 179.97438 * 13 11 10 15 15 N 1.46495 * 109.46775 * 90.02636 * 14 13 11 16 16 C 1.36941 * 119.99822 * 90.00232 * 15 14 13 17 17 H 1.08001 * 120.00026 * 216.31257 * 16 15 14 18 18 C 1.38813 * 120.00594 * 36.31157 * 16 15 14 19 19 N 1.31619 * 119.99400 * 21.20061 * 18 16 15 20 20 Si 1.86797 * 120.00476 * 201.20943 * 18 16 15 21 21 H 1.48497 * 109.47225 * 89.99372 * 20 18 16 22 22 H 1.48500 * 109.46886 * 209.99912 * 20 18 16 23 23 H 1.48505 * 109.46733 * 329.99448 * 20 18 16 24 24 C 1.46498 * 120.00419 * 269.99776 * 15 14 13 25 25 C 1.53001 * 117.50286 * 194.41991 * 24 15 14 26 26 C 1.52995 * 117.50152 * 125.79110 * 24 15 14 27 27 C 1.34766 * 111.64132 * 0.23032 * 13 11 10 28 28 O 1.21237 * 127.15753 * 179.72986 * 27 13 11 29 29 H 1.09002 * 109.47086 * 299.99645 * 1 2 3 30 30 H 1.09002 * 109.46846 * 59.99903 * 1 2 3 31 31 H 1.08993 * 109.47019 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47086 * 240.00355 * 2 1 3 33 33 H 1.09001 * 109.47314 * 119.99856 * 2 1 3 34 34 H 1.08005 * 125.89351 * 359.95272 * 5 4 3 35 35 H 1.08998 * 109.46723 * 90.02948 * 8 7 6 36 36 H 1.08995 * 109.47518 * 210.03142 * 8 7 6 37 37 H 1.09002 * 109.46892 * 330.03185 * 8 7 6 38 38 H 1.08003 * 126.12995 * 180.23413 * 9 7 6 39 39 H 0.97001 * 126.68806 * 298.49268 * 10 3 2 40 40 H 1.08997 * 109.46946 * 210.02410 * 14 13 11 41 41 H 1.08998 * 109.46867 * 330.02546 * 14 13 11 42 42 H 0.97001 * 120.00051 * 174.74325 * 19 18 16 43 43 H 1.09001 * 115.54726 * 340.12498 * 24 15 14 44 44 H 1.09002 * 117.49754 * 359.97438 * 25 24 15 45 45 H 1.08997 * 117.49897 * 145.02156 * 25 24 15 46 46 H 1.08994 * 117.50327 * 214.97821 * 26 24 15 47 47 H 1.08997 * 117.50037 * 0.02562 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5451 1.4711 -0.0707 5 6 4.4101 0.4782 0.4007 6 7 5.6386 0.8590 0.1611 7 7 5.5942 2.1079 -0.4719 8 6 6.7503 2.8921 -0.9133 9 6 4.2983 2.4589 -0.6076 10 7 1.4541 2.1995 -1.1198 11 6 0.7452 3.2048 -0.5754 12 8 0.1284 4.0259 -1.2255 13 7 0.7950 3.2000 0.7616 14 6 0.1163 4.1793 1.6140 15 7 -1.2284 3.6963 1.9373 16 6 -1.4300 2.9275 3.0524 17 1 -2.1519 2.1244 3.0314 18 6 -0.7067 3.1801 4.2099 19 7 -0.1567 4.3611 4.3975 20 14 -0.5135 1.8441 5.5011 21 1 0.7051 1.0471 5.2102 22 1 -0.3889 2.4673 6.8433 23 1 -1.7035 0.9561 5.4762 24 6 -2.3575 4.0359 1.0679 25 6 -3.7667 3.8024 1.6162 26 6 -3.2064 2.8826 0.5294 27 6 1.5512 2.1862 1.2271 28 8 1.7893 1.9226 2.3862 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.1148 -0.4434 0.8801 35 1 7.0026 2.6216 -1.9386 36 1 6.5083 3.9538 -0.8667 37 1 7.6000 2.6841 -0.2630 38 1 3.9285 3.3669 -1.0607 39 1 1.5594 2.0101 -2.0653 40 1 0.6844 4.3156 2.5342 41 1 0.0438 5.1309 1.0874 42 1 0.2833 4.5632 5.2380 43 1 -2.2069 4.8968 0.4165 44 1 -3.8537 3.3957 2.6237 45 1 -4.5434 4.5097 1.3256 46 1 -3.6146 2.9848 -0.4760 47 1 -2.9251 1.8711 0.8223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755733128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:30 Heat of formation + Delta-G solvation = 78.389741 kcal Electronic energy + Delta-G solvation = -33057.514691 eV Core-core repulsion = 28858.526801 eV Total energy + Delta-G solvation = -4198.987889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.48870 -41.99895 -39.35892 -38.84483 -37.46426 -36.20529 -34.94184 -34.08720 -33.17428 -32.02263 -31.39218 -28.68686 -27.90439 -26.47385 -25.53466 -24.27277 -22.99743 -22.84343 -22.06818 -21.74365 -21.60691 -20.75769 -18.98909 -18.47401 -18.23611 -17.45870 -17.28515 -16.81944 -16.54877 -16.25745 -16.22169 -16.06959 -15.63010 -15.37482 -15.17540 -15.02125 -14.96884 -14.64531 -14.28579 -13.79967 -13.68812 -13.57123 -13.44040 -13.17113 -12.95580 -12.77074 -12.68423 -12.46576 -12.43627 -12.21403 -12.17994 -11.98797 -11.91863 -11.67575 -11.51127 -11.14812 -10.96221 -10.62129 -10.48023 -10.44225 -10.32180 -9.50298 -8.64571 -8.01088 -5.55366 0.76494 0.91673 1.34797 1.44865 1.48465 1.52476 1.59101 1.81336 2.24103 2.39353 2.46644 3.15891 3.27136 3.33156 3.44904 3.47477 3.78188 3.90912 3.97476 4.22518 4.28003 4.29009 4.32983 4.43304 4.46849 4.47667 4.50213 4.65391 4.68868 4.74546 4.76551 4.90744 4.94149 4.97737 5.00158 5.04604 5.17365 5.27764 5.34319 5.36377 5.51864 5.52471 5.64820 5.98046 6.01660 6.31505 6.47005 6.60944 6.77941 7.01448 7.38614 7.68007 8.19251 9.02806 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011811 B = 0.004727 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.175785 B = 5921.591168 C = 6811.691003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C 0.219 3.781 4 C -0.257 4.257 5 C 0.071 3.929 6 N -0.321 5.321 7 N -0.373 5.373 8 C 0.091 3.909 9 C 0.085 3.915 10 N -0.701 5.701 11 C 0.703 3.297 12 O -0.582 6.582 13 N -0.582 5.582 14 C 0.358 3.642 15 N -0.543 5.543 16 C -0.268 4.268 17 H 0.053 0.947 18 C 0.002 3.998 19 N -0.910 5.910 20 Si 0.943 3.057 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.269 1.269 24 C 0.100 3.900 25 C -0.182 4.182 26 C -0.198 4.198 27 C 0.526 3.474 28 O -0.495 6.495 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.201 0.799 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.189 0.811 39 H 0.446 0.554 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.257 0.743 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.007 -5.747 -14.713 18.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C 0.127 3.873 4 C -0.270 4.270 5 C -0.115 4.115 6 N -0.142 5.142 7 N -0.154 5.154 8 C -0.049 4.049 9 C -0.064 4.064 10 N -0.366 5.366 11 C 0.404 3.596 12 O -0.459 6.459 13 N -0.332 5.332 14 C 0.150 3.850 15 N -0.260 5.260 16 C -0.397 4.397 17 H 0.070 0.930 18 C -0.198 4.198 19 N -0.553 5.553 20 Si 0.772 3.228 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.194 1.194 24 C -0.007 4.007 25 C -0.221 4.221 26 C -0.238 4.238 27 C 0.312 3.688 28 O -0.366 6.366 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.217 0.783 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.206 0.794 39 H 0.292 0.708 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.115 0.885 44 H 0.096 0.904 45 H 0.122 0.878 46 H 0.117 0.883 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.297 -5.480 -14.109 18.887 hybrid contribution -0.903 -0.211 0.732 1.182 sum 10.393 -5.691 -13.378 17.871 Atomic orbital electron populations 1.21750 0.95463 1.02774 1.00911 1.21731 0.95968 0.91086 1.05505 1.19356 0.89784 0.94502 0.83666 1.19551 0.92858 0.99429 1.15132 1.24003 0.88972 1.00235 0.98279 1.77345 1.21921 0.96956 1.17989 1.48809 1.06297 1.15333 1.44917 1.22259 0.85492 0.95170 1.01938 1.22500 0.84236 0.99900 0.99718 1.45500 1.52696 1.29242 1.09164 1.16189 0.79374 0.82068 0.81969 1.90898 1.47823 1.42526 1.64664 1.48474 1.46236 1.30643 1.07833 1.21241 0.84420 0.86297 0.93011 1.43865 1.00941 1.57571 1.23667 1.18841 1.22721 1.08808 0.89316 0.92960 1.25533 0.99164 0.96642 0.98440 1.69844 1.40115 1.20275 1.25030 0.85661 0.78264 0.80296 0.78625 1.21467 1.21480 1.19423 1.21367 0.85806 0.96890 0.96658 1.23066 0.97302 1.03538 0.98177 1.23173 1.06812 0.96025 0.97797 1.21308 0.76755 0.80421 0.90291 1.90747 1.57435 1.68034 1.20344 0.96085 0.92316 0.90059 0.86463 0.89633 0.78256 0.88560 0.87427 0.88840 0.79383 0.70764 0.87690 0.91795 0.93359 0.88495 0.90435 0.87767 0.88323 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.38 71.98 0.68 -3.47 16 2 C -0.10 -2.43 4.78 30.60 0.15 -2.28 16 3 C 0.22 6.08 1.05 2.24 0.00 6.08 16 4 C -0.26 -6.44 5.02 -20.14 -0.10 -6.54 16 5 C 0.07 1.76 11.19 85.23 0.95 2.71 16 6 N -0.32 -8.21 12.58 -57.03 -0.72 -8.93 16 7 N -0.37 -7.83 4.01 -369.56 -1.48 -9.32 16 8 C 0.09 1.04 11.47 127.77 1.47 2.50 16 9 C 0.09 1.88 10.96 83.54 0.92 2.79 16 10 N -0.70 -17.89 4.61 -443.25 -2.04 -19.94 16 11 C 0.70 25.07 8.52 179.44 1.53 26.60 16 12 O -0.58 -23.55 17.48 -3.83 -0.07 -23.62 16 13 N -0.58 -23.95 2.84 -784.21 -2.23 -26.18 16 14 C 0.36 17.23 5.90 170.96 1.01 18.24 16 15 N -0.54 -26.90 3.04 -689.71 -2.09 -28.99 16 16 C -0.27 -14.43 8.09 84.03 0.68 -13.75 16 17 H 0.05 2.90 7.14 -2.91 -0.02 2.88 16 18 C 0.00 0.08 4.97 84.86 0.42 0.51 16 19 N -0.91 -52.31 11.36 21.65 0.25 -52.06 16 20 Si 0.94 46.50 29.61 68.60 2.03 48.54 16 21 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 23 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 24 C 0.10 4.38 6.62 44.99 0.30 4.68 16 25 C -0.18 -7.19 9.80 30.60 0.30 -6.89 16 26 C -0.20 -7.60 10.07 30.59 0.31 -7.29 16 27 C 0.53 20.99 5.80 87.94 0.51 21.50 16 28 O -0.50 -24.03 17.75 -2.90 -0.05 -24.08 16 29 H 0.02 0.76 7.29 -2.39 -0.02 0.74 16 30 H 0.06 1.57 7.52 -2.39 -0.02 1.55 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 2.03 7.54 -2.39 -0.02 2.01 16 34 H 0.20 4.05 7.49 -2.91 -0.02 4.03 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.19 3.44 8.06 -2.91 -0.02 3.41 16 39 H 0.45 8.28 8.96 -92.71 -0.83 7.45 16 40 H 0.11 5.79 5.27 -2.39 -0.01 5.77 16 41 H 0.06 3.01 7.76 -2.39 -0.02 2.99 16 42 H 0.26 14.44 8.32 -92.71 -0.77 13.67 16 43 H 0.10 4.14 8.10 -2.39 -0.02 4.12 16 44 H 0.08 3.42 6.93 -2.39 -0.02 3.41 16 45 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 46 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 47 H 0.07 2.80 7.98 -2.39 -0.02 2.78 16 Total: -1.00 -73.73 393.57 2.88 -70.85 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.18 Total: 28.34 kcal Atomic # 6 Polarization: 36.28 SS G_CDS: 9.11 Total: 45.39 kcal Atomic # 7 Polarization: -137.10 SS G_CDS: -8.32 Total: -145.42 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -0.12 Total: -47.70 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.54 kcal Total: -73.73 2.88 -70.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755733128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.238 kcal (2) G-P(sol) polarization free energy of solvation -73.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds