Wall clock time and date at job start Wed Apr 1 2020 04:30:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53001 * 109.46901 * 2 1
4 4 C 1.50705 * 110.53221 * 182.87045 * 3 2 1
5 5 C 1.39862 * 126.04390 * 332.15502 * 4 3 2
6 6 N 1.30835 * 108.20663 * 179.97438 * 5 4 3
7 7 N 1.40086 * 108.20330 * 359.97438 * 6 5 4
8 8 C 1.46500 * 126.03733 * 179.97438 * 7 6 5
9 9 C 1.34945 * 107.92635 * 359.76380 * 7 6 5
10 10 N 1.47313 * 110.60302 * 305.70213 * 3 2 1
11 11 C 1.34522 * 106.62012 * 118.52681 * 10 3 2
12 12 O 1.21537 * 123.77065 * 180.02562 * 11 10 3
13 13 N 1.33794 * 112.45973 * 0.02562 * 11 10 3
14 14 C 1.46504 * 124.17682 * 179.97438 * 13 11 10
15 15 N 1.46495 * 109.46775 * 90.02636 * 14 13 11
16 16 C 1.36941 * 119.99822 * 90.00232 * 15 14 13
17 17 H 1.08001 * 120.00026 * 216.31257 * 16 15 14
18 18 C 1.38813 * 120.00594 * 36.31157 * 16 15 14
19 19 N 1.31619 * 119.99400 * 21.20061 * 18 16 15
20 20 Si 1.86797 * 120.00476 * 201.20943 * 18 16 15
21 21 H 1.48497 * 109.47225 * 89.99372 * 20 18 16
22 22 H 1.48500 * 109.46886 * 209.99912 * 20 18 16
23 23 H 1.48505 * 109.46733 * 329.99448 * 20 18 16
24 24 C 1.46498 * 120.00419 * 269.99776 * 15 14 13
25 25 C 1.53001 * 117.50286 * 194.41991 * 24 15 14
26 26 C 1.52995 * 117.50152 * 125.79110 * 24 15 14
27 27 C 1.34766 * 111.64132 * 0.23032 * 13 11 10
28 28 O 1.21237 * 127.15753 * 179.72986 * 27 13 11
29 29 H 1.09002 * 109.47086 * 299.99645 * 1 2 3
30 30 H 1.09002 * 109.46846 * 59.99903 * 1 2 3
31 31 H 1.08993 * 109.47019 * 179.97438 * 1 2 3
32 32 H 1.09002 * 109.47086 * 240.00355 * 2 1 3
33 33 H 1.09001 * 109.47314 * 119.99856 * 2 1 3
34 34 H 1.08005 * 125.89351 * 359.95272 * 5 4 3
35 35 H 1.08998 * 109.46723 * 90.02948 * 8 7 6
36 36 H 1.08995 * 109.47518 * 210.03142 * 8 7 6
37 37 H 1.09002 * 109.46892 * 330.03185 * 8 7 6
38 38 H 1.08003 * 126.12995 * 180.23413 * 9 7 6
39 39 H 0.97001 * 126.68806 * 298.49268 * 10 3 2
40 40 H 1.08997 * 109.46946 * 210.02410 * 14 13 11
41 41 H 1.08998 * 109.46867 * 330.02546 * 14 13 11
42 42 H 0.97001 * 120.00051 * 174.74325 * 19 18 16
43 43 H 1.09001 * 115.54726 * 340.12498 * 24 15 14
44 44 H 1.09002 * 117.49754 * 359.97438 * 25 24 15
45 45 H 1.08997 * 117.49897 * 145.02156 * 25 24 15
46 46 H 1.08994 * 117.50327 * 214.97821 * 26 24 15
47 47 H 1.08997 * 117.50037 * 0.02562 * 26 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5451 1.4711 -0.0707
5 6 4.4101 0.4782 0.4007
6 7 5.6386 0.8590 0.1611
7 7 5.5942 2.1079 -0.4719
8 6 6.7503 2.8921 -0.9133
9 6 4.2983 2.4589 -0.6076
10 7 1.4541 2.1995 -1.1198
11 6 0.7452 3.2048 -0.5754
12 8 0.1284 4.0259 -1.2255
13 7 0.7950 3.2000 0.7616
14 6 0.1163 4.1793 1.6140
15 7 -1.2284 3.6963 1.9373
16 6 -1.4300 2.9275 3.0524
17 1 -2.1519 2.1244 3.0314
18 6 -0.7067 3.1801 4.2099
19 7 -0.1567 4.3611 4.3975
20 14 -0.5135 1.8441 5.5011
21 1 0.7051 1.0471 5.2102
22 1 -0.3889 2.4673 6.8433
23 1 -1.7035 0.9561 5.4762
24 6 -2.3575 4.0359 1.0679
25 6 -3.7667 3.8024 1.6162
26 6 -3.2064 2.8826 0.5294
27 6 1.5512 2.1862 1.2271
28 8 1.7893 1.9226 2.3862
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 4.1148 -0.4434 0.8801
35 1 7.0026 2.6216 -1.9386
36 1 6.5083 3.9538 -0.8667
37 1 7.6000 2.6841 -0.2630
38 1 3.9285 3.3669 -1.0607
39 1 1.5594 2.0101 -2.0653
40 1 0.6844 4.3156 2.5342
41 1 0.0438 5.1309 1.0874
42 1 0.2833 4.5632 5.2380
43 1 -2.2069 4.8968 0.4165
44 1 -3.8537 3.3957 2.6237
45 1 -4.5434 4.5097 1.3256
46 1 -3.6146 2.9848 -0.4760
47 1 -2.9251 1.8711 0.8223
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000755733128.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:30
Heat of formation + Delta-G solvation = 78.389741 kcal
Electronic energy + Delta-G solvation = -33057.514691 eV
Core-core repulsion = 28858.526801 eV
Total energy + Delta-G solvation = -4198.987889 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-43.48870 -41.99895 -39.35892 -38.84483 -37.46426 -36.20529 -34.94184 -34.08720
-33.17428 -32.02263 -31.39218 -28.68686 -27.90439 -26.47385 -25.53466 -24.27277
-22.99743 -22.84343 -22.06818 -21.74365 -21.60691 -20.75769 -18.98909 -18.47401
-18.23611 -17.45870 -17.28515 -16.81944 -16.54877 -16.25745 -16.22169 -16.06959
-15.63010 -15.37482 -15.17540 -15.02125 -14.96884 -14.64531 -14.28579 -13.79967
-13.68812 -13.57123 -13.44040 -13.17113 -12.95580 -12.77074 -12.68423 -12.46576
-12.43627 -12.21403 -12.17994 -11.98797 -11.91863 -11.67575 -11.51127 -11.14812
-10.96221 -10.62129 -10.48023 -10.44225 -10.32180 -9.50298 -8.64571 -8.01088
-5.55366 0.76494 0.91673 1.34797 1.44865 1.48465 1.52476 1.59101
1.81336 2.24103 2.39353 2.46644 3.15891 3.27136 3.33156 3.44904
3.47477 3.78188 3.90912 3.97476 4.22518 4.28003 4.29009 4.32983
4.43304 4.46849 4.47667 4.50213 4.65391 4.68868 4.74546 4.76551
4.90744 4.94149 4.97737 5.00158 5.04604 5.17365 5.27764 5.34319
5.36377 5.51864 5.52471 5.64820 5.98046 6.01660 6.31505 6.47005
6.60944 6.77941 7.01448 7.38614 7.68007 8.19251 9.02806
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.011811 B = 0.004727 C = 0.004110
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2370.175785 B = 5921.591168 C = 6811.691003
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.105 4.105
3 C 0.219 3.781
4 C -0.257 4.257
5 C 0.071 3.929
6 N -0.321 5.321
7 N -0.373 5.373
8 C 0.091 3.909
9 C 0.085 3.915
10 N -0.701 5.701
11 C 0.703 3.297
12 O -0.582 6.582
13 N -0.582 5.582
14 C 0.358 3.642
15 N -0.543 5.543
16 C -0.268 4.268
17 H 0.053 0.947
18 C 0.002 3.998
19 N -0.910 5.910
20 Si 0.943 3.057
21 H -0.288 1.288
22 H -0.289 1.289
23 H -0.269 1.269
24 C 0.100 3.900
25 C -0.182 4.182
26 C -0.198 4.198
27 C 0.526 3.474
28 O -0.495 6.495
29 H 0.020 0.980
30 H 0.058 0.942
31 H 0.080 0.920
32 H 0.117 0.883
33 H 0.085 0.915
34 H 0.201 0.799
35 H 0.096 0.904
36 H 0.107 0.893
37 H 0.093 0.907
38 H 0.189 0.811
39 H 0.446 0.554
40 H 0.106 0.894
41 H 0.064 0.936
42 H 0.257 0.743
43 H 0.097 0.903
44 H 0.077 0.923
45 H 0.104 0.896
46 H 0.098 0.902
47 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.007 -5.747 -14.713 18.698
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.143 4.143
3 C 0.127 3.873
4 C -0.270 4.270
5 C -0.115 4.115
6 N -0.142 5.142
7 N -0.154 5.154
8 C -0.049 4.049
9 C -0.064 4.064
10 N -0.366 5.366
11 C 0.404 3.596
12 O -0.459 6.459
13 N -0.332 5.332
14 C 0.150 3.850
15 N -0.260 5.260
16 C -0.397 4.397
17 H 0.070 0.930
18 C -0.198 4.198
19 N -0.553 5.553
20 Si 0.772 3.228
21 H -0.215 1.215
22 H -0.215 1.215
23 H -0.194 1.194
24 C -0.007 4.007
25 C -0.221 4.221
26 C -0.238 4.238
27 C 0.312 3.688
28 O -0.366 6.366
29 H 0.039 0.961
30 H 0.077 0.923
31 H 0.099 0.901
32 H 0.135 0.865
33 H 0.104 0.896
34 H 0.217 0.783
35 H 0.114 0.886
36 H 0.126 0.874
37 H 0.112 0.888
38 H 0.206 0.794
39 H 0.292 0.708
40 H 0.123 0.877
41 H 0.082 0.918
42 H 0.066 0.934
43 H 0.115 0.885
44 H 0.096 0.904
45 H 0.122 0.878
46 H 0.117 0.883
47 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 11.297 -5.480 -14.109 18.887
hybrid contribution -0.903 -0.211 0.732 1.182
sum 10.393 -5.691 -13.378 17.871
Atomic orbital electron populations
1.21750 0.95463 1.02774 1.00911 1.21731 0.95968 0.91086 1.05505
1.19356 0.89784 0.94502 0.83666 1.19551 0.92858 0.99429 1.15132
1.24003 0.88972 1.00235 0.98279 1.77345 1.21921 0.96956 1.17989
1.48809 1.06297 1.15333 1.44917 1.22259 0.85492 0.95170 1.01938
1.22500 0.84236 0.99900 0.99718 1.45500 1.52696 1.29242 1.09164
1.16189 0.79374 0.82068 0.81969 1.90898 1.47823 1.42526 1.64664
1.48474 1.46236 1.30643 1.07833 1.21241 0.84420 0.86297 0.93011
1.43865 1.00941 1.57571 1.23667 1.18841 1.22721 1.08808 0.89316
0.92960 1.25533 0.99164 0.96642 0.98440 1.69844 1.40115 1.20275
1.25030 0.85661 0.78264 0.80296 0.78625 1.21467 1.21480 1.19423
1.21367 0.85806 0.96890 0.96658 1.23066 0.97302 1.03538 0.98177
1.23173 1.06812 0.96025 0.97797 1.21308 0.76755 0.80421 0.90291
1.90747 1.57435 1.68034 1.20344 0.96085 0.92316 0.90059 0.86463
0.89633 0.78256 0.88560 0.87427 0.88840 0.79383 0.70764 0.87690
0.91795 0.93359 0.88495 0.90435 0.87767 0.88323 0.91458
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.14 9.38 71.98 0.68 -3.47 16
2 C -0.10 -2.43 4.78 30.60 0.15 -2.28 16
3 C 0.22 6.08 1.05 2.24 0.00 6.08 16
4 C -0.26 -6.44 5.02 -20.14 -0.10 -6.54 16
5 C 0.07 1.76 11.19 85.23 0.95 2.71 16
6 N -0.32 -8.21 12.58 -57.03 -0.72 -8.93 16
7 N -0.37 -7.83 4.01 -369.56 -1.48 -9.32 16
8 C 0.09 1.04 11.47 127.77 1.47 2.50 16
9 C 0.09 1.88 10.96 83.54 0.92 2.79 16
10 N -0.70 -17.89 4.61 -443.25 -2.04 -19.94 16
11 C 0.70 25.07 8.52 179.44 1.53 26.60 16
12 O -0.58 -23.55 17.48 -3.83 -0.07 -23.62 16
13 N -0.58 -23.95 2.84 -784.21 -2.23 -26.18 16
14 C 0.36 17.23 5.90 170.96 1.01 18.24 16
15 N -0.54 -26.90 3.04 -689.71 -2.09 -28.99 16
16 C -0.27 -14.43 8.09 84.03 0.68 -13.75 16
17 H 0.05 2.90 7.14 -2.91 -0.02 2.88 16
18 C 0.00 0.08 4.97 84.86 0.42 0.51 16
19 N -0.91 -52.31 11.36 21.65 0.25 -52.06 16
20 Si 0.94 46.50 29.61 68.60 2.03 48.54 16
21 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16
22 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16
23 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16
24 C 0.10 4.38 6.62 44.99 0.30 4.68 16
25 C -0.18 -7.19 9.80 30.60 0.30 -6.89 16
26 C -0.20 -7.60 10.07 30.59 0.31 -7.29 16
27 C 0.53 20.99 5.80 87.94 0.51 21.50 16
28 O -0.50 -24.03 17.75 -2.90 -0.05 -24.08 16
29 H 0.02 0.76 7.29 -2.39 -0.02 0.74 16
30 H 0.06 1.57 7.52 -2.39 -0.02 1.55 16
31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16
32 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16
33 H 0.09 2.03 7.54 -2.39 -0.02 2.01 16
34 H 0.20 4.05 7.49 -2.91 -0.02 4.03 16
35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16
36 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16
37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16
38 H 0.19 3.44 8.06 -2.91 -0.02 3.41 16
39 H 0.45 8.28 8.96 -92.71 -0.83 7.45 16
40 H 0.11 5.79 5.27 -2.39 -0.01 5.77 16
41 H 0.06 3.01 7.76 -2.39 -0.02 2.99 16
42 H 0.26 14.44 8.32 -92.71 -0.77 13.67 16
43 H 0.10 4.14 8.10 -2.39 -0.02 4.12 16
44 H 0.08 3.42 6.93 -2.39 -0.02 3.41 16
45 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16
46 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16
47 H 0.07 2.80 7.98 -2.39 -0.02 2.78 16
Total: -1.00 -73.73 393.57 2.88 -70.85
By element:
Atomic # 1 Polarization: 28.16 SS G_CDS: 0.18 Total: 28.34 kcal
Atomic # 6 Polarization: 36.28 SS G_CDS: 9.11 Total: 45.39 kcal
Atomic # 7 Polarization: -137.10 SS G_CDS: -8.32 Total: -145.42 kcal
Atomic # 8 Polarization: -47.58 SS G_CDS: -0.12 Total: -47.70 kcal
Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.54 kcal
Total: -73.73 2.88 -70.85 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000755733128.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 149.238 kcal
(2) G-P(sol) polarization free energy of solvation -73.730 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.508 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.848 kcal
(6) G-S(sol) free energy of system = (1) + (5) 78.390 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds