Wall clock time and date at job start Wed Apr 1 2020 04:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47329 * 2 1 4 4 C 1.53004 * 109.47109 * 294.51734 * 3 2 1 5 5 C 1.52995 * 109.47244 * 174.51835 * 3 2 1 6 6 N 1.46503 * 109.47159 * 54.51561 * 3 2 1 7 7 C 1.46497 * 120.00060 * 253.07043 * 6 3 2 8 8 C 1.50699 * 109.46849 * 269.99522 * 7 6 3 9 9 H 1.08003 * 120.00365 * 0.02562 * 8 7 6 10 10 C 1.37883 * 120.00173 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99488 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00059 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47153 * 90.00470 * 12 10 8 14 14 H 1.48503 * 109.47041 * 210.00011 * 12 10 8 15 15 H 1.48493 * 109.47341 * 330.00049 * 12 10 8 16 16 C 1.34779 * 119.99888 * 73.06304 * 6 3 2 17 17 O 1.21277 * 119.99884 * 186.58916 * 16 6 3 18 18 C 1.50698 * 119.99805 * 6.59136 * 16 6 3 19 19 N 1.46507 * 109.46933 * 187.26277 * 18 16 6 20 20 N 1.40156 * 126.01048 * 265.31831 * 19 18 16 21 21 H 0.96993 * 125.46287 * 359.96498 * 20 19 18 22 22 C 1.34339 * 109.08143 * 180.12255 * 20 19 18 23 23 C 1.38383 * 108.49990 * 359.61008 * 22 20 19 24 24 C 1.46817 * 134.77134 * 180.24335 * 23 22 20 25 25 O 1.22104 * 121.29477 * 0.02562 * 24 23 22 26 26 N 1.34408 * 117.40251 * 179.97438 * 24 23 22 27 27 C 1.31372 * 120.94777 * 0.02562 * 26 24 23 28 28 N 1.32034 * 123.74439 * 359.97438 * 27 26 24 29 29 C 1.32386 * 121.66895 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47053 * 299.99773 * 1 2 3 31 31 H 1.08999 * 109.46842 * 59.99890 * 1 2 3 32 32 H 1.09000 * 109.47362 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46817 * 239.99730 * 2 1 3 34 34 H 1.08999 * 109.46842 * 120.00110 * 2 1 3 35 35 H 1.09000 * 109.46971 * 179.97438 * 4 3 2 36 36 H 1.08997 * 109.47071 * 300.00197 * 4 3 2 37 37 H 1.08999 * 109.46906 * 59.99739 * 4 3 2 38 38 H 1.09005 * 109.46694 * 323.47220 * 5 3 2 39 39 H 1.08995 * 109.47391 * 83.47893 * 5 3 2 40 40 H 1.09003 * 109.46880 * 203.48024 * 5 3 2 41 41 H 1.09003 * 109.47594 * 29.99509 * 7 6 3 42 42 H 1.08999 * 109.47077 * 149.99871 * 7 6 3 43 43 H 0.96995 * 119.99541 * 179.97438 * 11 10 8 44 44 H 1.09003 * 109.47340 * 67.26558 * 18 16 6 45 45 H 1.08995 * 109.47195 * 307.26156 * 18 16 6 46 46 H 1.08002 * 125.74422 * 179.87268 * 22 20 19 47 47 H 1.08007 * 118.12959 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6457 2.1228 -1.3125 5 6 3.5638 1.4446 0.1378 6 7 1.4469 2.1702 1.1247 7 6 0.4021 3.1680 0.8822 8 6 1.0367 4.5184 0.6704 9 1 2.1109 4.6228 0.7119 10 6 0.2461 5.6205 0.4227 11 7 -1.0619 5.4933 0.3718 12 14 1.0328 7.2941 0.1595 13 1 1.3193 7.4848 -1.2851 14 1 0.1045 8.3560 0.6243 15 1 2.2997 7.3723 0.9300 16 6 1.8624 1.9215 2.3825 17 8 1.2917 2.4336 3.3221 18 6 3.0362 1.0070 2.6213 19 7 3.1799 0.7620 4.0586 20 7 4.0156 1.4673 4.9352 21 1 4.5981 2.2024 4.6881 22 6 3.8832 0.9598 6.1720 23 6 2.9605 -0.0706 6.1273 24 6 2.3920 -0.9932 7.1178 25 8 2.7252 -0.9475 8.2916 26 7 1.4898 -1.8892 6.6823 27 6 1.1360 -1.9318 5.4178 28 7 1.6201 -1.1232 4.4931 29 6 2.5155 -0.1923 4.7835 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0087 3.1506 -1.3123 36 1 2.0869 1.5814 -2.1493 37 1 0.5602 2.1213 -1.4106 38 1 3.8693 0.6392 0.8057 39 1 4.0175 1.2960 -0.8420 40 1 3.8901 2.4003 0.5481 41 1 -0.1664 2.8905 -0.0054 42 1 -0.2656 3.2113 1.7427 43 1 -1.6181 6.2686 0.1979 44 1 3.9442 1.4741 2.2398 45 1 2.8703 0.0608 2.1063 46 1 4.4054 1.3015 7.0534 47 1 0.4075 -2.6704 5.1175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787941416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:48 Heat of formation + Delta-G solvation = 86.125836 kcal Electronic energy + Delta-G solvation = -32177.598486 eV Core-core repulsion = 27978.946059 eV Total energy + Delta-G solvation = -4198.652427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.38443 -40.23773 -39.08603 -37.15565 -36.84523 -34.27840 -33.29886 -32.36533 -31.95228 -30.54721 -30.46692 -29.49240 -26.97299 -26.42061 -25.05970 -23.63355 -23.28742 -22.88890 -21.46077 -20.70337 -19.48192 -18.61143 -18.39890 -16.80916 -16.60010 -16.51006 -16.32890 -15.72162 -15.54731 -15.26914 -14.94343 -14.64010 -14.41711 -14.30909 -14.03591 -13.95851 -13.70370 -13.34090 -13.21540 -12.68602 -12.53442 -12.34178 -12.17249 -11.85738 -11.64647 -11.61297 -11.24426 -11.18550 -11.11441 -10.90312 -10.78024 -10.62224 -10.51297 -10.31792 -10.23043 -9.86340 -9.76768 -9.67649 -9.21897 -8.59831 -8.55567 -7.95323 -7.91159 -6.22121 -4.27743 0.18774 0.62023 1.68802 2.49416 2.84667 2.92466 3.14025 3.22088 3.23345 3.46549 3.99628 4.05312 4.25122 4.33090 4.39724 4.44743 4.57425 4.59985 4.77482 4.84226 4.89642 4.96283 5.10639 5.11986 5.12808 5.32766 5.50118 5.57562 5.75075 5.83793 5.86939 5.94164 6.01076 6.04514 6.11459 6.22587 6.34174 6.53149 6.55501 6.64007 6.76732 6.87899 7.24029 7.29654 7.48079 7.72097 8.02643 8.08989 8.31210 8.56898 8.77119 8.78161 9.36976 10.85752 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.003549 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.844173 B = 7888.653053 C = 8760.489310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.158 3.842 4 C -0.147 4.147 5 C -0.182 4.182 6 N -0.574 5.574 7 C 0.246 3.754 8 C -0.529 4.529 9 H 0.055 0.945 10 C 0.064 3.936 11 N -0.888 5.888 12 Si 0.895 3.105 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.277 1.277 16 C 0.491 3.509 17 O -0.525 6.525 18 C 0.094 3.906 19 N -0.347 5.347 20 N -0.420 5.420 21 H 0.460 0.540 22 C 0.253 3.747 23 C -0.386 4.386 24 C 0.565 3.435 25 O -0.529 6.529 26 N -0.647 5.647 27 C 0.429 3.571 28 N -0.631 5.631 29 C 0.473 3.527 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.265 0.735 44 H 0.130 0.870 45 H 0.143 0.857 46 H 0.221 0.779 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.511 -9.407 -2.651 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C 0.073 3.927 4 C -0.204 4.204 5 C -0.240 4.240 6 N -0.306 5.306 7 C 0.127 3.873 8 C -0.567 4.567 9 H 0.073 0.927 10 C -0.139 4.139 11 N -0.527 5.527 12 Si 0.723 3.277 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.202 1.202 16 C 0.274 3.726 17 O -0.402 6.402 18 C -0.029 4.029 19 N -0.142 5.142 20 N -0.127 5.127 21 H 0.309 0.691 22 C 0.100 3.900 23 C -0.405 4.405 24 C 0.351 3.649 25 O -0.408 6.408 26 N -0.392 5.392 27 C 0.137 3.863 28 N -0.371 5.371 29 C 0.220 3.780 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.148 0.852 45 H 0.160 0.840 46 H 0.237 0.763 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 12.771 -9.303 -2.049 15.932 hybrid contribution 1.188 2.231 -0.431 2.563 sum 13.958 -7.073 -2.479 15.843 Atomic orbital electron populations 1.21749 0.94748 1.01185 1.03020 1.22093 0.97778 0.95514 1.01728 1.20502 0.91795 0.91590 0.88846 1.22096 1.03185 1.01935 0.93205 1.22894 0.95837 1.01943 1.03301 1.48347 1.39514 1.39292 1.03421 1.19413 0.85257 0.84492 0.98114 1.21319 0.93166 0.92632 1.49613 0.92709 1.24913 0.94760 0.98976 0.95217 1.69918 1.03443 1.30796 1.48502 0.86551 0.79095 0.83758 0.78285 1.20537 1.21030 1.20164 1.20177 0.85283 0.82618 0.84488 1.90760 1.56405 1.51483 1.41545 1.23421 1.01738 1.04433 0.73263 1.46442 1.35778 1.27359 1.04577 1.44060 1.34812 1.30330 1.03520 0.69099 1.23160 0.91601 0.89032 0.86193 1.22416 1.10378 1.08670 0.99056 1.18218 0.79899 0.79784 0.87016 1.90756 1.60878 1.71336 1.17815 1.69707 1.22944 1.29090 1.17412 1.24545 0.89317 0.88882 0.83585 1.67317 1.18793 1.11997 1.38999 1.18534 0.86953 0.86349 0.86214 0.91924 0.92304 0.93081 0.90984 0.92150 0.90056 0.92754 0.90970 0.92066 0.90760 0.91351 0.93850 0.93978 0.92527 0.85208 0.83998 0.76278 0.79142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.27 37.16 0.34 -1.65 16 2 C -0.13 -1.49 4.81 -26.73 -0.13 -1.62 16 3 C 0.16 2.04 0.69 -131.82 -0.09 1.95 16 4 C -0.15 -2.04 7.10 37.16 0.26 -1.78 16 5 C -0.18 -1.71 7.00 37.15 0.26 -1.45 16 6 N -0.57 -9.97 1.51 -160.18 -0.24 -10.21 16 7 C 0.25 5.62 3.99 -5.20 -0.02 5.60 16 8 C -0.53 -13.14 8.19 -34.44 -0.28 -13.42 16 9 H 0.05 1.34 7.81 -52.48 -0.41 0.93 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -24.59 13.29 55.43 0.74 -23.85 16 12 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 C 0.49 8.49 7.29 -10.99 -0.08 8.41 16 17 O -0.53 -11.80 16.00 5.56 0.09 -11.71 16 18 C 0.09 1.07 4.55 -5.19 -0.02 1.04 16 19 N -0.35 -4.15 3.17 -61.30 -0.19 -4.34 16 20 N -0.42 -3.31 7.14 30.93 0.22 -3.09 16 21 H 0.46 1.67 8.96 -182.56 -1.64 0.03 16 22 C 0.25 2.24 12.05 -16.40 -0.20 2.05 16 23 C -0.39 -5.65 6.37 -104.91 -0.67 -6.32 16 24 C 0.56 10.53 8.00 -12.96 -0.10 10.42 16 25 O -0.53 -11.14 18.03 4.82 0.09 -11.05 16 26 N -0.65 -11.77 10.50 -15.03 -0.16 -11.92 16 27 C 0.43 6.50 12.18 -92.31 -1.12 5.38 16 28 N -0.63 -9.93 10.39 -13.70 -0.14 -10.07 16 29 C 0.47 7.08 8.09 -155.79 -1.26 5.82 16 30 H 0.06 1.03 7.11 -51.93 -0.37 0.66 16 31 H 0.06 0.79 6.58 -51.93 -0.34 0.45 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.65 5.59 -51.93 -0.29 0.36 16 35 H 0.08 1.32 7.06 -51.93 -0.37 0.96 16 36 H 0.05 0.59 8.12 -51.93 -0.42 0.16 16 37 H 0.07 1.13 4.92 -51.93 -0.26 0.88 16 38 H 0.06 0.43 4.70 -51.93 -0.24 0.19 16 39 H 0.07 0.58 7.92 -51.93 -0.41 0.17 16 40 H 0.07 0.71 7.46 -51.93 -0.39 0.32 16 41 H 0.04 1.01 5.99 -51.93 -0.31 0.70 16 42 H 0.04 1.16 7.34 -51.93 -0.38 0.77 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.13 1.02 5.61 -51.93 -0.29 0.72 16 45 H 0.14 1.45 4.47 -51.93 -0.23 1.22 16 46 H 0.22 0.92 8.06 -52.49 -0.42 0.49 16 47 H 0.19 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -39.91 376.28 -9.34 -49.25 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.18 Total: 0.24 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: -3.21 Total: 16.02 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: 0.22 Total: -63.49 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.18 Total: -22.76 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -39.91 -9.34 -49.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787941416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.372 kcal (2) G-P(sol) polarization free energy of solvation -39.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds