Wall clock time and date at job start Wed Apr 1 2020 04:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47329 * 2 1 4 4 C 1.53004 * 109.47109 * 294.51734 * 3 2 1 5 5 C 1.52995 * 109.47244 * 174.51835 * 3 2 1 6 6 N 1.46503 * 109.47159 * 54.51561 * 3 2 1 7 7 C 1.46497 * 120.00060 * 253.07043 * 6 3 2 8 8 C 1.50699 * 109.46849 * 269.99522 * 7 6 3 9 9 H 1.08003 * 120.00365 * 0.02562 * 8 7 6 10 10 C 1.37883 * 120.00173 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99488 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00059 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47153 * 90.00470 * 12 10 8 14 14 H 1.48503 * 109.47041 * 210.00011 * 12 10 8 15 15 H 1.48493 * 109.47341 * 330.00049 * 12 10 8 16 16 C 1.34779 * 119.99888 * 73.06304 * 6 3 2 17 17 O 1.21277 * 119.99884 * 186.58916 * 16 6 3 18 18 C 1.50698 * 119.99805 * 6.59136 * 16 6 3 19 19 N 1.46507 * 109.46933 * 187.26277 * 18 16 6 20 20 N 1.40156 * 126.01048 * 265.31831 * 19 18 16 21 21 H 0.96993 * 125.46287 * 359.96498 * 20 19 18 22 22 C 1.34339 * 109.08143 * 180.12255 * 20 19 18 23 23 C 1.38383 * 108.49990 * 359.61008 * 22 20 19 24 24 C 1.46817 * 134.77134 * 180.24335 * 23 22 20 25 25 O 1.22104 * 121.29477 * 0.02562 * 24 23 22 26 26 N 1.34408 * 117.40251 * 179.97438 * 24 23 22 27 27 C 1.31372 * 120.94777 * 0.02562 * 26 24 23 28 28 N 1.32034 * 123.74439 * 359.97438 * 27 26 24 29 29 C 1.32386 * 121.66895 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47053 * 299.99773 * 1 2 3 31 31 H 1.08999 * 109.46842 * 59.99890 * 1 2 3 32 32 H 1.09000 * 109.47362 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46817 * 239.99730 * 2 1 3 34 34 H 1.08999 * 109.46842 * 120.00110 * 2 1 3 35 35 H 1.09000 * 109.46971 * 179.97438 * 4 3 2 36 36 H 1.08997 * 109.47071 * 300.00197 * 4 3 2 37 37 H 1.08999 * 109.46906 * 59.99739 * 4 3 2 38 38 H 1.09005 * 109.46694 * 323.47220 * 5 3 2 39 39 H 1.08995 * 109.47391 * 83.47893 * 5 3 2 40 40 H 1.09003 * 109.46880 * 203.48024 * 5 3 2 41 41 H 1.09003 * 109.47594 * 29.99509 * 7 6 3 42 42 H 1.08999 * 109.47077 * 149.99871 * 7 6 3 43 43 H 0.96995 * 119.99541 * 179.97438 * 11 10 8 44 44 H 1.09003 * 109.47340 * 67.26558 * 18 16 6 45 45 H 1.08995 * 109.47195 * 307.26156 * 18 16 6 46 46 H 1.08002 * 125.74422 * 179.87268 * 22 20 19 47 47 H 1.08007 * 118.12959 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6457 2.1228 -1.3125 5 6 3.5638 1.4446 0.1378 6 7 1.4469 2.1702 1.1247 7 6 0.4021 3.1680 0.8822 8 6 1.0367 4.5184 0.6704 9 1 2.1109 4.6228 0.7119 10 6 0.2461 5.6205 0.4227 11 7 -1.0619 5.4933 0.3718 12 14 1.0328 7.2941 0.1595 13 1 1.3193 7.4848 -1.2851 14 1 0.1045 8.3560 0.6243 15 1 2.2997 7.3723 0.9300 16 6 1.8624 1.9215 2.3825 17 8 1.2917 2.4336 3.3221 18 6 3.0362 1.0070 2.6213 19 7 3.1799 0.7620 4.0586 20 7 4.0156 1.4673 4.9352 21 1 4.5981 2.2024 4.6881 22 6 3.8832 0.9598 6.1720 23 6 2.9605 -0.0706 6.1273 24 6 2.3920 -0.9932 7.1178 25 8 2.7252 -0.9475 8.2916 26 7 1.4898 -1.8892 6.6823 27 6 1.1360 -1.9318 5.4178 28 7 1.6201 -1.1232 4.4931 29 6 2.5155 -0.1923 4.7835 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0087 3.1506 -1.3123 36 1 2.0869 1.5814 -2.1493 37 1 0.5602 2.1213 -1.4106 38 1 3.8693 0.6392 0.8057 39 1 4.0175 1.2960 -0.8420 40 1 3.8901 2.4003 0.5481 41 1 -0.1664 2.8905 -0.0054 42 1 -0.2656 3.2113 1.7427 43 1 -1.6181 6.2686 0.1979 44 1 3.9442 1.4741 2.2398 45 1 2.8703 0.0608 2.1063 46 1 4.4054 1.3015 7.0534 47 1 0.4075 -2.6704 5.1175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787941416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:47 Heat of formation + Delta-G solvation = 55.959142 kcal Electronic energy + Delta-G solvation = -32178.906612 eV Core-core repulsion = 27978.946059 eV Total energy + Delta-G solvation = -4199.960553 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.36958 -41.50219 -40.23059 -38.46204 -38.09759 -35.59927 -34.82937 -33.49410 -33.44563 -31.62585 -31.53276 -30.70843 -28.55055 -27.46440 -26.12703 -25.03801 -24.37543 -24.23312 -22.65542 -21.82823 -20.47619 -19.80000 -19.47098 -18.70831 -17.78646 -17.67128 -17.34137 -16.98708 -16.71578 -16.65938 -16.20863 -15.90391 -15.68172 -15.44412 -15.22509 -15.06713 -14.85605 -14.54423 -14.34736 -14.17356 -13.71660 -13.62112 -13.34811 -13.29446 -12.86973 -12.79433 -12.74020 -12.59321 -12.40627 -12.23812 -12.13833 -11.92751 -11.83168 -11.68204 -11.52817 -11.28638 -11.02961 -10.91453 -10.61926 -10.45646 -9.77552 -9.45162 -9.12068 -8.21525 -6.34837 -0.75953 -0.24193 0.65385 1.28928 1.35511 1.37580 1.46430 1.58265 2.00977 2.18073 2.39095 3.01681 3.07525 3.08970 3.19442 3.31108 3.58985 3.64123 3.68317 3.84702 3.94467 3.97485 4.00048 4.12854 4.17391 4.42543 4.58139 4.71899 4.77942 4.83577 4.88106 4.95677 5.00190 5.06958 5.11468 5.18344 5.20182 5.22537 5.41542 5.45209 5.54633 5.55682 5.64716 5.82730 5.89265 6.06516 6.31438 6.65995 6.76545 7.05260 7.21504 7.38194 7.60971 8.85637 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.003549 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.844173 B = 7888.653053 C = 8760.489310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.148 3.852 4 C -0.144 4.144 5 C -0.180 4.180 6 N -0.575 5.575 7 C 0.268 3.732 8 C -0.525 4.525 9 H 0.062 0.938 10 C 0.007 3.993 11 N -0.931 5.931 12 Si 0.961 3.039 13 H -0.266 1.266 14 H -0.292 1.292 15 H -0.267 1.267 16 C 0.482 3.518 17 O -0.589 6.589 18 C 0.108 3.892 19 N -0.352 5.352 20 N -0.384 5.384 21 H 0.484 0.516 22 C 0.300 3.700 23 C -0.426 4.426 24 C 0.547 3.453 25 O -0.581 6.581 26 N -0.685 5.685 27 C 0.425 3.575 28 N -0.643 5.643 29 C 0.451 3.549 30 H 0.018 0.982 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.031 0.969 42 H -0.018 1.018 43 H 0.264 0.736 44 H 0.180 0.820 45 H 0.161 0.839 46 H 0.274 0.726 47 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.990 -9.346 -4.523 20.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.064 3.936 4 C -0.201 4.201 5 C -0.237 4.237 6 N -0.306 5.306 7 C 0.147 3.853 8 C -0.564 4.564 9 H 0.080 0.920 10 C -0.191 4.191 11 N -0.571 5.571 12 Si 0.786 3.214 13 H -0.191 1.191 14 H -0.218 1.218 15 H -0.191 1.191 16 C 0.268 3.732 17 O -0.470 6.470 18 C -0.013 4.013 19 N -0.146 5.146 20 N -0.093 5.093 21 H 0.338 0.662 22 C 0.142 3.858 23 C -0.444 4.444 24 C 0.336 3.664 25 O -0.464 6.464 26 N -0.432 5.432 27 C 0.134 3.866 28 N -0.382 5.382 29 C 0.199 3.801 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.000 1.000 43 H 0.072 0.928 44 H 0.197 0.803 45 H 0.178 0.822 46 H 0.289 0.711 47 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 17.320 -9.229 -4.058 20.040 hybrid contribution -0.239 2.261 0.037 2.274 sum 17.081 -6.968 -4.021 18.881 Atomic orbital electron populations 1.21720 0.97070 1.01435 1.00430 1.22105 0.95601 0.94633 1.04081 1.20936 0.94548 0.91657 0.86417 1.22058 1.01365 1.01187 0.95528 1.22880 0.92058 1.02869 1.05901 1.48299 1.38379 1.38443 1.05434 1.18714 0.86006 0.85878 0.94731 1.21621 0.93377 0.93354 1.48060 0.92011 1.25806 0.95140 1.02963 0.95230 1.70071 1.05049 1.31695 1.50242 0.85513 0.78159 0.78854 0.78866 1.19076 1.21791 1.19102 1.21182 0.86191 0.82523 0.83313 1.90732 1.58763 1.54182 1.43315 1.23540 1.00525 1.03934 0.73348 1.46518 1.35885 1.27009 1.05152 1.44337 1.32866 1.29421 1.02631 0.66167 1.23927 0.88655 0.85882 0.87319 1.22146 1.13401 1.10905 0.97954 1.18545 0.80077 0.80557 0.87225 1.90699 1.63032 1.73207 1.19451 1.69613 1.24260 1.30447 1.18922 1.25106 0.89437 0.89243 0.82816 1.67335 1.19201 1.12474 1.39193 1.18744 0.87255 0.87037 0.87109 0.96313 0.93152 0.91364 0.87206 0.90955 0.92712 0.88781 0.94038 0.88898 0.87978 0.91947 0.95109 1.00005 0.92750 0.80324 0.82178 0.71064 0.76174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.27 71.98 0.67 -3.29 16 2 C -0.13 -2.44 4.81 30.59 0.15 -2.29 16 3 C 0.15 3.44 0.69 3.60 0.00 3.45 16 4 C -0.14 -3.79 7.10 71.98 0.51 -3.28 16 5 C -0.18 -2.39 7.00 71.98 0.50 -1.89 16 6 N -0.57 -19.92 1.51 -779.09 -1.18 -21.09 16 7 C 0.27 12.93 3.99 85.63 0.34 13.28 16 8 C -0.53 -26.67 8.19 25.60 0.21 -26.46 16 9 H 0.06 2.98 7.81 -2.91 -0.02 2.95 16 10 C 0.01 0.40 5.46 84.66 0.46 0.86 16 11 N -0.93 -53.83 13.29 21.45 0.28 -53.55 16 12 Si 0.96 41.35 29.54 68.60 2.03 43.37 16 13 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 14 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 15 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 16 C 0.48 16.26 7.29 87.66 0.64 16.90 16 17 O -0.59 -27.08 16.00 -3.02 -0.05 -27.13 16 18 C 0.11 2.05 4.55 85.63 0.39 2.44 16 19 N -0.35 -7.30 3.17 -347.84 -1.10 -8.40 16 20 N -0.38 -4.31 7.14 -56.06 -0.40 -4.71 16 21 H 0.48 0.69 8.96 -213.29 -1.91 -1.22 16 22 C 0.30 4.19 12.05 84.34 1.02 5.21 16 23 C -0.43 -12.01 6.37 -20.05 -0.13 -12.14 16 24 C 0.55 21.01 8.00 86.54 0.69 21.70 16 25 O -0.58 -25.42 18.03 -5.65 -0.10 -25.52 16 26 N -0.69 -25.98 10.50 -319.71 -3.36 -29.33 16 27 C 0.42 13.17 12.18 180.94 2.20 15.38 16 28 N -0.64 -20.03 10.39 -197.26 -2.05 -22.09 16 29 C 0.45 12.91 8.09 134.47 1.09 13.99 16 30 H 0.02 0.63 7.11 -2.39 -0.02 0.62 16 31 H 0.05 1.39 6.58 -2.39 -0.02 1.37 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.26 5.59 -2.39 -0.01 1.24 16 35 H 0.05 1.73 7.06 -2.39 -0.02 1.71 16 36 H 0.09 1.69 8.12 -2.39 -0.02 1.67 16 37 H 0.04 1.33 4.92 -2.39 -0.01 1.32 16 38 H 0.09 0.66 4.70 -2.38 -0.01 0.64 16 39 H 0.10 0.91 7.92 -2.39 -0.02 0.89 16 40 H 0.06 0.96 7.46 -2.39 -0.02 0.95 16 41 H 0.03 1.55 5.99 -2.39 -0.01 1.54 16 42 H -0.02 -1.09 7.34 -2.39 -0.02 -1.11 16 43 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 44 H 0.18 1.67 5.61 -2.39 -0.01 1.66 16 45 H 0.16 2.53 4.47 -2.39 -0.01 2.52 16 46 H 0.27 0.81 8.06 -2.91 -0.02 0.79 16 47 H 0.22 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -99.88 376.28 1.95 -97.93 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -0.87 Total: 6.69 kcal Atomic # 6 Polarization: 35.10 SS G_CDS: 8.75 Total: 43.85 kcal Atomic # 7 Polarization: -131.38 SS G_CDS: -7.80 Total: -139.18 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -0.15 Total: -52.65 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -99.88 1.95 -97.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787941416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.888 kcal (2) G-P(sol) polarization free energy of solvation -99.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds