Wall clock time and date at job start Wed Apr 1 2020 04:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47246 * 2 1 4 4 H 1.08998 * 109.52156 * 54.91867 * 3 2 1 5 5 C 1.52761 * 109.56234 * 294.96604 * 3 2 1 6 6 N 1.46918 * 109.00793 * 185.55098 * 5 3 2 7 7 C 1.34778 * 120.63030 * 233.58507 * 6 5 3 8 8 O 1.21491 * 120.00443 * 4.80200 * 7 6 5 9 9 C 1.48309 * 120.00040 * 184.79656 * 7 6 5 10 10 N 1.32898 * 120.14383 * 76.78559 * 9 7 6 11 11 C 1.31834 * 119.99668 * 180.29935 * 10 9 7 12 12 C 1.39005 * 120.29157 * 359.45448 * 11 10 9 13 13 N 1.31835 * 120.28787 * 0.29170 * 12 11 10 14 14 C 1.32891 * 120.00424 * 359.97438 * 13 12 11 15 15 C 1.48300 * 120.14934 * 179.97438 * 14 13 12 16 16 N 1.34772 * 119.99961 * 354.86790 * 15 14 13 17 17 O 1.21490 * 120.00107 * 174.86089 * 15 14 13 18 18 C 1.46928 * 118.73891 * 53.30846 * 6 5 3 19 19 C 1.53187 * 108.77684 * 306.64660 * 18 6 5 20 20 C 1.53038 * 109.31343 * 54.63253 * 19 18 6 21 21 H 1.09003 * 109.46015 * 178.61506 * 20 19 18 22 22 N 1.46492 * 109.46341 * 58.64240 * 20 19 18 23 23 C 1.36940 * 119.99928 * 84.99447 * 22 20 19 24 24 H 1.07995 * 120.00105 * 0.02562 * 23 22 20 25 25 C 1.38816 * 119.99947 * 180.02562 * 23 22 20 26 26 N 1.31616 * 119.99959 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99885 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47680 * 59.99865 * 27 25 23 29 29 H 1.48499 * 109.46996 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46798 * 299.99179 * 27 25 23 31 31 H 1.08996 * 109.47692 * 60.00118 * 1 2 3 32 32 H 1.09002 * 109.46886 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46844 * 299.99971 * 1 2 3 34 34 H 1.08998 * 109.47007 * 239.99796 * 2 1 3 35 35 H 1.09009 * 109.47486 * 120.00013 * 2 1 3 36 36 H 1.09007 * 109.50531 * 65.66909 * 5 3 2 37 37 H 1.08996 * 109.43368 * 305.38817 * 5 3 2 38 38 H 1.07997 * 119.85347 * 179.72651 * 11 10 9 39 39 H 1.07998 * 119.85704 * 180.28209 * 12 11 10 40 40 H 0.97008 * 120.00363 * 359.97438 * 16 15 14 41 41 H 0.96998 * 120.00445 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.58115 * 66.43676 * 18 6 5 43 43 H 1.09001 * 109.59048 * 186.71353 * 18 6 5 44 44 H 1.08998 * 109.49844 * 174.58655 * 19 18 6 45 45 H 1.09004 * 109.49334 * 294.68093 * 19 18 6 46 46 H 0.97007 * 120.00164 * 265.00787 * 22 20 19 47 47 H 0.96997 * 120.00181 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 0.8407 5 6 1.6377 2.1273 -1.3049 6 7 2.2450 3.4643 -1.3507 7 6 1.4855 4.5565 -1.5673 8 8 0.2773 4.4516 -1.6399 9 6 2.1247 5.8864 -1.7169 10 7 2.7292 6.2122 -2.8547 11 6 3.3015 7.3929 -2.9824 12 6 3.2665 8.3060 -1.9349 13 7 2.6657 7.9966 -0.8030 14 6 2.0895 6.8077 -0.6597 15 6 1.4133 6.4561 0.6124 16 7 1.4704 7.3001 1.6616 17 8 0.8076 5.4074 0.7087 18 6 3.6952 3.5888 -1.1499 19 6 4.0736 2.8881 0.1588 20 6 3.5652 1.4450 0.1257 21 1 3.8546 0.9369 1.0455 22 7 4.1504 0.7476 -1.0220 23 6 5.3877 0.1707 -0.9146 24 1 5.9319 0.2296 0.0163 25 6 5.9424 -0.4897 -2.0023 26 7 5.2793 -0.5611 -3.1370 27 14 7.6299 -1.2772 -1.8555 28 1 7.6045 -2.3066 -0.7856 29 1 7.9931 -1.9137 -3.1470 30 1 8.6340 -0.2366 -1.5175 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.5523 2.2173 -1.3492 37 1 1.9921 1.5359 -2.1491 38 1 3.7959 7.6535 -3.9065 39 1 3.7337 9.2730 -2.0488 40 1 1.9543 8.1374 1.5848 41 1 1.0284 7.0700 2.4938 42 1 4.2208 3.1190 -1.9812 43 1 3.9673 4.6428 -1.0944 44 1 5.1577 2.8894 0.2718 45 1 3.6192 3.4148 0.9980 46 1 3.6614 0.6945 -1.8582 47 1 5.6667 -1.0229 -3.8969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037986056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:05 Heat of formation + Delta-G solvation = -4.871545 kcal Electronic energy + Delta-G solvation = -32283.216444 eV Core-core repulsion = 28080.618075 eV Total energy + Delta-G solvation = -4202.598369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.82203 -39.71938 -39.23280 -37.67112 -35.01899 -34.33353 -33.70247 -33.64832 -32.11956 -31.62932 -29.40555 -28.52802 -26.27493 -25.92504 -24.37953 -23.71643 -23.41321 -21.67677 -20.80689 -20.30912 -18.56364 -18.47773 -18.33376 -17.40387 -17.17396 -16.63770 -16.32035 -15.64926 -15.42020 -15.07962 -14.76641 -14.41617 -14.31375 -14.20711 -13.95064 -13.83537 -13.49174 -13.21900 -13.07244 -12.84296 -12.47600 -12.19469 -12.15639 -11.81713 -11.60258 -11.33107 -11.03795 -10.94352 -10.77287 -10.71699 -10.65505 -10.23959 -10.21454 -10.16221 -10.04136 -9.94287 -9.78500 -9.71706 -9.49145 -9.34839 -8.89238 -8.15753 -6.94442 -5.75867 -3.04196 -0.08313 0.52852 2.41900 2.67787 2.86640 3.05558 3.35457 3.43069 3.48370 3.49032 3.60613 4.00166 4.02839 4.42199 4.59614 4.70252 4.76463 4.85786 5.15969 5.33841 5.41912 5.50458 5.60405 5.63113 5.71305 5.79874 5.86012 5.92049 6.01605 6.14690 6.23386 6.25899 6.43195 6.45114 6.46593 6.48383 6.60223 6.64147 6.67716 6.77427 6.83311 6.95897 7.00084 7.08149 7.21817 7.68982 7.70642 7.93478 8.34540 8.42502 9.54012 10.11182 10.46765 11.46407 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011573 B = 0.003830 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.942365 B = 7309.361306 C = 8502.862394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.070 0.930 5 C 0.125 3.875 6 N -0.583 5.583 7 C 0.588 3.412 8 O -0.517 6.517 9 C 0.117 3.883 10 N -0.409 5.409 11 C 0.082 3.918 12 C 0.055 3.945 13 N -0.411 5.411 14 C 0.051 3.949 15 C 0.572 3.428 16 N -0.834 5.834 17 O -0.493 6.493 18 C 0.124 3.876 19 C -0.149 4.149 20 C 0.180 3.820 21 H 0.052 0.948 22 N -0.718 5.718 23 C -0.238 4.238 24 H 0.068 0.932 25 C -0.010 4.010 26 N -0.931 5.931 27 Si 0.903 3.097 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.288 1.288 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.185 0.815 39 H 0.184 0.816 40 H 0.409 0.591 41 H 0.408 0.592 42 H 0.089 0.911 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 19.107 5.916 20.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.123 4.123 4 H 0.088 0.912 5 C 0.003 3.997 6 N -0.314 5.314 7 C 0.372 3.628 8 O -0.391 6.391 9 C -0.025 4.025 10 N -0.125 5.125 11 C -0.081 4.081 12 C -0.108 4.108 13 N -0.128 5.128 14 C -0.091 4.091 15 C 0.352 3.648 16 N -0.399 5.399 17 O -0.365 6.365 18 C 0.001 3.999 19 C -0.190 4.190 20 C 0.070 3.930 21 H 0.070 0.930 22 N -0.360 5.360 23 C -0.369 4.369 24 H 0.086 0.914 25 C -0.207 4.207 26 N -0.580 5.580 27 Si 0.735 3.265 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.215 1.215 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.202 0.798 39 H 0.201 0.799 40 H 0.239 0.761 41 H 0.240 0.760 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.220 0.780 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.918 18.150 5.830 19.961 hybrid contribution 1.264 0.258 -0.053 1.292 sum -4.653 18.408 5.778 19.846 Atomic orbital electron populations 1.21851 0.96780 1.00902 1.01505 1.21406 0.94322 0.95637 1.03298 1.21671 0.97179 0.96144 0.97326 0.91192 1.21637 0.98930 0.80670 0.98465 1.47812 1.08372 1.06102 1.69137 1.17244 0.86271 0.82051 0.77251 1.90765 1.12857 1.84426 1.51096 1.22279 0.93358 0.97013 0.89874 1.68714 1.04605 1.18024 1.21146 1.24269 0.94251 0.89005 1.00563 1.24038 0.96193 1.01437 0.89111 1.68333 1.04764 1.15688 1.24000 1.22062 0.99364 0.91624 0.96005 1.17617 0.80169 0.84154 0.82831 1.43516 1.57559 1.23889 1.14966 1.90992 1.40652 1.23102 1.81748 1.21606 0.79271 0.98715 1.00306 1.22524 1.01606 0.99591 0.95252 1.20202 0.89905 0.90294 0.92635 0.93036 1.42476 1.19107 1.63874 1.10583 1.19168 0.93678 1.27037 0.96993 0.91376 1.24687 0.98462 1.01488 0.96019 1.69637 1.38144 1.47990 1.02183 0.86330 0.84448 0.79193 0.76543 1.21390 1.21821 1.21477 0.92759 0.93239 0.93298 0.90512 0.92049 0.89326 0.90506 0.79773 0.79920 0.76110 0.76000 0.89279 0.93221 0.90825 0.93371 0.78048 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.67 37.16 0.36 -1.89 16 2 C -0.11 -1.84 5.19 -26.73 -0.14 -1.97 16 3 C -0.10 -1.82 2.12 -90.72 -0.19 -2.02 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 5 C 0.12 2.31 5.02 -3.94 -0.02 2.29 16 6 N -0.58 -10.73 2.98 -173.98 -0.52 -11.25 16 7 C 0.59 11.13 5.24 -12.12 -0.06 11.07 16 8 O -0.52 -11.15 15.53 -14.91 -0.23 -11.38 16 9 C 0.12 1.85 4.50 -82.50 -0.37 1.48 16 10 N -0.41 -5.70 10.43 -9.31 -0.10 -5.80 16 11 C 0.08 0.72 11.23 -17.27 -0.19 0.53 16 12 C 0.06 0.41 11.23 -17.27 -0.19 0.22 16 13 N -0.41 -4.16 9.73 -9.31 -0.09 -4.25 16 14 C 0.05 0.69 6.78 -82.51 -0.56 0.13 16 15 C 0.57 7.87 8.06 -12.12 -0.10 7.77 16 16 N -0.83 -7.32 8.86 30.63 0.27 -7.05 16 17 O -0.49 -8.76 14.56 -14.91 -0.22 -8.97 16 18 C 0.12 2.21 6.07 -3.71 -0.02 2.18 16 19 C -0.15 -2.65 5.78 -26.61 -0.15 -2.81 16 20 C 0.18 3.50 2.53 -67.89 -0.17 3.33 16 21 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 22 N -0.72 -16.78 3.72 -53.39 -0.20 -16.98 16 23 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 24 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 25 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 26 N -0.93 -27.15 13.06 55.49 0.72 -26.42 16 27 Si 0.90 21.85 29.55 -169.99 -5.02 16.83 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 30 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 31 H 0.05 0.81 6.70 -51.93 -0.35 0.46 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.47 7.70 -51.93 -0.40 1.07 16 35 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 36 H 0.09 1.66 5.71 -51.92 -0.30 1.37 16 37 H 0.08 1.52 6.64 -51.93 -0.34 1.18 16 38 H 0.19 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 40 H 0.41 2.67 8.20 -40.82 -0.33 2.33 16 41 H 0.41 2.87 8.93 -40.82 -0.36 2.50 16 42 H 0.09 1.81 7.74 -51.93 -0.40 1.41 16 43 H 0.05 0.81 6.37 -51.93 -0.33 0.48 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.38 9.64 5.95 -40.82 -0.24 9.40 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -34.75 381.70 -8.11 -42.86 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -6.41 Total: 13.13 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: -2.06 Total: 13.54 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: 0.09 Total: -71.76 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.45 Total: -20.35 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.75 -8.11 -42.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037986056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.985 kcal (2) G-P(sol) polarization free energy of solvation -34.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds