Wall clock time and date at job start Wed Apr 1 2020 04:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47246 * 2 1 4 4 H 1.08998 * 109.52156 * 54.91867 * 3 2 1 5 5 C 1.52761 * 109.56234 * 294.96604 * 3 2 1 6 6 N 1.46918 * 109.00793 * 185.55098 * 5 3 2 7 7 C 1.34778 * 120.63030 * 233.58507 * 6 5 3 8 8 O 1.21491 * 120.00443 * 4.80200 * 7 6 5 9 9 C 1.48309 * 120.00040 * 184.79656 * 7 6 5 10 10 N 1.32898 * 120.14383 * 76.78559 * 9 7 6 11 11 C 1.31834 * 119.99668 * 180.29935 * 10 9 7 12 12 C 1.39005 * 120.29157 * 359.45448 * 11 10 9 13 13 N 1.31835 * 120.28787 * 0.29170 * 12 11 10 14 14 C 1.32891 * 120.00424 * 359.97438 * 13 12 11 15 15 C 1.48300 * 120.14934 * 179.97438 * 14 13 12 16 16 N 1.34772 * 119.99961 * 354.86790 * 15 14 13 17 17 O 1.21490 * 120.00107 * 174.86089 * 15 14 13 18 18 C 1.46928 * 118.73891 * 53.30846 * 6 5 3 19 19 C 1.53187 * 108.77684 * 306.64660 * 18 6 5 20 20 C 1.53038 * 109.31343 * 54.63253 * 19 18 6 21 21 H 1.09003 * 109.46015 * 178.61506 * 20 19 18 22 22 N 1.46492 * 109.46341 * 58.64240 * 20 19 18 23 23 C 1.36940 * 119.99928 * 84.99447 * 22 20 19 24 24 H 1.07995 * 120.00105 * 0.02562 * 23 22 20 25 25 C 1.38816 * 119.99947 * 180.02562 * 23 22 20 26 26 N 1.31616 * 119.99959 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99885 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47680 * 59.99865 * 27 25 23 29 29 H 1.48499 * 109.46996 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46798 * 299.99179 * 27 25 23 31 31 H 1.08996 * 109.47692 * 60.00118 * 1 2 3 32 32 H 1.09002 * 109.46886 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46844 * 299.99971 * 1 2 3 34 34 H 1.08998 * 109.47007 * 239.99796 * 2 1 3 35 35 H 1.09009 * 109.47486 * 120.00013 * 2 1 3 36 36 H 1.09007 * 109.50531 * 65.66909 * 5 3 2 37 37 H 1.08996 * 109.43368 * 305.38817 * 5 3 2 38 38 H 1.07997 * 119.85347 * 179.72651 * 11 10 9 39 39 H 1.07998 * 119.85704 * 180.28209 * 12 11 10 40 40 H 0.97008 * 120.00363 * 359.97438 * 16 15 14 41 41 H 0.96998 * 120.00445 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.58115 * 66.43676 * 18 6 5 43 43 H 1.09001 * 109.59048 * 186.71353 * 18 6 5 44 44 H 1.08998 * 109.49844 * 174.58655 * 19 18 6 45 45 H 1.09004 * 109.49334 * 294.68093 * 19 18 6 46 46 H 0.97007 * 120.00164 * 265.00787 * 22 20 19 47 47 H 0.96997 * 120.00181 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 0.8407 5 6 1.6377 2.1273 -1.3049 6 7 2.2450 3.4643 -1.3507 7 6 1.4855 4.5565 -1.5673 8 8 0.2773 4.4516 -1.6399 9 6 2.1247 5.8864 -1.7169 10 7 2.7292 6.2122 -2.8547 11 6 3.3015 7.3929 -2.9824 12 6 3.2665 8.3060 -1.9349 13 7 2.6657 7.9966 -0.8030 14 6 2.0895 6.8077 -0.6597 15 6 1.4133 6.4561 0.6124 16 7 1.4704 7.3001 1.6616 17 8 0.8076 5.4074 0.7087 18 6 3.6952 3.5888 -1.1499 19 6 4.0736 2.8881 0.1588 20 6 3.5652 1.4450 0.1257 21 1 3.8546 0.9369 1.0455 22 7 4.1504 0.7476 -1.0220 23 6 5.3877 0.1707 -0.9146 24 1 5.9319 0.2296 0.0163 25 6 5.9424 -0.4897 -2.0023 26 7 5.2793 -0.5611 -3.1370 27 14 7.6299 -1.2772 -1.8555 28 1 7.6045 -2.3066 -0.7856 29 1 7.9931 -1.9137 -3.1470 30 1 8.6340 -0.2366 -1.5175 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.5523 2.2173 -1.3492 37 1 1.9921 1.5359 -2.1491 38 1 3.7959 7.6535 -3.9065 39 1 3.7337 9.2730 -2.0488 40 1 1.9543 8.1374 1.5848 41 1 1.0284 7.0700 2.4938 42 1 4.2208 3.1190 -1.9812 43 1 3.9673 4.6428 -1.0944 44 1 5.1577 2.8894 0.2718 45 1 3.6192 3.4148 0.9980 46 1 3.6614 0.6945 -1.8582 47 1 5.6667 -1.0229 -3.8969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037986056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:04 Heat of formation + Delta-G solvation = -31.941799 kcal Electronic energy + Delta-G solvation = -32284.390299 eV Core-core repulsion = 28080.618075 eV Total energy + Delta-G solvation = -4203.772224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.76700 -41.10695 -40.23906 -39.17398 -36.05969 -35.79201 -35.35683 -34.54588 -33.45246 -32.98732 -31.08621 -30.05571 -27.50133 -26.78029 -25.85971 -25.19838 -25.12030 -22.58217 -22.26784 -21.59578 -20.01193 -19.40863 -19.27824 -19.21265 -18.63788 -17.65790 -17.46339 -16.64791 -16.52832 -16.43708 -16.17818 -15.88135 -15.67304 -15.61611 -15.26575 -15.08294 -14.83649 -14.64454 -14.43106 -14.31970 -14.09762 -13.68883 -13.16532 -13.00947 -12.98509 -12.80461 -12.66322 -12.58274 -12.43417 -12.23334 -12.14009 -11.86255 -11.75805 -11.60415 -11.46442 -11.34526 -11.15817 -10.86860 -10.82784 -10.60702 -10.34831 -9.67901 -8.92593 -7.86174 -5.13394 -0.96689 -0.28697 1.34105 1.50744 1.52329 1.52704 1.58212 1.71042 2.05116 2.48154 2.61166 2.83392 2.88500 3.21249 3.46173 3.50553 3.72327 3.81816 3.88093 3.92115 4.00323 4.04581 4.17482 4.28157 4.29619 4.40977 4.45102 4.51945 4.63577 4.75409 4.81421 4.98503 4.98766 5.05920 5.10764 5.17456 5.20269 5.22774 5.38250 5.47456 5.58630 5.62734 5.69367 5.81728 6.16287 6.26128 6.34228 6.41172 6.92684 7.11571 7.42062 8.16183 8.41928 9.36772 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011573 B = 0.003830 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.942365 B = 7309.361306 C = 8502.862394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.091 4.091 4 H 0.076 0.924 5 C 0.130 3.870 6 N -0.586 5.586 7 C 0.586 3.414 8 O -0.556 6.556 9 C 0.081 3.919 10 N -0.445 5.445 11 C 0.091 3.909 12 C 0.084 3.916 13 N -0.408 5.408 14 C 0.041 3.959 15 C 0.564 3.436 16 N -0.807 5.807 17 O -0.545 6.545 18 C 0.136 3.864 19 C -0.139 4.139 20 C 0.177 3.823 21 H 0.052 0.948 22 N -0.722 5.722 23 C -0.230 4.230 24 H 0.075 0.925 25 C -0.070 4.070 26 N -0.968 5.968 27 Si 0.965 3.035 28 H -0.282 1.282 29 H -0.301 1.301 30 H -0.279 1.279 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.230 0.770 39 H 0.243 0.757 40 H 0.423 0.577 41 H 0.418 0.582 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.374 0.626 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.566 22.229 7.019 23.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.141 4.141 3 C -0.111 4.111 4 H 0.094 0.906 5 C 0.008 3.992 6 N -0.317 5.317 7 C 0.372 3.628 8 O -0.434 6.434 9 C -0.059 4.059 10 N -0.161 5.161 11 C -0.073 4.073 12 C -0.080 4.080 13 N -0.125 5.125 14 C -0.098 4.098 15 C 0.345 3.655 16 N -0.372 5.372 17 O -0.421 6.421 18 C 0.014 3.986 19 C -0.180 4.180 20 C 0.068 3.932 21 H 0.070 0.930 22 N -0.363 5.363 23 C -0.362 4.362 24 H 0.093 0.907 25 C -0.262 4.262 26 N -0.619 5.619 27 Si 0.795 3.205 28 H -0.209 1.209 29 H -0.228 1.228 30 H -0.206 1.206 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.246 0.754 39 H 0.259 0.741 40 H 0.255 0.745 41 H 0.251 0.749 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.207 0.793 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.460 21.316 7.040 22.887 hybrid contribution 0.850 -0.475 -0.423 1.062 sum -3.609 20.841 6.617 22.162 Atomic orbital electron populations 1.21782 0.94883 1.01979 1.01678 1.21328 0.95975 0.94713 1.02065 1.21554 0.95945 0.96637 0.96915 0.90563 1.21469 0.98534 0.81094 0.98118 1.47854 1.08528 1.06089 1.69226 1.17785 0.85945 0.83305 0.75785 1.90708 1.14601 1.85458 1.52596 1.21727 0.96318 0.95979 0.91860 1.68624 1.05807 1.20917 1.20786 1.25152 0.92331 0.87264 1.02598 1.25062 0.93102 1.02738 0.87115 1.68472 1.04984 1.13713 1.25287 1.21906 1.00187 0.92418 0.95314 1.17862 0.79822 0.84018 0.83820 1.43330 1.56323 1.23409 1.14126 1.90962 1.43117 1.25357 1.82661 1.21416 0.78730 0.99486 0.98983 1.22386 1.01432 0.98310 0.95843 1.20371 0.90868 0.90873 0.91110 0.93008 1.42554 1.18440 1.64132 1.11200 1.19528 0.94296 1.25525 0.96844 0.90680 1.25384 1.01809 1.03037 0.95975 1.69805 1.39664 1.49588 1.02797 0.85341 0.80836 0.78396 0.75921 1.20852 1.22815 1.20571 0.93417 0.91719 0.92254 0.93237 0.91607 0.89889 0.92627 0.75399 0.74110 0.74486 0.74868 0.92255 0.91361 0.90989 0.91748 0.79292 0.94357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 9.67 71.98 0.70 -3.62 16 2 C -0.10 -3.56 5.19 30.59 0.16 -3.40 16 3 C -0.09 -3.29 2.12 -10.86 -0.02 -3.31 16 4 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 5 C 0.13 5.10 5.02 86.22 0.43 5.53 16 6 N -0.59 -22.51 2.98 -822.64 -2.45 -24.96 16 7 C 0.59 23.07 5.24 86.92 0.46 23.52 16 8 O -0.56 -25.34 15.53 15.71 0.24 -25.10 16 9 C 0.08 2.56 4.50 42.16 0.19 2.75 16 10 N -0.44 -11.89 10.43 -183.37 -1.91 -13.80 16 11 C 0.09 1.25 11.23 84.88 0.95 2.20 16 12 C 0.08 0.82 11.23 84.88 0.95 1.77 16 13 N -0.41 -6.85 9.73 -183.38 -1.78 -8.63 16 14 C 0.04 1.05 6.78 42.16 0.29 1.34 16 15 C 0.56 15.22 8.06 86.92 0.70 15.92 16 16 N -0.81 -12.78 8.86 -175.30 -1.55 -14.34 16 17 O -0.54 -19.81 14.56 15.71 0.23 -19.58 16 18 C 0.14 4.97 6.07 86.36 0.52 5.49 16 19 C -0.14 -4.94 5.78 30.67 0.18 -4.76 16 20 C 0.18 6.96 2.53 45.02 0.11 7.08 16 21 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 22 N -0.72 -34.69 3.72 -322.83 -1.20 -35.89 16 23 C -0.23 -12.18 9.93 84.03 0.83 -11.34 16 24 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 25 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 26 N -0.97 -58.13 13.06 21.65 0.28 -57.85 16 27 Si 0.96 45.35 29.55 68.60 2.03 47.38 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 29 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 30 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 31 H 0.05 1.46 6.70 -2.39 -0.02 1.45 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.05 1.99 7.70 -2.39 -0.02 1.97 16 35 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.08 3.33 5.71 -2.38 -0.01 3.32 16 37 H 0.06 2.39 6.64 -2.39 -0.02 2.38 16 38 H 0.23 0.93 8.06 -2.91 -0.02 0.91 16 39 H 0.24 -0.52 8.06 -2.91 -0.02 -0.55 16 40 H 0.42 4.38 8.20 -92.70 -0.76 3.62 16 41 H 0.42 5.23 8.93 -92.71 -0.83 4.40 16 42 H 0.06 2.51 7.74 -2.39 -0.02 2.50 16 43 H 0.07 2.22 6.37 -2.39 -0.02 2.21 16 44 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 46 H 0.37 19.67 5.95 -92.70 -0.55 19.12 16 47 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -80.79 381.70 -0.29 -81.08 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -1.09 Total: 35.94 kcal Atomic # 6 Polarization: 28.84 SS G_CDS: 6.92 Total: 35.75 kcal Atomic # 7 Polarization: -146.85 SS G_CDS: -8.62 Total: -155.47 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: 0.47 Total: -44.68 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -80.79 -0.29 -81.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037986056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.140 kcal (2) G-P(sol) polarization free energy of solvation -80.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds