Wall clock time and date at job start Wed Apr 1 2020 04:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99884 * 2 1 4 4 C 1.52995 * 109.46732 * 125.00594 * 3 2 1 5 5 N 1.46504 * 109.47060 * 179.97438 * 4 3 2 6 6 C 1.34822 * 126.59470 * 125.26931 * 5 4 3 7 7 C 1.36595 * 106.83527 * 180.15261 * 6 5 4 8 8 C 1.47521 * 125.76655 * 179.89763 * 7 6 5 9 9 O 1.21594 * 120.00401 * 359.71438 * 8 7 6 10 10 N 1.34779 * 120.00214 * 179.71698 * 8 7 6 11 11 C 1.46491 * 120.00263 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.93471 * 328.64670 * 11 10 8 13 13 C 1.55055 * 110.87603 * 92.30359 * 11 10 8 14 14 O 1.44569 * 103.64427 * 81.55735 * 13 11 10 15 15 C 1.42965 * 106.78849 * 39.19938 * 14 13 11 16 16 C 1.53212 * 115.36513 * 104.67059 * 15 14 13 17 17 N 1.47713 * 85.90283 * 93.47455 * 16 15 14 18 18 C 1.36943 * 134.43732 * 204.09730 * 17 16 15 19 19 H 1.07990 * 120.00401 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99484 * 0.02973 * 18 17 16 21 21 N 1.31615 * 120.00231 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99814 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47424 * 90.00240 * 22 20 18 24 24 H 1.48504 * 109.47467 * 210.00501 * 22 20 18 25 25 H 1.48499 * 109.47189 * 330.00107 * 22 20 18 26 26 C 1.47714 * 91.13350 * 24.12377 * 17 16 15 27 27 C 1.53428 * 108.17449 * 334.25111 * 15 14 13 28 28 N 1.34396 * 108.46187 * 359.63412 * 7 6 5 29 29 N 1.28759 * 109.52570 * 0.22918 * 28 7 6 30 30 H 1.08006 * 119.99837 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00082 * 359.97438 * 1 2 3 32 32 H 1.07998 * 119.99899 * 180.02562 * 2 1 3 33 33 H 1.08995 * 109.46851 * 5.00103 * 3 2 1 34 34 H 1.09000 * 109.46718 * 245.00283 * 3 2 1 35 35 H 1.08995 * 109.47854 * 60.00123 * 4 3 2 36 36 H 1.09000 * 109.47265 * 299.99354 * 4 3 2 37 37 H 1.07994 * 126.57818 * 0.02562 * 6 5 4 38 38 H 0.97003 * 119.99741 * 0.02562 * 10 8 7 39 39 H 1.09000 * 110.58597 * 200.09723 * 13 11 10 40 40 H 1.08993 * 110.58432 * 322.86325 * 13 11 10 41 41 H 1.08997 * 113.80621 * 207.72703 * 16 15 14 42 42 H 1.09008 * 113.80538 * 339.22649 * 16 15 14 43 43 H 0.97001 * 120.00307 * 179.97438 * 21 20 18 44 44 H 1.09003 * 113.80450 * 221.63880 * 26 17 16 45 45 H 1.08995 * 113.91770 * 90.13638 * 26 17 16 46 46 H 1.09002 * 110.55368 * 120.19559 * 27 15 14 47 47 H 1.08999 * 110.55385 * 242.86787 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 7 3.7681 2.6015 1.1812 6 6 3.8538 3.4804 2.2000 7 6 4.6291 4.5170 1.7639 8 6 4.9907 5.7128 2.5485 9 8 4.5849 5.8381 3.6878 10 7 5.7710 6.6665 2.0024 11 6 6.1305 7.8537 2.7817 12 1 5.3371 8.1150 3.4820 13 6 7.4749 7.6408 3.5244 14 8 8.4706 7.9154 2.5129 15 6 7.9905 9.0263 1.7518 16 6 8.6770 10.3653 2.0403 17 7 9.5729 10.0275 0.9155 18 6 10.8433 10.3935 0.5585 19 1 11.2879 9.9936 -0.3408 20 6 11.5597 11.2785 1.3526 21 7 11.0181 11.7654 2.4489 22 14 13.2928 11.7771 0.8660 23 1 13.2368 12.9847 0.0035 24 1 14.0829 12.0772 2.0871 25 1 13.9368 10.6659 0.1206 26 6 8.5500 9.1375 0.3295 27 6 6.4595 9.0475 1.8495 28 7 5.0115 4.2607 0.5012 29 7 4.5191 3.1326 0.1231 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6212 1.4026 -0.9314 35 1 3.7400 0.5065 1.0919 36 1 2.4774 1.2355 2.1130 37 1 3.3956 3.3843 3.1732 38 1 6.0944 6.5668 1.0934 39 1 7.5690 8.3406 4.3549 40 1 7.5583 6.6135 3.8789 41 1 8.0445 11.2332 1.8537 42 1 9.1793 10.4029 3.0070 43 1 11.5187 12.3836 3.0040 44 1 8.9516 8.2019 -0.0596 45 1 7.8786 9.6361 -0.3696 46 1 6.1171 9.9834 2.2911 47 1 6.0112 8.9030 0.8665 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053951313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:39 Heat of formation + Delta-G solvation = 103.439002 kcal Electronic energy + Delta-G solvation = -29540.433918 eV Core-core repulsion = 25342.532246 eV Total energy + Delta-G solvation = -4197.901672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.50877 -40.19682 -38.91451 -36.93176 -36.10723 -34.40826 -34.02395 -32.02324 -31.48725 -30.56601 -29.56942 -28.01057 -25.66294 -25.13370 -24.87023 -24.11965 -22.19194 -22.02187 -21.08404 -20.53942 -20.39599 -18.93656 -18.35988 -16.71690 -16.63082 -16.59049 -16.48065 -15.93217 -15.38021 -15.11694 -15.01293 -14.90255 -14.73016 -14.36799 -13.95593 -13.77766 -13.57331 -13.28567 -13.26106 -13.02976 -12.67840 -12.48108 -12.16951 -11.93144 -11.79435 -11.54728 -11.42744 -11.36534 -11.27209 -11.04158 -10.79254 -10.75374 -10.42849 -10.38025 -10.10266 -10.04748 -9.69518 -9.60521 -9.46381 -9.18230 -8.74908 -8.59116 -6.79551 -5.67697 -2.98957 0.81012 1.46485 1.49917 1.74881 3.02795 3.15434 3.45542 3.50149 3.52512 3.82199 3.92120 4.07362 4.27915 4.29835 4.44432 4.52925 4.53794 4.59884 4.63680 4.74205 4.86127 5.07383 5.09260 5.22250 5.26164 5.30084 5.32788 5.33840 5.50392 5.57322 5.68438 5.88533 5.92862 5.97902 5.98524 6.05441 6.06135 6.14173 6.42139 6.48535 6.57791 6.69617 7.01604 7.29286 7.38524 7.59585 7.70460 7.79361 8.07342 8.08823 9.13222 9.79616 10.67523 11.49767 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.001790 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.976491 B =15638.914690 C =16224.795222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C -0.107 4.107 4 C 0.126 3.874 5 N -0.363 5.363 6 C 0.094 3.906 7 C -0.100 4.100 8 C 0.605 3.395 9 O -0.544 6.544 10 N -0.696 5.696 11 C 0.110 3.890 12 H 0.107 0.893 13 C 0.038 3.962 14 O -0.335 6.335 15 C 0.055 3.945 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.218 4.218 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.124 3.876 27 C -0.147 4.147 28 N -0.200 5.200 29 N -0.062 5.062 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.205 0.795 38 H 0.412 0.588 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.035 0.965 42 H 0.078 0.922 43 H 0.252 0.748 44 H 0.051 0.949 45 H 0.046 0.954 46 H 0.092 0.908 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.717 -22.540 -0.352 32.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.178 4.178 3 C -0.145 4.145 4 C 0.005 3.995 5 N -0.148 5.148 6 C -0.063 4.063 7 C -0.239 4.239 8 C 0.390 3.610 9 O -0.420 6.420 10 N -0.346 5.346 11 C 0.005 3.995 12 H 0.125 0.875 13 C -0.041 4.041 14 O -0.254 6.254 15 C 0.014 3.986 16 C 0.027 3.973 17 N -0.330 5.330 18 C -0.345 4.345 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.002 4.002 27 C -0.186 4.186 28 N -0.074 5.074 29 N -0.042 5.042 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.221 0.779 38 H 0.248 0.752 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.052 0.948 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.111 0.889 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.000 -22.623 -0.972 32.275 hybrid contribution 0.479 0.386 0.342 0.704 sum -22.520 -22.237 -0.630 31.655 Atomic orbital electron populations 1.23975 0.95888 1.02352 0.99399 1.22736 0.96017 0.97633 1.01427 1.21027 0.97993 0.96815 0.98628 1.22045 0.94484 0.81369 1.01588 1.50577 1.35818 1.17556 1.10838 1.23384 0.98344 0.89274 0.95328 1.21481 1.08583 1.00260 0.93594 1.16748 0.78221 0.80952 0.85118 1.90804 1.55582 1.78222 1.17436 1.45746 1.50179 1.20228 1.18456 1.22614 0.98283 0.84417 0.94185 0.87507 1.23952 0.86444 1.01607 0.92060 1.88871 1.42498 1.48840 1.45146 1.23827 0.89448 0.90414 0.94922 1.22659 0.89363 0.90189 0.95050 1.45778 1.10281 1.51792 1.25181 1.18998 0.87606 1.21497 1.06430 0.90266 1.24752 0.98561 0.99751 0.97429 1.69810 1.36891 1.35158 1.15104 0.86121 0.84117 0.78336 0.77205 1.21725 1.21680 1.20654 1.22692 0.90799 0.94559 0.92141 1.23160 0.97347 0.97776 1.00359 1.74683 1.14932 1.07548 1.10252 1.82004 1.08896 1.04962 1.08364 0.87967 0.88367 0.86666 0.90525 0.88953 0.88068 0.87499 0.77853 0.75198 0.91103 0.89375 0.94784 0.90370 0.93762 0.93089 0.93705 0.88905 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.56 14.32 29.01 0.42 -0.15 16 2 C -0.16 -0.49 9.52 -36.03 -0.34 -0.83 16 3 C -0.11 -0.42 5.86 -27.88 -0.16 -0.58 16 4 C 0.13 0.45 6.52 -4.04 -0.03 0.42 16 5 N -0.36 -2.78 3.69 -61.06 -0.23 -3.00 16 6 C 0.09 0.77 11.27 -16.83 -0.19 0.58 16 7 C -0.10 -1.16 6.99 -83.55 -0.58 -1.74 16 8 C 0.61 8.00 7.82 -12.48 -0.10 7.90 16 9 O -0.54 -8.15 16.51 5.28 0.09 -8.07 16 10 N -0.70 -9.13 5.14 -52.78 -0.27 -9.40 16 11 C 0.11 1.50 3.51 -65.79 -0.23 1.27 16 12 H 0.11 1.38 7.55 -51.93 -0.39 0.99 16 13 C 0.04 0.60 7.42 38.24 0.28 0.88 16 14 O -0.34 -6.83 11.29 -35.23 -0.40 -7.23 16 15 C 0.06 1.07 1.53 -90.29 -0.14 0.93 16 16 C 0.15 3.68 6.90 -3.27 -0.02 3.65 16 17 N -0.60 -16.14 3.70 -181.59 -0.67 -16.82 16 18 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 19 H 0.08 2.24 7.83 -52.49 -0.41 1.82 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -28.12 11.39 55.49 0.63 -27.49 16 22 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 26 C 0.12 2.63 8.34 -3.26 -0.03 2.60 16 27 C -0.15 -2.12 6.12 -25.45 -0.16 -2.27 16 28 N -0.20 -2.53 12.04 32.84 0.40 -2.13 16 29 N -0.06 -0.69 13.65 60.35 0.82 0.13 16 30 H 0.10 0.23 8.06 -52.48 -0.42 -0.19 16 31 H 0.10 0.30 7.84 -52.49 -0.41 -0.11 16 32 H 0.12 0.24 8.06 -52.49 -0.42 -0.19 16 33 H 0.08 0.34 7.79 -51.93 -0.40 -0.06 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.11 0.12 8.08 -51.93 -0.42 -0.30 16 37 H 0.20 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.41 5.31 8.32 -40.82 -0.34 4.97 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 42 H 0.08 2.12 7.18 -51.92 -0.37 1.75 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 46 H 0.09 1.23 7.89 -51.93 -0.41 0.82 16 47 H 0.08 1.08 7.82 -51.93 -0.41 0.67 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -36.58 400.26 -7.08 -43.66 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.92 Total: 0.66 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.54 Total: 5.79 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.68 Total: -58.71 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.31 Total: -15.30 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.58 -7.08 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053951313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.099 kcal (2) G-P(sol) polarization free energy of solvation -36.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds