Wall clock time and date at job start Wed Apr 1 2020 04:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 119.99877 * 2 1 4 4 C 1.53007 * 109.46992 * 124.99989 * 3 2 1 5 5 N 1.46492 * 109.47121 * 179.97438 * 4 3 2 6 6 C 1.34819 * 126.59617 * 124.99664 * 5 4 3 7 7 C 1.36590 * 106.84341 * 180.02562 * 6 5 4 8 8 C 1.47521 * 125.77038 * 180.02562 * 7 6 5 9 9 O 1.21592 * 120.00486 * 0.27219 * 8 7 6 10 10 N 1.34784 * 119.99834 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.45152 * 32.39643 * 11 10 8 13 13 C 1.54549 * 110.50803 * 269.65634 * 11 10 8 14 14 O 1.44643 * 105.02908 * 217.71757 * 13 11 10 15 15 C 1.43249 * 105.22217 * 39.02808 * 14 13 11 16 16 C 1.52884 * 115.83952 * 90.92089 * 15 14 13 17 17 N 1.47786 * 85.78317 * 94.50824 * 16 15 14 18 18 C 1.36928 * 134.40424 * 203.86941 * 17 16 15 19 19 H 1.08006 * 120.00181 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00245 * 0.02562 * 18 17 16 21 21 N 1.31621 * 119.99896 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00173 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47237 * 59.99828 * 22 20 18 24 24 H 1.48499 * 109.46954 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47081 * 299.99553 * 22 20 18 26 26 C 1.47787 * 91.19314 * 23.87549 * 17 16 15 27 27 C 1.53466 * 106.25970 * 321.05912 * 15 14 13 28 28 N 1.34405 * 108.45944 * 0.26739 * 7 6 5 29 29 N 1.28764 * 109.51667 * 359.54967 * 28 7 6 30 30 H 1.08007 * 120.00228 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00360 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.00247 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47327 * 5.00224 * 3 2 1 34 34 H 1.08998 * 109.47363 * 244.99847 * 3 2 1 35 35 H 1.08996 * 109.46893 * 59.99969 * 4 3 2 36 36 H 1.08998 * 109.46951 * 300.00111 * 4 3 2 37 37 H 1.08005 * 126.57322 * 359.97438 * 6 5 4 38 38 H 0.96999 * 120.00044 * 359.97438 * 10 8 7 39 39 H 1.08999 * 110.33122 * 336.60514 * 13 11 10 40 40 H 1.09003 * 110.33212 * 98.83034 * 13 11 10 41 41 H 1.09001 * 113.82482 * 208.72672 * 16 15 14 42 42 H 1.09010 * 113.82269 * 340.29464 * 16 15 14 43 43 H 0.96998 * 120.00091 * 180.02562 * 21 20 18 44 44 H 1.08995 * 113.82173 * 221.90842 * 26 17 16 45 45 H 1.08995 * 113.82232 * 90.33868 * 26 17 16 46 46 H 1.09000 * 110.57808 * 264.15485 * 27 15 14 47 47 H 1.09004 * 110.70114 * 141.33599 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 7 3.7679 2.6015 1.1814 6 6 3.8494 3.4829 2.1982 7 6 4.6288 4.5172 1.7640 8 6 4.9901 5.7131 2.5485 9 8 4.5883 5.8360 3.6895 10 7 5.7697 6.6673 2.0021 11 6 6.1280 7.8552 2.7809 12 1 6.2125 7.6059 3.8387 13 6 5.0866 8.9770 2.5676 14 8 5.8552 10.2019 2.5395 15 6 7.0501 9.8797 1.8182 16 6 6.9988 10.1091 0.3075 17 7 7.5979 11.4286 0.5974 18 6 7.6210 12.6339 -0.0520 19 1 8.1457 13.4717 0.3831 20 6 6.9701 12.7790 -1.2694 21 7 6.3311 11.7578 -1.7998 22 14 7.0011 14.4235 -2.1550 23 1 8.4066 14.7990 -2.4526 24 1 6.2384 14.3164 -3.4246 25 1 6.3833 15.4621 -1.2920 26 6 8.1621 10.9277 1.8682 27 6 7.4510 8.4660 2.2605 28 7 5.0065 4.2636 0.4993 29 7 4.5189 3.1327 0.1233 30 1 -0.5401 -0.9353 -0.0004 31 1 -0.5401 0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6212 1.4026 -0.9313 35 1 3.7399 0.5066 1.0921 36 1 2.4772 1.2355 2.1130 37 1 3.3864 3.3895 3.1695 38 1 6.0934 6.5674 1.0932 39 1 4.5656 8.8350 1.6207 40 1 4.3750 8.9952 3.3931 41 1 7.6501 9.4452 -0.2610 42 1 5.9874 10.1637 -0.0955 43 1 5.8766 11.8591 -2.6507 44 1 8.0694 11.6287 2.6977 45 1 9.1645 10.5109 1.7708 46 1 8.1926 8.5099 3.0581 47 1 7.8320 7.8915 1.4160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053951314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:42 Heat of formation + Delta-G solvation = 104.160545 kcal Electronic energy + Delta-G solvation = -29586.202910 eV Core-core repulsion = 25388.332526 eV Total energy + Delta-G solvation = -4197.870383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.48842 -40.19611 -38.96932 -36.90047 -36.07311 -34.49535 -34.09085 -32.02782 -31.46183 -30.48110 -29.51350 -27.97582 -25.80099 -25.09524 -24.86516 -24.06728 -22.16980 -22.07660 -21.03174 -20.52972 -20.42314 -18.97786 -18.35071 -16.70712 -16.67005 -16.49796 -16.38207 -15.88528 -15.18674 -15.16699 -15.08010 -14.89349 -14.72288 -14.38698 -14.23967 -13.78499 -13.53872 -13.26823 -13.05471 -12.92864 -12.67048 -12.45837 -12.13769 -12.08505 -11.75715 -11.61294 -11.54895 -11.46289 -11.09610 -11.04343 -10.77230 -10.73168 -10.42743 -10.32645 -10.10587 -10.01158 -9.73380 -9.58131 -9.45667 -9.04712 -8.81833 -8.73756 -6.81705 -5.68813 -3.00484 0.83038 1.48845 1.52767 1.77564 3.03088 3.16440 3.45689 3.49148 3.50639 3.84328 3.93730 4.10316 4.30967 4.35257 4.48476 4.52482 4.56684 4.62005 4.65745 4.77313 4.89200 5.03312 5.12551 5.21249 5.29460 5.30976 5.34557 5.45697 5.49716 5.54124 5.67151 5.92817 5.96117 6.01032 6.06212 6.07169 6.09877 6.15412 6.41113 6.43556 6.57433 6.65306 7.01822 7.25815 7.37977 7.54529 7.71528 7.72644 8.05117 8.09578 9.11521 9.78100 10.65257 11.48515 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.002002 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.100917 B =13983.440737 C =15226.556026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C -0.108 4.108 4 C 0.126 3.874 5 N -0.363 5.363 6 C 0.094 3.906 7 C -0.101 4.101 8 C 0.606 3.394 9 O -0.542 6.542 10 N -0.701 5.701 11 C 0.114 3.886 12 H 0.103 0.897 13 C 0.037 3.963 14 O -0.335 6.335 15 C 0.055 3.945 16 C 0.153 3.847 17 N -0.605 5.605 18 C -0.219 4.219 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.129 3.871 27 C -0.147 4.147 28 N -0.200 5.200 29 N -0.061 5.061 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.205 0.795 38 H 0.412 0.588 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.253 0.747 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.085 0.915 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 -26.985 8.736 29.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.178 4.178 3 C -0.146 4.146 4 C 0.006 3.994 5 N -0.148 5.148 6 C -0.063 4.063 7 C -0.240 4.240 8 C 0.390 3.610 9 O -0.418 6.418 10 N -0.352 5.352 11 C 0.009 3.991 12 H 0.121 0.879 13 C -0.041 4.041 14 O -0.252 6.252 15 C 0.014 3.986 16 C 0.027 3.973 17 N -0.331 5.331 18 C -0.347 4.347 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.003 3.997 27 C -0.186 4.186 28 N -0.074 5.074 29 N -0.041 5.041 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.221 0.779 38 H 0.248 0.752 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.053 0.947 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.103 0.897 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.178 -26.663 7.943 28.998 hybrid contribution -0.246 0.503 -0.201 0.595 sum -8.424 -26.160 7.742 28.553 Atomic orbital electron populations 1.23982 0.95901 1.02377 0.99315 1.22725 0.96013 0.97595 1.01510 1.21037 0.98039 0.96855 0.98619 1.22041 0.94471 0.81320 1.01611 1.50578 1.35797 1.17491 1.10922 1.23383 0.98211 0.89333 0.95391 1.21476 1.08739 1.00258 0.93514 1.16757 0.78266 0.80817 0.85132 1.90805 1.54878 1.78735 1.17418 1.45883 1.50871 1.20025 1.18437 1.22495 0.95073 0.84530 0.96967 0.87858 1.23798 0.94340 0.83890 1.02071 1.89032 1.31431 1.30204 1.74542 1.23766 0.87291 0.91596 0.95944 1.22597 0.99542 0.85888 0.89247 1.45824 1.60014 1.06886 1.20385 1.18951 1.28356 0.86452 1.00944 0.90257 1.24768 1.00461 0.97697 0.97578 1.69800 1.38420 1.29338 1.19389 0.86191 0.77426 0.83143 0.78947 1.21238 1.21620 1.21100 1.22516 0.93382 0.92862 0.90923 1.23044 0.96266 0.97283 1.02041 1.74696 1.15250 1.07404 1.10033 1.82010 1.09080 1.04781 1.08274 0.87978 0.88325 0.86700 0.90460 0.88927 0.88098 0.87512 0.77853 0.75152 0.91814 0.89066 0.94731 0.90454 0.93670 0.92884 0.93445 0.89677 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.66 14.32 29.02 0.42 -0.24 16 2 C -0.16 -0.56 9.52 -36.03 -0.34 -0.90 16 3 C -0.11 -0.48 5.86 -27.88 -0.16 -0.64 16 4 C 0.13 0.48 6.52 -4.04 -0.03 0.46 16 5 N -0.36 -2.87 3.69 -61.06 -0.23 -3.09 16 6 C 0.09 0.79 11.27 -16.83 -0.19 0.60 16 7 C -0.10 -1.19 6.99 -83.55 -0.58 -1.77 16 8 C 0.61 8.11 7.82 -12.47 -0.10 8.02 16 9 O -0.54 -8.26 16.51 5.28 0.09 -8.17 16 10 N -0.70 -9.25 5.08 -53.17 -0.27 -9.52 16 11 C 0.11 1.62 3.49 -66.20 -0.23 1.39 16 12 H 0.10 1.43 7.55 -51.93 -0.39 1.04 16 13 C 0.04 0.62 7.37 37.97 0.28 0.90 16 14 O -0.33 -6.89 11.44 -35.23 -0.40 -7.30 16 15 C 0.06 1.08 1.28 -90.66 -0.12 0.97 16 16 C 0.15 3.67 6.99 -3.40 -0.02 3.64 16 17 N -0.60 -16.13 3.71 -183.59 -0.68 -16.81 16 18 C -0.22 -6.39 10.70 -15.06 -0.16 -6.55 16 19 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -28.12 11.40 55.49 0.63 -27.49 16 22 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.13 2.74 8.47 -3.40 -0.03 2.71 16 27 C -0.15 -2.16 6.24 -25.58 -0.16 -2.32 16 28 N -0.20 -2.58 12.04 32.85 0.40 -2.19 16 29 N -0.06 -0.70 13.65 60.35 0.82 0.12 16 30 H 0.10 0.28 8.06 -52.48 -0.42 -0.14 16 31 H 0.10 0.37 7.84 -52.49 -0.41 -0.04 16 32 H 0.12 0.27 8.06 -52.48 -0.42 -0.15 16 33 H 0.08 0.40 7.79 -51.93 -0.40 0.00 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.11 0.15 8.08 -51.93 -0.42 -0.27 16 37 H 0.20 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.41 5.24 8.07 -40.82 -0.33 4.91 16 39 H 0.06 1.11 8.06 -51.93 -0.42 0.69 16 40 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.04 0.82 7.96 -51.93 -0.41 0.41 16 42 H 0.08 2.10 7.20 -51.92 -0.37 1.73 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 47 H 0.09 1.18 7.40 -51.93 -0.38 0.79 16 LS Contribution 399.82 15.07 6.03 6.03 Total: -1.00 -36.41 399.82 -7.06 -43.47 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.90 Total: 1.23 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.53 Total: 5.90 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.68 Total: -58.98 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.32 Total: -15.47 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.41 -7.06 -43.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053951314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.631 kcal (2) G-P(sol) polarization free energy of solvation -36.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds