Wall clock time and date at job start Wed Apr 1 2020 04:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 119.99877 * 2 1 4 4 C 1.53007 * 109.46992 * 124.99989 * 3 2 1 5 5 N 1.46492 * 109.47121 * 179.97438 * 4 3 2 6 6 C 1.34819 * 126.59617 * 124.99664 * 5 4 3 7 7 C 1.36590 * 106.84341 * 180.02562 * 6 5 4 8 8 C 1.47521 * 125.77038 * 180.02562 * 7 6 5 9 9 O 1.21592 * 120.00486 * 0.27219 * 8 7 6 10 10 N 1.34784 * 119.99834 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.45152 * 32.39643 * 11 10 8 13 13 C 1.54549 * 110.50803 * 269.65634 * 11 10 8 14 14 O 1.44643 * 105.02908 * 217.71757 * 13 11 10 15 15 C 1.43249 * 105.22217 * 39.02808 * 14 13 11 16 16 C 1.52884 * 115.83952 * 90.92089 * 15 14 13 17 17 N 1.47786 * 85.78317 * 94.50824 * 16 15 14 18 18 C 1.36928 * 134.40424 * 203.86941 * 17 16 15 19 19 H 1.08006 * 120.00181 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00245 * 0.02562 * 18 17 16 21 21 N 1.31621 * 119.99896 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00173 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47237 * 59.99828 * 22 20 18 24 24 H 1.48499 * 109.46954 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47081 * 299.99553 * 22 20 18 26 26 C 1.47787 * 91.19314 * 23.87549 * 17 16 15 27 27 C 1.53466 * 106.25970 * 321.05912 * 15 14 13 28 28 N 1.34405 * 108.45944 * 0.26739 * 7 6 5 29 29 N 1.28764 * 109.51667 * 359.54967 * 28 7 6 30 30 H 1.08007 * 120.00228 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00360 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.00247 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47327 * 5.00224 * 3 2 1 34 34 H 1.08998 * 109.47363 * 244.99847 * 3 2 1 35 35 H 1.08996 * 109.46893 * 59.99969 * 4 3 2 36 36 H 1.08998 * 109.46951 * 300.00111 * 4 3 2 37 37 H 1.08005 * 126.57322 * 359.97438 * 6 5 4 38 38 H 0.96999 * 120.00044 * 359.97438 * 10 8 7 39 39 H 1.08999 * 110.33122 * 336.60514 * 13 11 10 40 40 H 1.09003 * 110.33212 * 98.83034 * 13 11 10 41 41 H 1.09001 * 113.82482 * 208.72672 * 16 15 14 42 42 H 1.09010 * 113.82269 * 340.29464 * 16 15 14 43 43 H 0.96998 * 120.00091 * 180.02562 * 21 20 18 44 44 H 1.08995 * 113.82173 * 221.90842 * 26 17 16 45 45 H 1.08995 * 113.82232 * 90.33868 * 26 17 16 46 46 H 1.09000 * 110.57808 * 264.15485 * 27 15 14 47 47 H 1.09004 * 110.70114 * 141.33599 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 7 3.7679 2.6015 1.1814 6 6 3.8494 3.4829 2.1982 7 6 4.6288 4.5172 1.7640 8 6 4.9901 5.7131 2.5485 9 8 4.5883 5.8360 3.6895 10 7 5.7697 6.6673 2.0021 11 6 6.1280 7.8552 2.7809 12 1 6.2125 7.6059 3.8387 13 6 5.0866 8.9770 2.5676 14 8 5.8552 10.2019 2.5395 15 6 7.0501 9.8797 1.8182 16 6 6.9988 10.1091 0.3075 17 7 7.5979 11.4286 0.5974 18 6 7.6210 12.6339 -0.0520 19 1 8.1457 13.4717 0.3831 20 6 6.9701 12.7790 -1.2694 21 7 6.3311 11.7578 -1.7998 22 14 7.0011 14.4235 -2.1550 23 1 8.4066 14.7990 -2.4526 24 1 6.2384 14.3164 -3.4246 25 1 6.3833 15.4621 -1.2920 26 6 8.1621 10.9277 1.8682 27 6 7.4510 8.4660 2.2605 28 7 5.0065 4.2636 0.4993 29 7 4.5189 3.1327 0.1233 30 1 -0.5401 -0.9353 -0.0004 31 1 -0.5401 0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6212 1.4026 -0.9313 35 1 3.7399 0.5066 1.0921 36 1 2.4772 1.2355 2.1130 37 1 3.3864 3.3895 3.1695 38 1 6.0934 6.5674 1.0932 39 1 4.5656 8.8350 1.6207 40 1 4.3750 8.9952 3.3931 41 1 7.6501 9.4452 -0.2610 42 1 5.9874 10.1637 -0.0955 43 1 5.8766 11.8591 -2.6507 44 1 8.0694 11.6287 2.6977 45 1 9.1645 10.5109 1.7708 46 1 8.1926 8.5099 3.0581 47 1 7.8320 7.8915 1.4160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053951314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:41 Heat of formation + Delta-G solvation = 76.995489 kcal Electronic energy + Delta-G solvation = -29587.380875 eV Core-core repulsion = 25388.332526 eV Total energy + Delta-G solvation = -4199.048348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.24904 -41.59313 -40.19419 -37.72134 -37.31738 -35.66857 -34.69942 -34.12870 -32.36188 -31.49040 -30.30909 -29.59055 -27.54145 -26.65608 -25.59737 -25.03486 -23.85123 -22.81133 -22.22993 -21.47649 -20.75886 -20.61850 -19.17426 -18.72507 -17.59333 -17.33550 -17.18652 -16.95844 -16.64259 -16.43027 -16.25032 -15.99306 -15.76518 -15.56372 -15.30153 -14.96780 -14.68314 -14.60596 -14.21956 -13.96142 -13.67480 -13.61863 -13.18884 -13.12073 -13.01838 -12.92939 -12.71653 -12.65867 -12.62490 -12.30642 -12.17048 -12.02862 -11.78548 -11.63870 -11.33441 -11.31081 -11.23870 -10.90587 -10.53932 -10.42933 -10.28634 -10.06084 -8.91770 -7.89221 -5.22018 0.14384 0.59264 1.04165 1.40909 1.43636 1.48266 1.53976 2.02287 2.20053 2.47613 2.89524 3.16896 3.28896 3.36671 3.42421 3.55328 3.71638 3.76536 3.78816 3.84226 3.94908 4.04624 4.14174 4.22094 4.22945 4.37297 4.40591 4.59963 4.64007 4.71858 4.75141 4.81694 4.85800 4.91241 4.94229 4.97545 4.98401 5.06945 5.15839 5.24105 5.43495 5.44594 5.50917 5.72280 5.82838 5.93058 6.11910 6.36044 6.88047 6.91977 7.08110 7.61194 8.55723 9.27537 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.002002 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.100917 B =13983.440737 C =15226.556026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C -0.104 4.104 4 C 0.119 3.881 5 N -0.349 5.349 6 C 0.114 3.886 7 C -0.127 4.127 8 C 0.610 3.390 9 O -0.561 6.561 10 N -0.700 5.700 11 C 0.128 3.872 12 H 0.117 0.883 13 C 0.034 3.966 14 O -0.364 6.364 15 C 0.072 3.928 16 C 0.150 3.850 17 N -0.640 5.640 18 C -0.234 4.234 19 H 0.084 0.916 20 C -0.071 4.071 21 N -0.955 5.955 22 Si 0.981 3.019 23 H -0.274 1.274 24 H -0.294 1.294 25 H -0.278 1.278 26 C 0.129 3.871 27 C -0.133 4.133 28 N -0.227 5.227 29 N -0.087 5.087 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.141 0.859 37 H 0.240 0.760 38 H 0.414 0.586 39 H 0.047 0.953 40 H 0.105 0.895 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.247 0.753 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.959 -28.864 10.561 31.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.176 4.176 3 C -0.142 4.142 4 C 0.000 4.000 5 N -0.134 5.134 6 C -0.044 4.044 7 C -0.267 4.267 8 C 0.395 3.605 9 O -0.440 6.440 10 N -0.351 5.351 11 C 0.023 3.977 12 H 0.135 0.865 13 C -0.044 4.044 14 O -0.282 6.282 15 C 0.031 3.969 16 C 0.025 3.975 17 N -0.367 5.367 18 C -0.362 4.362 19 H 0.101 0.899 20 C -0.264 4.264 21 N -0.604 5.604 22 Si 0.808 3.192 23 H -0.200 1.200 24 H -0.220 1.220 25 H -0.204 1.204 26 C 0.004 3.996 27 C -0.172 4.172 28 N -0.101 5.101 29 N -0.068 5.068 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.148 0.852 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.137 0.863 36 H 0.159 0.841 37 H 0.257 0.743 38 H 0.250 0.750 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.134 0.866 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.897 -28.581 9.777 31.222 hybrid contribution -0.420 1.003 -0.726 1.308 sum -8.317 -27.578 9.050 30.193 Atomic orbital electron populations 1.24103 0.96145 1.02689 0.99359 1.22759 0.95920 0.97527 1.01390 1.20964 0.97849 0.97200 0.98226 1.22491 0.94702 0.79938 1.02858 1.50849 1.34556 1.18129 1.09819 1.23894 0.96349 0.87865 0.96288 1.21455 1.10759 1.00910 0.93609 1.16918 0.77588 0.81038 0.84938 1.90784 1.55649 1.79307 1.18214 1.45859 1.51046 1.19760 1.18462 1.22312 0.93707 0.83981 0.97697 0.86539 1.23943 0.94968 0.83673 1.01787 1.88996 1.32301 1.32652 1.74244 1.23405 0.86729 0.94168 0.92554 1.22534 0.97004 0.85398 0.92587 1.46247 1.61232 1.07008 1.22218 1.19385 1.27649 0.87952 1.01210 0.89869 1.25659 1.00729 1.01332 0.98682 1.70011 1.39610 1.31337 1.19427 0.85121 0.77761 0.78963 0.77314 1.19956 1.22040 1.20450 1.22762 0.95083 0.93158 0.88580 1.22979 0.97104 0.93682 1.03443 1.74667 1.16308 1.08272 1.10837 1.81929 1.10263 1.04801 1.09772 0.86985 0.88847 0.85206 0.91516 0.90685 0.86294 0.84119 0.74339 0.74967 0.93491 0.87712 0.94653 0.94704 0.94408 0.92647 0.90329 0.86566 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.10 14.32 67.78 0.97 -0.13 16 2 C -0.16 -0.81 9.52 25.65 0.24 -0.57 16 3 C -0.10 -0.80 5.86 29.85 0.17 -0.62 16 4 C 0.12 0.59 6.52 86.38 0.56 1.15 16 5 N -0.35 -4.86 3.69 -347.11 -1.28 -6.14 16 6 C 0.11 1.67 11.27 83.85 0.95 2.62 16 7 C -0.13 -2.88 6.99 40.81 0.29 -2.59 16 8 C 0.61 15.66 7.82 86.69 0.68 16.33 16 9 O -0.56 -16.17 16.51 -4.00 -0.07 -16.24 16 10 N -0.70 -17.89 5.08 -440.40 -2.24 -20.13 16 11 C 0.13 3.43 3.49 46.11 0.16 3.59 16 12 H 0.12 2.91 7.55 -2.39 -0.02 2.90 16 13 C 0.03 1.13 7.37 72.51 0.53 1.66 16 14 O -0.36 -15.00 11.44 -148.98 -1.70 -16.71 16 15 C 0.07 2.80 1.28 -10.66 -0.01 2.79 16 16 C 0.15 7.42 6.99 86.09 0.60 8.02 16 17 N -0.64 -34.63 3.71 -741.03 -2.75 -37.37 16 18 C -0.23 -13.82 10.70 84.04 0.90 -12.92 16 19 H 0.08 4.68 7.83 -2.91 -0.02 4.66 16 20 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 21 N -0.95 -60.34 11.40 21.65 0.25 -60.09 16 22 Si 0.98 47.85 29.55 68.60 2.03 49.87 16 23 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 26 C 0.13 5.31 8.47 86.09 0.73 6.04 16 27 C -0.13 -3.61 6.24 31.34 0.20 -3.42 16 28 N -0.23 -5.86 12.04 -50.00 -0.60 -6.46 16 29 N -0.09 -1.97 13.65 37.02 0.51 -1.47 16 30 H 0.11 0.43 8.06 -2.91 -0.02 0.41 16 31 H 0.09 0.63 7.84 -2.91 -0.02 0.61 16 32 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 33 H 0.07 0.65 7.79 -2.39 -0.02 0.63 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.14 -0.19 8.08 -2.39 -0.02 -0.21 16 37 H 0.24 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.41 10.44 8.07 -92.71 -0.75 9.70 16 39 H 0.05 1.69 8.06 -2.39 -0.02 1.67 16 40 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.04 1.72 7.96 -2.39 -0.02 1.70 16 42 H 0.03 1.99 7.20 -2.38 -0.02 1.97 16 43 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 46 H 0.12 2.53 8.12 -2.39 -0.02 2.51 16 47 H 0.10 2.47 7.40 -2.38 -0.02 2.45 16 Total: -1.00 -82.10 399.82 1.82 -80.28 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.24 Total: 16.30 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 7.44 Total: 18.15 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -6.12 Total: -131.66 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.77 Total: -32.95 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.87 kcal Total: -82.10 1.82 -80.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053951314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.277 kcal (2) G-P(sol) polarization free energy of solvation -82.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds