Wall clock time and date at job start Wed Apr 1 2020 04:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 C 1.50702 * 109.46960 * 120.00265 * 2 1 3 5 5 O 1.21277 * 119.99761 * 116.93982 * 4 2 1 6 6 N 1.34774 * 119.99799 * 296.93340 * 4 2 1 7 7 C 1.47742 * 121.65190 * 351.82678 * 6 4 2 8 8 C 1.53012 * 108.78874 * 271.25738 * 7 6 4 9 9 C 1.50704 * 109.44435 * 304.76716 * 8 7 6 10 10 O 1.21279 * 120.23454 * 296.12111 * 9 8 7 11 11 N 1.35501 * 119.52088 * 116.09862 * 9 8 7 12 12 C 1.47130 * 118.10477 * 180.29642 * 11 9 8 13 13 C 1.53012 * 109.09114 * 99.92888 * 12 11 9 14 14 N 1.47764 * 108.79402 * 301.48022 * 13 12 11 15 15 C 1.36940 * 121.64706 * 276.63589 * 14 13 12 16 16 H 1.07999 * 119.99690 * 30.57642 * 15 14 13 17 17 C 1.38807 * 120.00375 * 210.58707 * 15 14 13 18 18 N 1.31622 * 119.99910 * 10.19386 * 17 15 14 19 19 Si 1.86799 * 120.00072 * 190.19986 * 17 15 14 20 20 H 1.48499 * 109.46937 * 89.99910 * 19 17 15 21 21 H 1.48505 * 109.47023 * 209.99601 * 19 17 15 22 22 H 1.48499 * 109.47205 * 329.99590 * 19 17 15 23 23 C 1.47745 * 116.71268 * 96.90420 * 14 13 12 24 24 C 1.47775 * 121.64696 * 171.84970 * 6 4 2 25 25 C 1.52994 * 109.46794 * 240.00076 * 2 1 3 26 26 F 1.39897 * 109.47510 * 299.99969 * 25 2 1 27 27 F 1.39905 * 109.47144 * 60.00021 * 25 2 1 28 28 H 1.09006 * 109.46680 * 290.95310 * 1 2 3 29 29 H 1.08993 * 109.47041 * 50.95022 * 1 2 3 30 30 H 1.09002 * 109.47019 * 170.95724 * 1 2 3 31 31 H 1.08998 * 109.46857 * 153.06919 * 3 2 1 32 32 H 1.08996 * 109.46855 * 273.07494 * 3 2 1 33 33 H 1.09000 * 109.46701 * 33.07401 * 3 2 1 34 34 H 1.09004 * 109.58216 * 151.47083 * 7 6 4 35 35 H 1.09002 * 109.70421 * 31.12346 * 7 6 4 36 36 H 1.08997 * 109.48030 * 184.77186 * 8 7 6 37 37 H 1.09005 * 109.48060 * 64.75580 * 8 7 6 38 38 H 0.97000 * 120.94511 * 0.32539 * 11 9 8 39 39 H 1.08995 * 109.53406 * 340.04535 * 12 11 9 40 40 H 1.08993 * 109.59434 * 219.85101 * 12 11 9 41 41 H 1.09002 * 109.57918 * 181.68701 * 13 12 11 42 42 H 1.09000 * 109.69546 * 61.34361 * 13 12 11 43 43 H 0.97003 * 120.00014 * 180.02562 * 18 17 15 44 44 H 1.08997 * 109.57882 * 345.18570 * 23 14 13 45 45 H 1.08998 * 109.57827 * 105.58494 * 23 14 13 46 46 H 1.08993 * 109.58181 * 170.34435 * 24 6 4 47 47 H 1.08996 * 109.58386 * 290.62242 * 24 6 4 48 48 H 1.09006 * 109.47234 * 179.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.6831 -1.7279 1.1200 6 7 1.7585 -0.2151 2.4536 7 6 1.1261 1.1084 2.6302 8 6 2.2227 2.1732 2.6996 9 6 3.1988 1.8178 3.7915 10 8 2.8354 1.7837 4.9481 11 7 4.4850 1.5363 3.4717 12 6 5.4097 1.1868 4.5614 13 6 5.5698 -0.3341 4.6135 14 7 4.2411 -0.9457 4.8229 15 6 3.6940 -1.0651 6.0725 16 1 3.9263 -0.3370 6.8355 17 6 2.8410 -2.1221 6.3587 18 7 2.7137 -3.1150 5.5041 19 14 1.8735 -2.1353 7.9566 20 1 0.5665 -1.4616 7.7494 21 1 1.6446 -3.5387 8.3851 22 1 2.6403 -1.4163 9.0055 23 6 3.5345 -1.4277 3.6182 24 6 2.0764 -0.9687 3.6843 25 6 2.0400 -0.7212 -1.2492 26 9 1.5737 -2.0402 -1.2493 27 9 1.5736 -0.0617 -2.3915 28 1 -0.3633 0.3675 0.9598 29 1 -0.3633 0.6474 -0.7980 30 1 -0.3633 -1.0149 -0.1615 31 1 3.0250 1.4796 0.4654 32 1 2.1092 1.8034 -1.0262 33 1 1.3493 2.0720 0.5608 34 1 0.5493 1.1171 3.5551 35 1 0.4675 1.3165 1.7870 36 1 1.7744 3.1432 2.9145 37 1 2.7465 2.2185 1.7447 38 1 4.7876 1.5648 2.5505 39 1 5.0072 1.5435 5.5094 40 1 6.3798 1.6494 4.3802 41 1 6.2302 -0.6039 5.4376 42 1 5.9926 -0.6913 3.6744 43 1 2.1173 -3.8535 5.7039 44 1 4.0074 -1.0143 2.7274 45 1 3.5734 -2.5164 3.5830 46 1 1.9347 -0.3260 4.5531 47 1 1.4212 -1.8364 3.7610 48 1 3.1300 -0.7209 -1.2495 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070998708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:57 Heat of formation + Delta-G solvation = -111.261937 kcal Electronic energy + Delta-G solvation = -35246.901620 eV Core-core repulsion = 30589.000630 eV Total energy + Delta-G solvation = -4657.900989 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.96765 -46.89429 -40.50813 -38.85286 -36.18139 -35.74240 -34.93148 -33.63846 -31.43667 -30.59201 -29.13648 -27.76489 -26.68781 -26.43205 -24.79016 -23.68116 -22.74499 -21.30710 -20.21757 -19.83873 -18.77902 -17.52024 -17.25568 -16.76686 -16.66513 -16.46030 -16.09717 -15.65150 -14.97749 -14.94427 -14.54413 -14.35318 -14.03145 -13.87500 -13.61099 -13.47705 -13.32017 -13.25355 -13.08124 -12.89830 -12.83453 -12.53323 -12.51978 -12.30774 -12.10237 -11.85490 -11.75122 -11.41153 -11.28530 -11.08609 -10.89453 -10.79096 -10.60811 -10.50428 -10.28899 -9.96556 -9.87945 -9.65376 -9.13983 -9.12863 -8.71885 -8.32436 -8.11527 -6.47800 -5.56741 -3.13433 2.85141 3.10833 3.28593 3.44743 3.51495 3.53496 3.70355 3.81010 4.10914 4.25507 4.36709 4.58660 4.70558 4.85840 4.90684 5.06707 5.13530 5.23174 5.25131 5.35130 5.43719 5.45828 5.52684 5.55784 5.59472 5.66058 5.73016 5.92279 5.99877 6.03042 6.12949 6.20660 6.47840 6.59013 6.60526 6.77538 6.92171 7.01193 7.12305 7.51240 7.73568 7.95719 8.06188 8.10324 8.44532 8.55810 8.89088 9.32732 9.91888 10.54416 11.41472 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.004763 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.547553 B = 5877.722585 C = 6559.798423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C -0.158 4.158 4 C 0.524 3.476 5 O -0.518 6.518 6 N -0.607 5.607 7 C 0.101 3.899 8 C -0.182 4.182 9 C 0.520 3.480 10 O -0.516 6.516 11 N -0.723 5.723 12 C 0.089 3.911 13 C 0.127 3.873 14 N -0.587 5.587 15 C -0.224 4.224 16 H 0.062 0.938 17 C 0.001 3.999 18 N -0.901 5.901 19 Si 0.897 3.103 20 H -0.290 1.290 21 H -0.294 1.294 22 H -0.280 1.280 23 C 0.174 3.826 24 C 0.114 3.886 25 C 0.287 3.713 26 F -0.190 7.190 27 F -0.206 7.206 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.389 0.611 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.039 0.961 43 H 0.250 0.750 44 H 0.028 0.972 45 H 0.064 0.936 46 H 0.104 0.896 47 H 0.060 0.940 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 12.739 -13.785 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.140 4.140 3 C -0.215 4.215 4 C 0.309 3.691 5 O -0.394 6.394 6 N -0.340 5.340 7 C -0.022 4.022 8 C -0.223 4.223 9 C 0.305 3.695 10 O -0.391 6.391 11 N -0.375 5.375 12 C -0.038 4.038 13 C -0.002 4.002 14 N -0.310 5.310 15 C -0.354 4.354 16 H 0.080 0.920 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.728 3.272 20 H -0.217 1.217 21 H -0.220 1.220 22 H -0.206 1.206 23 C 0.049 3.951 24 C -0.006 4.006 25 C 0.233 3.767 26 F -0.171 7.171 27 F -0.187 7.187 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.222 0.778 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.046 0.954 45 H 0.082 0.918 46 H 0.123 0.877 47 H 0.078 0.922 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.338 11.938 -12.956 17.668 hybrid contribution -0.645 -0.071 0.323 0.725 sum -1.983 11.867 -12.633 17.445 Atomic orbital electron populations 1.22045 0.90952 1.04105 1.03798 1.21884 0.99820 0.98159 0.94180 1.22552 1.02208 0.92680 1.04029 1.19658 0.80779 0.85008 0.83644 1.90793 1.38232 1.24512 1.85848 1.48986 1.59959 1.18391 1.06709 1.22130 0.94206 0.82202 1.03706 1.22776 0.98464 1.00872 1.00159 1.20281 0.82715 0.76697 0.89794 1.90743 1.76984 1.50667 1.20681 1.46026 1.10414 1.71259 1.09765 1.22319 0.90811 0.99085 0.91574 1.21447 0.89247 0.90869 0.98600 1.44507 1.13867 1.69658 1.03018 1.18890 1.23758 1.04245 0.88505 0.92024 1.25114 1.01961 0.95287 0.97370 1.70002 1.39652 1.09256 1.35682 0.86359 0.80358 0.76394 0.84128 1.21732 1.22024 1.20586 1.21224 0.88624 0.99441 0.85839 1.22765 0.99496 0.95513 0.82823 1.21424 0.98128 0.75283 0.81856 1.93010 1.90761 1.36810 1.96540 1.92948 1.91312 1.81111 1.53359 0.90113 0.90748 0.91080 0.90758 0.90702 0.89474 0.89211 0.88989 0.88214 0.88885 0.77841 0.89657 0.92900 0.93070 0.94295 0.93929 0.95392 0.91794 0.87749 0.92197 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 7.85 37.16 0.29 -1.28 16 2 C -0.14 -1.57 0.46 -155.66 -0.07 -1.64 16 3 C -0.16 -1.27 6.71 37.16 0.25 -1.02 16 4 C 0.52 8.48 5.73 -10.99 -0.06 8.42 16 5 O -0.52 -10.63 13.43 5.56 0.07 -10.55 16 6 N -0.61 -10.04 2.43 -171.64 -0.42 -10.45 16 7 C 0.10 1.28 4.69 -3.35 -0.02 1.26 16 8 C -0.18 -2.06 5.25 -27.87 -0.15 -2.20 16 9 C 0.52 8.43 4.72 -10.66 -0.05 8.38 16 10 O -0.52 -10.88 14.88 5.56 0.08 -10.80 16 11 N -0.72 -10.69 4.71 -59.67 -0.28 -10.97 16 12 C 0.09 1.46 6.58 -3.69 -0.02 1.43 16 13 C 0.13 2.49 6.08 -3.34 -0.02 2.47 16 14 N -0.59 -14.07 2.26 -171.20 -0.39 -14.46 16 15 C -0.22 -6.01 8.36 -15.06 -0.13 -6.14 16 16 H 0.06 1.72 7.85 -52.49 -0.41 1.31 16 17 C 0.00 0.02 4.53 -17.43 -0.08 -0.06 16 18 N -0.90 -25.99 10.06 55.49 0.56 -25.43 16 19 Si 0.90 22.36 29.57 -169.99 -5.03 17.34 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.17 4.12 3.51 -3.36 -0.01 4.11 16 24 C 0.11 2.53 3.91 -3.34 -0.01 2.52 16 25 C 0.29 3.53 3.78 37.15 0.14 3.67 16 26 F -0.19 -2.98 15.68 2.25 0.04 -2.95 16 27 F -0.21 -2.34 16.18 2.25 0.04 -2.31 16 28 H 0.08 0.77 5.23 -51.93 -0.27 0.50 16 29 H 0.07 0.62 8.03 -51.93 -0.42 0.20 16 30 H 0.07 0.85 7.56 -51.93 -0.39 0.46 16 31 H 0.07 0.60 5.96 -51.93 -0.31 0.29 16 32 H 0.07 0.50 7.25 -51.93 -0.38 0.13 16 33 H 0.09 0.57 4.75 -51.93 -0.25 0.32 16 34 H 0.09 1.27 7.83 -51.93 -0.41 0.86 16 35 H 0.09 0.85 3.08 -51.93 -0.16 0.69 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 0.82 3.75 -51.93 -0.19 0.62 16 38 H 0.39 4.63 8.70 -40.82 -0.36 4.28 16 39 H 0.09 1.66 7.02 -51.93 -0.36 1.29 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 42 H 0.04 0.73 7.77 -51.93 -0.40 0.33 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.03 0.63 5.79 -51.93 -0.30 0.33 16 45 H 0.06 1.84 6.67 -51.93 -0.35 1.49 16 46 H 0.10 2.56 4.58 -51.93 -0.24 2.33 16 47 H 0.06 1.52 7.59 -51.93 -0.39 1.13 16 48 H 0.11 1.24 8.13 -51.93 -0.42 0.82 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -33.80 352.94 -6.36 -40.16 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.41 Total: 5.17 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: 0.06 Total: 19.93 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.53 Total: -61.31 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: 0.16 Total: -21.35 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.07 Total: -5.25 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.80 -6.36 -40.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070998708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.101 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds