Wall clock time and date at job start Wed Apr 1 2020 04:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 C 1.50702 * 109.46960 * 120.00265 * 2 1 3 5 5 O 1.21277 * 119.99761 * 116.93982 * 4 2 1 6 6 N 1.34774 * 119.99799 * 296.93340 * 4 2 1 7 7 C 1.47742 * 121.65190 * 351.82678 * 6 4 2 8 8 C 1.53012 * 108.78874 * 271.25738 * 7 6 4 9 9 C 1.50704 * 109.44435 * 304.76716 * 8 7 6 10 10 O 1.21279 * 120.23454 * 296.12111 * 9 8 7 11 11 N 1.35501 * 119.52088 * 116.09862 * 9 8 7 12 12 C 1.47130 * 118.10477 * 180.29642 * 11 9 8 13 13 C 1.53012 * 109.09114 * 99.92888 * 12 11 9 14 14 N 1.47764 * 108.79402 * 301.48022 * 13 12 11 15 15 C 1.36940 * 121.64706 * 276.63589 * 14 13 12 16 16 H 1.07999 * 119.99690 * 30.57642 * 15 14 13 17 17 C 1.38807 * 120.00375 * 210.58707 * 15 14 13 18 18 N 1.31622 * 119.99910 * 10.19386 * 17 15 14 19 19 Si 1.86799 * 120.00072 * 190.19986 * 17 15 14 20 20 H 1.48499 * 109.46937 * 89.99910 * 19 17 15 21 21 H 1.48505 * 109.47023 * 209.99601 * 19 17 15 22 22 H 1.48499 * 109.47205 * 329.99590 * 19 17 15 23 23 C 1.47745 * 116.71268 * 96.90420 * 14 13 12 24 24 C 1.47775 * 121.64696 * 171.84970 * 6 4 2 25 25 C 1.52994 * 109.46794 * 240.00076 * 2 1 3 26 26 F 1.39897 * 109.47510 * 299.99969 * 25 2 1 27 27 F 1.39905 * 109.47144 * 60.00021 * 25 2 1 28 28 H 1.09006 * 109.46680 * 290.95310 * 1 2 3 29 29 H 1.08993 * 109.47041 * 50.95022 * 1 2 3 30 30 H 1.09002 * 109.47019 * 170.95724 * 1 2 3 31 31 H 1.08998 * 109.46857 * 153.06919 * 3 2 1 32 32 H 1.08996 * 109.46855 * 273.07494 * 3 2 1 33 33 H 1.09000 * 109.46701 * 33.07401 * 3 2 1 34 34 H 1.09004 * 109.58216 * 151.47083 * 7 6 4 35 35 H 1.09002 * 109.70421 * 31.12346 * 7 6 4 36 36 H 1.08997 * 109.48030 * 184.77186 * 8 7 6 37 37 H 1.09005 * 109.48060 * 64.75580 * 8 7 6 38 38 H 0.97000 * 120.94511 * 0.32539 * 11 9 8 39 39 H 1.08995 * 109.53406 * 340.04535 * 12 11 9 40 40 H 1.08993 * 109.59434 * 219.85101 * 12 11 9 41 41 H 1.09002 * 109.57918 * 181.68701 * 13 12 11 42 42 H 1.09000 * 109.69546 * 61.34361 * 13 12 11 43 43 H 0.97003 * 120.00014 * 180.02562 * 18 17 15 44 44 H 1.08997 * 109.57882 * 345.18570 * 23 14 13 45 45 H 1.08998 * 109.57827 * 105.58494 * 23 14 13 46 46 H 1.08993 * 109.58181 * 170.34435 * 24 6 4 47 47 H 1.08996 * 109.58386 * 290.62242 * 24 6 4 48 48 H 1.09006 * 109.47234 * 179.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.6831 -1.7279 1.1200 6 7 1.7585 -0.2151 2.4536 7 6 1.1261 1.1084 2.6302 8 6 2.2227 2.1732 2.6996 9 6 3.1988 1.8178 3.7915 10 8 2.8354 1.7837 4.9481 11 7 4.4850 1.5363 3.4717 12 6 5.4097 1.1868 4.5614 13 6 5.5698 -0.3341 4.6135 14 7 4.2411 -0.9457 4.8229 15 6 3.6940 -1.0651 6.0725 16 1 3.9263 -0.3370 6.8355 17 6 2.8410 -2.1221 6.3587 18 7 2.7137 -3.1150 5.5041 19 14 1.8735 -2.1353 7.9566 20 1 0.5665 -1.4616 7.7494 21 1 1.6446 -3.5387 8.3851 22 1 2.6403 -1.4163 9.0055 23 6 3.5345 -1.4277 3.6182 24 6 2.0764 -0.9687 3.6843 25 6 2.0400 -0.7212 -1.2492 26 9 1.5737 -2.0402 -1.2493 27 9 1.5736 -0.0617 -2.3915 28 1 -0.3633 0.3675 0.9598 29 1 -0.3633 0.6474 -0.7980 30 1 -0.3633 -1.0149 -0.1615 31 1 3.0250 1.4796 0.4654 32 1 2.1092 1.8034 -1.0262 33 1 1.3493 2.0720 0.5608 34 1 0.5493 1.1171 3.5551 35 1 0.4675 1.3165 1.7870 36 1 1.7744 3.1432 2.9145 37 1 2.7465 2.2185 1.7447 38 1 4.7876 1.5648 2.5505 39 1 5.0072 1.5435 5.5094 40 1 6.3798 1.6494 4.3802 41 1 6.2302 -0.6039 5.4376 42 1 5.9926 -0.6913 3.6744 43 1 2.1173 -3.8535 5.7039 44 1 4.0074 -1.0143 2.7274 45 1 3.5734 -2.5164 3.5830 46 1 1.9347 -0.3260 4.5531 47 1 1.4212 -1.8364 3.7610 48 1 3.1300 -0.7209 -1.2495 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070998708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:56 Heat of formation + Delta-G solvation = -135.966654 kcal Electronic energy + Delta-G solvation = -35247.972896 eV Core-core repulsion = 30589.000630 eV Total energy + Delta-G solvation = -4658.972266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.95479 -47.91006 -41.77375 -40.17313 -37.79425 -37.15702 -36.12103 -35.13493 -33.19369 -32.01872 -30.73811 -28.61012 -28.35603 -27.31625 -26.45990 -25.05949 -24.17443 -22.53323 -21.99551 -21.18391 -19.96924 -18.65781 -18.40865 -18.24668 -17.88180 -17.78356 -17.30013 -17.08819 -16.50854 -16.30136 -16.18888 -15.64087 -15.31407 -15.15461 -15.03098 -14.90613 -14.59286 -14.38573 -14.33559 -14.20720 -14.03698 -13.77163 -13.54980 -13.40762 -13.27151 -13.10491 -13.07083 -13.00393 -12.82569 -12.55682 -12.37676 -12.27032 -12.01496 -11.84899 -11.81342 -11.72432 -11.61851 -11.44237 -10.69879 -10.52773 -10.44261 -9.87133 -9.59680 -8.48885 -7.68064 -5.26935 1.40917 1.43011 1.50816 1.58847 1.84383 2.03736 2.52244 2.66061 2.73811 3.09330 3.32386 3.38072 3.48828 3.69636 3.82270 3.89822 4.04079 4.08925 4.20614 4.33186 4.40057 4.49814 4.56221 4.59112 4.64900 4.68427 4.71723 4.73649 4.78427 4.86529 4.88765 4.90584 5.01164 5.08693 5.18067 5.24707 5.26052 5.33017 5.66771 5.77214 5.82102 5.90270 6.40199 6.57279 6.90342 7.15539 7.24251 7.69169 7.90168 8.47951 9.25764 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.004763 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.547553 B = 5877.722585 C = 6559.798423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.159 4.159 4 C 0.520 3.480 5 O -0.569 6.569 6 N -0.606 5.606 7 C 0.097 3.903 8 C -0.171 4.171 9 C 0.509 3.491 10 O -0.571 6.571 11 N -0.715 5.715 12 C 0.102 3.898 13 C 0.119 3.881 14 N -0.600 5.600 15 C -0.212 4.212 16 H 0.050 0.950 17 C -0.046 4.046 18 N -0.927 5.927 19 Si 0.946 3.054 20 H -0.293 1.293 21 H -0.297 1.297 22 H -0.274 1.274 23 C 0.196 3.804 24 C 0.141 3.859 25 C 0.282 3.718 26 F -0.215 7.215 27 F -0.197 7.197 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.407 0.593 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.241 0.759 44 H 0.042 0.958 45 H 0.007 0.993 46 H 0.082 0.918 47 H 0.015 0.985 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.339 16.434 -16.125 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.127 4.127 3 C -0.215 4.215 4 C 0.308 3.692 5 O -0.447 6.447 6 N -0.339 5.339 7 C -0.025 4.025 8 C -0.212 4.212 9 C 0.296 3.704 10 O -0.449 6.449 11 N -0.368 5.368 12 C -0.025 4.025 13 C -0.007 4.007 14 N -0.323 5.323 15 C -0.343 4.343 16 H 0.068 0.932 17 C -0.241 4.241 18 N -0.574 5.574 19 Si 0.776 3.224 20 H -0.220 1.220 21 H -0.224 1.224 22 H -0.199 1.199 23 C 0.071 3.929 24 C 0.018 3.982 25 C 0.228 3.772 26 F -0.197 7.197 27 F -0.178 7.178 28 H 0.107 0.893 29 H 0.124 0.876 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.243 0.757 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.025 0.975 46 H 0.101 0.899 47 H 0.033 0.967 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.351 15.703 -15.347 21.998 hybrid contribution -0.570 -1.209 0.999 1.669 sum -1.921 14.493 -14.348 20.485 Atomic orbital electron populations 1.22117 0.89821 1.03614 1.05444 1.21833 1.00513 0.99692 0.90685 1.22671 1.02768 0.89778 1.06312 1.20542 0.79573 0.84448 0.84595 1.90780 1.40509 1.26801 1.86642 1.48854 1.60247 1.19593 1.05210 1.22440 0.95009 0.80226 1.04801 1.22851 0.96984 1.01540 0.99785 1.21219 0.83455 0.75499 0.90226 1.90729 1.77883 1.52966 1.23354 1.45994 1.10090 1.70318 1.10373 1.21992 0.93081 0.96207 0.91185 1.21686 0.87046 0.93052 0.98936 1.44654 1.15566 1.69911 1.02188 1.18891 1.23083 1.03094 0.89278 0.93231 1.25635 1.03360 0.95419 0.99712 1.70188 1.40459 1.09777 1.37002 0.85570 0.79176 0.75920 0.81716 1.21998 1.22426 1.19870 1.20794 0.89902 0.96048 0.86152 1.21979 0.97497 0.93951 0.84767 1.21656 0.98876 0.74238 0.82443 1.92965 1.91071 1.38940 1.96699 1.92963 1.91302 1.80692 1.52817 0.89264 0.87582 0.93389 0.90296 0.88187 0.87193 0.91053 0.84578 0.84845 0.85455 0.75671 0.92703 0.88359 0.93724 0.93077 0.94938 0.94004 0.97506 0.89929 0.96682 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 7.85 71.99 0.56 -2.08 16 2 C -0.12 -2.45 0.46 -52.93 -0.02 -2.47 16 3 C -0.16 -1.63 6.71 71.98 0.48 -1.14 16 4 C 0.52 16.33 5.73 87.66 0.50 16.83 16 5 O -0.57 -23.76 13.43 -3.02 -0.04 -23.80 16 6 N -0.61 -19.65 2.43 -815.34 -1.98 -21.63 16 7 C 0.10 2.17 4.69 86.15 0.40 2.57 16 8 C -0.17 -3.15 5.25 29.85 0.16 -2.99 16 9 C 0.51 15.45 4.72 87.54 0.41 15.86 16 10 O -0.57 -23.92 14.88 -3.03 -0.05 -23.97 16 11 N -0.72 -19.30 4.71 -460.68 -2.17 -21.47 16 12 C 0.10 3.19 6.58 86.26 0.57 3.76 16 13 C 0.12 4.67 6.08 86.14 0.52 5.20 16 14 N -0.60 -29.58 2.26 -695.55 -1.57 -31.15 16 15 C -0.21 -11.82 8.36 84.03 0.70 -11.12 16 16 H 0.05 2.86 7.85 -2.91 -0.02 2.84 16 17 C -0.05 -2.66 4.53 84.86 0.38 -2.27 16 18 N -0.93 -56.62 10.06 21.65 0.22 -56.40 16 19 Si 0.95 47.71 29.57 68.60 2.03 49.73 16 20 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 21 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 22 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 23 C 0.20 9.70 3.51 86.14 0.30 10.00 16 24 C 0.14 6.52 3.91 86.14 0.34 6.86 16 25 C 0.28 6.25 3.78 71.98 0.27 6.52 16 26 F -0.22 -6.69 15.68 44.97 0.71 -5.98 16 27 F -0.20 -3.76 16.18 44.97 0.73 -3.04 16 28 H 0.09 1.37 5.23 -2.38 -0.01 1.35 16 29 H 0.11 1.22 8.03 -2.39 -0.02 1.20 16 30 H 0.05 1.07 7.56 -2.39 -0.02 1.06 16 31 H 0.08 0.79 5.96 -2.39 -0.01 0.78 16 32 H 0.10 0.67 7.25 -2.39 -0.02 0.65 16 33 H 0.11 0.65 4.75 -2.39 -0.01 0.64 16 34 H 0.07 1.92 7.83 -2.38 -0.02 1.90 16 35 H 0.14 1.85 3.08 -2.39 -0.01 1.84 16 36 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.13 1.47 3.75 -2.38 -0.01 1.46 16 38 H 0.41 8.06 8.70 -92.71 -0.81 7.25 16 39 H 0.05 2.11 7.02 -2.39 -0.02 2.09 16 40 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.04 1.79 8.13 -2.39 -0.02 1.77 16 42 H 0.05 1.86 7.77 -2.39 -0.02 1.85 16 43 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.04 1.90 5.79 -2.39 -0.01 1.89 16 45 H 0.01 0.43 6.67 -2.39 -0.02 0.41 16 46 H 0.08 4.22 4.58 -2.39 -0.01 4.21 16 47 H 0.01 0.81 7.59 -2.39 -0.02 0.79 16 48 H 0.13 2.46 8.13 -2.38 -0.02 2.44 16 Total: -1.00 -82.70 352.94 3.68 -79.02 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.22 Total: 13.17 kcal Atomic # 6 Polarization: 39.93 SS G_CDS: 5.59 Total: 45.52 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -5.50 Total: -130.65 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.09 Total: -47.77 kcal Atomic # 9 Polarization: -10.45 SS G_CDS: 1.43 Total: -9.02 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.73 kcal Total: -82.70 3.68 -79.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070998708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.950 kcal (2) G-P(sol) polarization free energy of solvation -82.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds