Wall clock time and date at job start Wed Apr 1 2020 05:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 119.99927 * 2 1 4 4 N 1.46498 * 109.47354 * 125.00158 * 3 2 1 5 5 C 1.34820 * 126.59882 * 124.99904 * 4 3 2 6 6 C 1.36595 * 106.84017 * 179.97438 * 5 4 3 7 7 C 1.47520 * 125.76803 * 179.97438 * 6 5 4 8 8 O 1.21599 * 120.00284 * 6.58881 * 7 6 5 9 9 N 1.34776 * 120.00246 * 186.58712 * 7 6 5 10 10 C 1.46846 * 120.40521 * 356.41839 * 9 7 6 11 11 C 1.53373 * 109.28388 * 127.78773 * 10 9 7 12 12 C 1.52790 * 108.81837 * 53.80737 * 11 10 9 13 13 H 1.09006 * 109.34077 * 57.16071 * 12 11 10 14 14 O 1.42597 * 111.11053 * 177.46954 * 12 11 10 15 15 C 1.43141 * 113.63409 * 183.61397 * 14 12 11 16 16 C 1.53198 * 109.74159 * 298.31725 * 15 14 12 17 17 N 1.47346 * 108.80117 * 51.20738 * 16 15 14 18 18 C 1.36933 * 121.30790 * 129.73955 * 17 16 15 19 19 H 1.07999 * 120.00393 * 194.63219 * 18 17 16 20 20 C 1.38817 * 119.99904 * 14.63280 * 18 17 16 21 21 N 1.31621 * 119.99784 * 30.21309 * 20 18 17 22 22 Si 1.86796 * 120.00232 * 210.21223 * 20 18 17 23 23 H 1.48499 * 109.47242 * 94.99761 * 22 20 18 24 24 H 1.48503 * 109.46974 * 215.00207 * 22 20 18 25 25 H 1.48502 * 109.47092 * 334.99312 * 22 20 18 26 26 C 1.46877 * 117.38860 * 309.75772 * 17 16 15 27 27 H 1.08991 * 110.20683 * 292.03448 * 26 17 16 28 28 C 1.47139 * 120.42163 * 176.37334 * 9 7 6 29 29 N 1.34397 * 108.45733 * 0.24235 * 6 5 4 30 30 N 1.28757 * 109.52444 * 359.58739 * 29 6 5 31 31 H 1.07996 * 119.99929 * 0.02562 * 1 2 3 32 32 H 1.08004 * 119.99954 * 180.02562 * 1 2 3 33 33 H 1.07996 * 119.99929 * 179.97438 * 2 1 3 34 34 H 1.08999 * 109.47715 * 5.00119 * 3 2 1 35 35 H 1.09010 * 109.47183 * 245.00091 * 3 2 1 36 36 H 1.07999 * 126.57516 * 359.94065 * 5 4 3 37 37 H 1.09001 * 109.50691 * 7.83354 * 10 9 7 38 38 H 1.08996 * 109.50805 * 247.74255 * 10 9 7 39 39 H 1.08997 * 109.57582 * 173.60935 * 11 10 9 40 40 H 1.08999 * 109.57757 * 294.01210 * 11 10 9 41 41 H 1.08997 * 109.43105 * 178.22894 * 15 14 12 42 42 H 1.09010 * 109.37922 * 58.36460 * 15 14 12 43 43 H 1.09000 * 109.58063 * 291.41014 * 16 15 14 44 44 H 1.09004 * 109.58456 * 171.00130 * 16 15 14 45 45 H 0.96994 * 119.99969 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.68853 * 113.53266 * 28 9 7 47 47 H 1.08992 * 109.72893 * 352.88129 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3230 1.5497 1.0740 6 6 4.7899 1.4872 2.3562 7 6 6.1939 1.6659 2.7722 8 8 7.0303 2.0085 1.9587 9 7 6.5498 1.4494 4.0540 10 6 5.5349 1.1120 5.0602 11 6 5.9600 -0.1619 5.8011 12 6 7.3713 0.0362 6.3521 13 1 7.3863 0.9131 6.9994 14 8 7.7941 -1.1006 7.1020 15 6 9.0787 -0.9398 7.7126 16 6 10.1434 -0.7316 6.6310 17 7 9.6996 0.3457 5.7289 18 6 10.5225 1.3936 5.4132 19 1 10.1144 2.2810 4.9524 20 6 11.8815 1.3153 5.6853 21 7 12.4896 0.1481 5.6695 22 14 12.8471 2.8663 6.0740 23 1 12.9234 3.0461 7.5461 24 1 14.2190 2.7477 5.5180 25 1 12.1667 4.0383 5.4667 26 6 8.3397 0.2517 5.1821 27 1 8.2697 -0.5866 4.4890 28 6 7.9599 1.5473 4.4625 29 7 3.7549 1.2296 3.1738 30 7 2.6729 1.1366 2.4822 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3586 2.1316 0.0896 35 1 2.6213 1.4026 -0.9315 36 1 4.9067 1.7371 0.1849 37 1 4.5765 0.9445 4.5686 38 1 5.4406 1.9324 5.7715 39 1 5.2704 -0.3537 6.6231 40 1 5.9525 -1.0055 5.1109 41 1 9.3193 -1.8317 8.2912 42 1 9.0591 -0.0732 8.3736 43 1 10.2728 -1.6532 6.0635 44 1 11.0880 -0.4516 7.0973 45 1 13.4391 0.0933 5.8600 46 1 8.0891 2.3940 5.1367 47 1 8.5897 1.6775 3.5825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074352992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:47 Heat of formation + Delta-G solvation = 99.383463 kcal Electronic energy + Delta-G solvation = -31262.763918 eV Core-core repulsion = 27064.686385 eV Total energy + Delta-G solvation = -4198.077533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.45993 -39.86818 -38.41427 -36.44631 -35.98585 -34.68856 -33.24303 -31.88417 -31.32329 -30.91542 -29.72085 -27.75014 -26.94743 -25.43271 -23.90728 -23.26581 -22.66070 -21.85152 -21.27261 -20.67242 -19.74980 -19.33669 -17.69093 -16.80607 -16.57844 -16.30610 -15.79088 -15.64297 -15.35285 -15.26537 -14.91719 -14.83685 -14.40704 -14.10695 -13.88764 -13.67687 -13.55014 -13.08834 -13.04692 -12.95467 -12.73537 -12.35748 -12.24439 -12.03178 -11.93123 -11.35840 -11.24737 -10.93985 -10.92023 -10.71726 -10.61302 -10.36950 -10.22147 -10.20263 -10.08646 -9.84087 -9.65321 -9.51664 -9.43927 -8.99903 -8.42277 -8.24888 -6.86617 -5.85358 -3.11071 0.92290 1.27463 1.60738 2.07896 3.11770 3.38186 3.40026 3.48826 3.49988 3.92139 4.00637 4.15908 4.35972 4.43664 4.49324 4.54673 4.77472 4.83624 5.06746 5.09212 5.21496 5.24712 5.29427 5.41497 5.54400 5.59044 5.77089 5.85158 5.90109 5.93626 5.94216 6.04155 6.10247 6.17463 6.22597 6.32990 6.34575 6.44530 6.53906 6.66780 6.79017 6.90568 7.17045 7.48487 7.58457 7.76467 7.80339 7.95604 8.26737 8.33175 9.09852 9.78358 10.31658 11.23598 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.002706 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.670715 B =10344.642613 C =11373.566253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.182 4.182 3 C 0.151 3.849 4 N -0.358 5.358 5 C 0.092 3.908 6 C -0.088 4.088 7 C 0.599 3.401 8 O -0.538 6.538 9 N -0.592 5.592 10 C 0.073 3.927 11 C -0.119 4.119 12 C 0.076 3.924 13 H 0.053 0.947 14 O -0.390 6.390 15 C 0.041 3.959 16 C 0.133 3.867 17 N -0.589 5.589 18 C -0.258 4.258 19 H 0.081 0.919 20 C 0.002 3.998 21 N -0.891 5.891 22 Si 0.891 3.109 23 H -0.288 1.288 24 H -0.293 1.293 25 H -0.278 1.278 26 C 0.139 3.861 27 H 0.036 0.964 28 C 0.122 3.878 29 N -0.206 5.206 30 N -0.062 5.062 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.206 0.794 37 H 0.144 0.856 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.025 0.975 44 H 0.103 0.897 45 H 0.254 0.746 46 H 0.076 0.924 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.152 0.834 -9.234 24.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.200 4.200 3 C 0.031 3.969 4 N -0.144 5.144 5 C -0.064 4.064 6 C -0.227 4.227 7 C 0.384 3.616 8 O -0.415 6.415 9 N -0.323 5.323 10 C -0.051 4.051 11 C -0.158 4.158 12 C 0.016 3.984 13 H 0.071 0.929 14 O -0.309 6.309 15 C -0.037 4.037 16 C 0.008 3.992 17 N -0.313 5.313 18 C -0.386 4.386 19 H 0.098 0.902 20 C -0.196 4.196 21 N -0.536 5.536 22 Si 0.720 3.280 23 H -0.215 1.215 24 H -0.220 1.220 25 H -0.203 1.203 26 C 0.031 3.969 27 H 0.054 0.946 28 C 0.000 4.000 29 N -0.079 5.079 30 N -0.041 5.041 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.133 0.867 36 H 0.223 0.777 37 H 0.161 0.839 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.043 0.957 44 H 0.120 0.880 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -23.764 0.565 -8.696 25.311 hybrid contribution 1.579 0.981 -0.476 1.919 sum -22.185 1.546 -9.172 24.056 Atomic orbital electron populations 1.24000 0.95461 1.02848 0.96300 1.22880 0.96385 0.97431 1.03353 1.21119 0.91951 0.98198 0.85648 1.50498 1.06661 1.48262 1.08963 1.23400 0.84437 0.97881 1.00727 1.21567 0.95403 1.15213 0.90479 1.16805 0.84631 0.77796 0.82394 1.90820 1.50683 1.48306 1.51693 1.48058 1.09261 1.67415 1.07565 1.22824 0.94362 0.96309 0.91591 1.21818 0.95656 0.98283 1.00069 1.22498 0.93543 0.88798 0.93544 0.92922 1.87743 1.35600 1.39393 1.68169 1.23278 0.84210 1.00140 0.96064 1.21590 0.96678 0.90652 0.90292 1.44205 1.09625 1.25835 1.51669 1.19235 0.88534 0.92982 1.37823 0.90179 1.24726 0.96009 0.96459 1.02427 1.70208 1.09449 1.23471 1.50427 0.86420 0.79304 0.83733 0.78494 1.21523 1.21952 1.20267 1.21238 0.87075 0.95430 0.93139 0.94598 1.21855 0.78915 0.98178 1.01014 1.74108 0.96669 1.11280 1.25806 1.82015 1.17356 1.21275 0.83436 0.87905 0.87355 0.86346 0.87977 0.86749 0.77736 0.83944 0.91644 0.90346 0.91239 0.90081 0.94042 0.95694 0.87953 0.93580 0.90537 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 14.32 29.01 0.42 -0.17 16 2 C -0.18 -0.90 9.72 -36.03 -0.35 -1.25 16 3 C 0.15 0.67 6.98 -5.20 -0.04 0.64 16 4 N -0.36 -3.14 3.68 -62.24 -0.23 -3.37 16 5 C 0.09 0.91 11.28 -16.83 -0.19 0.72 16 6 C -0.09 -1.20 6.77 -83.55 -0.57 -1.76 16 7 C 0.60 10.17 7.69 -12.48 -0.10 10.07 16 8 O -0.54 -10.56 16.29 5.28 0.09 -10.47 16 9 N -0.59 -10.22 2.98 -173.91 -0.52 -10.74 16 10 C 0.07 1.08 6.27 -3.66 -0.02 1.06 16 11 C -0.12 -1.88 5.82 -26.65 -0.16 -2.04 16 12 C 0.08 1.46 2.48 -26.63 -0.07 1.40 16 13 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 14 O -0.39 -8.02 10.49 -35.23 -0.37 -8.39 16 15 C 0.04 0.83 6.95 37.26 0.26 1.09 16 16 C 0.13 3.25 5.68 -3.48 -0.02 3.23 16 17 N -0.59 -14.89 3.07 -164.36 -0.51 -15.39 16 18 C -0.26 -6.98 9.02 -15.06 -0.14 -7.12 16 19 H 0.08 2.12 6.12 -52.49 -0.32 1.80 16 20 C 0.00 0.07 4.74 -17.43 -0.08 -0.01 16 21 N -0.89 -25.76 11.25 55.49 0.62 -25.14 16 22 Si 0.89 21.62 29.65 -169.99 -5.04 16.58 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.14 3.05 3.03 -67.52 -0.20 2.85 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 28 C 0.12 2.47 4.41 -3.70 -0.02 2.45 16 29 N -0.21 -2.77 8.62 32.84 0.28 -2.48 16 30 N -0.06 -0.73 13.63 60.35 0.82 0.09 16 31 H 0.10 0.29 7.84 -52.49 -0.41 -0.12 16 32 H 0.11 0.36 8.06 -52.48 -0.42 -0.06 16 33 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.10 0.32 7.79 -51.93 -0.40 -0.09 16 35 H 0.11 0.20 8.08 -51.92 -0.42 -0.22 16 36 H 0.21 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.14 2.01 3.61 -133.00 -0.48 1.53 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 43 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.10 2.70 5.75 -51.93 -0.30 2.40 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.08 1.55 7.52 -51.93 -0.39 1.16 16 47 H 0.10 2.30 6.66 -51.93 -0.35 1.96 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -33.90 377.10 -7.28 -41.18 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.86 Total: 1.30 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -1.27 Total: 11.15 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.48 Total: -57.04 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.28 Total: -18.86 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.04 Total: 16.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.90 -7.28 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074352992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.566 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds