Wall clock time and date at job start Wed Apr 1 2020 05:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 119.99927 * 2 1 4 4 N 1.46498 * 109.47354 * 125.00158 * 3 2 1 5 5 C 1.34820 * 126.59882 * 124.99904 * 4 3 2 6 6 C 1.36595 * 106.84017 * 179.97438 * 5 4 3 7 7 C 1.47520 * 125.76803 * 179.97438 * 6 5 4 8 8 O 1.21599 * 120.00284 * 6.58881 * 7 6 5 9 9 N 1.34776 * 120.00246 * 186.58712 * 7 6 5 10 10 C 1.46846 * 120.40521 * 356.41839 * 9 7 6 11 11 C 1.53373 * 109.28388 * 127.78773 * 10 9 7 12 12 C 1.52790 * 108.81837 * 53.80737 * 11 10 9 13 13 H 1.09006 * 109.34077 * 57.16071 * 12 11 10 14 14 O 1.42597 * 111.11053 * 177.46954 * 12 11 10 15 15 C 1.43141 * 113.63409 * 183.61397 * 14 12 11 16 16 C 1.53198 * 109.74159 * 298.31725 * 15 14 12 17 17 N 1.47346 * 108.80117 * 51.20738 * 16 15 14 18 18 C 1.36933 * 121.30790 * 129.73955 * 17 16 15 19 19 H 1.07999 * 120.00393 * 194.63219 * 18 17 16 20 20 C 1.38817 * 119.99904 * 14.63280 * 18 17 16 21 21 N 1.31621 * 119.99784 * 30.21309 * 20 18 17 22 22 Si 1.86796 * 120.00232 * 210.21223 * 20 18 17 23 23 H 1.48499 * 109.47242 * 94.99761 * 22 20 18 24 24 H 1.48503 * 109.46974 * 215.00207 * 22 20 18 25 25 H 1.48502 * 109.47092 * 334.99312 * 22 20 18 26 26 C 1.46877 * 117.38860 * 309.75772 * 17 16 15 27 27 H 1.08991 * 110.20683 * 292.03448 * 26 17 16 28 28 C 1.47139 * 120.42163 * 176.37334 * 9 7 6 29 29 N 1.34397 * 108.45733 * 0.24235 * 6 5 4 30 30 N 1.28757 * 109.52444 * 359.58739 * 29 6 5 31 31 H 1.07996 * 119.99929 * 0.02562 * 1 2 3 32 32 H 1.08004 * 119.99954 * 180.02562 * 1 2 3 33 33 H 1.07996 * 119.99929 * 179.97438 * 2 1 3 34 34 H 1.08999 * 109.47715 * 5.00119 * 3 2 1 35 35 H 1.09010 * 109.47183 * 245.00091 * 3 2 1 36 36 H 1.07999 * 126.57516 * 359.94065 * 5 4 3 37 37 H 1.09001 * 109.50691 * 7.83354 * 10 9 7 38 38 H 1.08996 * 109.50805 * 247.74255 * 10 9 7 39 39 H 1.08997 * 109.57582 * 173.60935 * 11 10 9 40 40 H 1.08999 * 109.57757 * 294.01210 * 11 10 9 41 41 H 1.08997 * 109.43105 * 178.22894 * 15 14 12 42 42 H 1.09010 * 109.37922 * 58.36460 * 15 14 12 43 43 H 1.09000 * 109.58063 * 291.41014 * 16 15 14 44 44 H 1.09004 * 109.58456 * 171.00130 * 16 15 14 45 45 H 0.96994 * 119.99969 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.68853 * 113.53266 * 28 9 7 47 47 H 1.08992 * 109.72893 * 352.88129 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3230 1.5497 1.0740 6 6 4.7899 1.4872 2.3562 7 6 6.1939 1.6659 2.7722 8 8 7.0303 2.0085 1.9587 9 7 6.5498 1.4494 4.0540 10 6 5.5349 1.1120 5.0602 11 6 5.9600 -0.1619 5.8011 12 6 7.3713 0.0362 6.3521 13 1 7.3863 0.9131 6.9994 14 8 7.7941 -1.1006 7.1020 15 6 9.0787 -0.9398 7.7126 16 6 10.1434 -0.7316 6.6310 17 7 9.6996 0.3457 5.7289 18 6 10.5225 1.3936 5.4132 19 1 10.1144 2.2810 4.9524 20 6 11.8815 1.3153 5.6853 21 7 12.4896 0.1481 5.6695 22 14 12.8471 2.8663 6.0740 23 1 12.9234 3.0461 7.5461 24 1 14.2190 2.7477 5.5180 25 1 12.1667 4.0383 5.4667 26 6 8.3397 0.2517 5.1821 27 1 8.2697 -0.5866 4.4890 28 6 7.9599 1.5473 4.4625 29 7 3.7549 1.2296 3.1738 30 7 2.6729 1.1366 2.4822 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3586 2.1316 0.0896 35 1 2.6213 1.4026 -0.9315 36 1 4.9067 1.7371 0.1849 37 1 4.5765 0.9445 4.5686 38 1 5.4406 1.9324 5.7715 39 1 5.2704 -0.3537 6.6231 40 1 5.9525 -1.0055 5.1109 41 1 9.3193 -1.8317 8.2912 42 1 9.0591 -0.0732 8.3736 43 1 10.2728 -1.6532 6.0635 44 1 11.0880 -0.4516 7.0973 45 1 13.4391 0.0933 5.8600 46 1 8.0891 2.3940 5.1367 47 1 8.5897 1.6775 3.5825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074352992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:46 Heat of formation + Delta-G solvation = 75.776769 kcal Electronic energy + Delta-G solvation = -31263.787581 eV Core-core repulsion = 27064.686385 eV Total energy + Delta-G solvation = -4199.101196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.34462 -41.33745 -39.95046 -37.50550 -36.93339 -36.55871 -33.96485 -33.46317 -32.99596 -32.04618 -31.25089 -29.06184 -28.07189 -26.95621 -25.55547 -24.55655 -23.61735 -23.24958 -22.66018 -21.50684 -21.17217 -20.48554 -18.80578 -18.63204 -17.77137 -17.25650 -17.01279 -16.95527 -16.80275 -16.42189 -16.15909 -16.13002 -15.73045 -15.50825 -15.35214 -15.11402 -14.70934 -14.64237 -14.56198 -14.19993 -13.85864 -13.59811 -13.41509 -13.17412 -12.98554 -12.86302 -12.82385 -12.47614 -12.42309 -12.34905 -12.11865 -11.91877 -11.85535 -11.49373 -11.38882 -11.27009 -10.90724 -10.83601 -10.56702 -10.41846 -10.33233 -9.70479 -8.90828 -7.95524 -5.24476 0.12668 0.54589 0.78053 1.46042 1.48695 1.57394 1.58572 1.81641 2.16281 2.48955 2.78214 3.08102 3.14933 3.36666 3.44270 3.65443 3.82147 3.84319 3.93319 3.98161 4.10837 4.13640 4.16324 4.23374 4.31953 4.39118 4.48763 4.49979 4.55405 4.56678 4.63310 4.74987 4.83607 4.96011 4.96553 5.04267 5.11585 5.21130 5.29779 5.38497 5.46610 5.54574 5.60460 5.66589 5.70062 6.18757 6.28332 6.31771 6.81122 7.01098 7.05440 7.73312 8.25137 9.12389 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.002706 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.670715 B =10344.642613 C =11373.566253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.199 4.199 3 C 0.142 3.858 4 N -0.342 5.342 5 C 0.114 3.886 6 C -0.118 4.118 7 C 0.597 3.403 8 O -0.574 6.574 9 N -0.596 5.596 10 C 0.076 3.924 11 C -0.110 4.110 12 C 0.081 3.919 13 H 0.056 0.944 14 O -0.393 6.393 15 C 0.052 3.948 16 C 0.136 3.864 17 N -0.604 5.604 18 C -0.263 4.263 19 H 0.082 0.918 20 C -0.048 4.048 21 N -0.926 5.926 22 Si 0.957 3.043 23 H -0.283 1.283 24 H -0.298 1.298 25 H -0.270 1.270 26 C 0.137 3.863 27 H 0.008 0.992 28 C 0.138 3.862 29 N -0.220 5.220 30 N -0.074 5.074 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.148 0.852 36 H 0.236 0.764 37 H 0.159 0.841 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.061 0.939 41 H 0.110 0.890 42 H 0.049 0.951 43 H -0.003 1.003 44 H 0.080 0.920 45 H 0.252 0.748 46 H 0.075 0.925 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.102 1.865 -9.550 27.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.218 4.218 3 C 0.024 3.976 4 N -0.127 5.127 5 C -0.044 4.044 6 C -0.256 4.256 7 C 0.385 3.615 8 O -0.453 6.453 9 N -0.327 5.327 10 C -0.046 4.046 11 C -0.149 4.149 12 C 0.022 3.978 13 H 0.074 0.926 14 O -0.312 6.312 15 C -0.025 4.025 16 C 0.010 3.990 17 N -0.329 5.329 18 C -0.392 4.392 19 H 0.099 0.901 20 C -0.244 4.244 21 N -0.572 5.572 22 Si 0.785 3.215 23 H -0.210 1.210 24 H -0.225 1.225 25 H -0.194 1.194 26 C 0.029 3.971 27 H 0.026 0.974 28 C 0.015 3.985 29 N -0.092 5.092 30 N -0.053 5.053 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.252 0.748 37 H 0.175 0.825 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.079 0.921 41 H 0.128 0.872 42 H 0.068 0.932 43 H 0.015 0.985 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.093 0.907 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.796 1.593 -9.011 28.315 hybrid contribution 2.363 0.604 -0.554 2.501 sum -24.432 2.196 -9.564 26.330 Atomic orbital electron populations 1.24206 0.95276 1.03790 0.94585 1.22866 0.96773 0.97264 1.04885 1.21635 0.92148 0.98590 0.85239 1.50799 1.06805 1.46203 1.08871 1.23799 0.84869 0.95358 1.00325 1.21190 0.93814 1.18496 0.92143 1.17234 0.85933 0.76661 0.81707 1.90789 1.52164 1.49883 1.52456 1.48094 1.08236 1.67755 1.08586 1.23018 0.94033 0.96285 0.91308 1.21819 0.93820 0.98488 1.00736 1.22537 0.94501 0.88693 0.92101 0.92562 1.87751 1.35242 1.40051 1.68147 1.23164 0.82815 1.01932 0.94611 1.21497 0.97463 0.89107 0.90900 1.44499 1.10692 1.25640 1.52104 1.19528 0.88993 0.93509 1.37190 0.90081 1.25470 0.96938 0.99111 1.02864 1.70327 1.09479 1.25396 1.52033 0.85397 0.77470 0.80442 0.78181 1.20983 1.22477 1.19437 1.21357 0.86417 0.95241 0.94049 0.97429 1.21405 0.80687 0.97154 0.99283 1.73940 0.96817 1.11873 1.26605 1.81923 1.16795 1.21605 0.85000 0.86475 0.87009 0.87495 0.85995 0.83470 0.74771 0.82526 0.90159 0.87430 0.92066 0.87170 0.93222 0.98515 0.90152 0.93893 0.90652 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 14.32 67.78 0.97 0.22 16 2 C -0.20 -1.48 9.72 25.64 0.25 -1.23 16 3 C 0.14 0.77 6.98 85.63 0.60 1.37 16 4 N -0.34 -5.05 3.68 -350.83 -1.29 -6.34 16 5 C 0.11 2.00 11.28 83.85 0.95 2.95 16 6 C -0.12 -3.07 6.77 40.82 0.28 -2.79 16 7 C 0.60 20.39 7.69 86.69 0.67 21.06 16 8 O -0.57 -23.01 16.29 -4.03 -0.07 -23.07 16 9 N -0.60 -20.70 2.98 -822.38 -2.45 -23.15 16 10 C 0.08 2.15 6.27 86.44 0.54 2.69 16 11 C -0.11 -3.29 5.82 30.65 0.18 -3.11 16 12 C 0.08 3.07 2.48 30.66 0.08 3.14 16 13 H 0.06 2.12 8.13 -2.38 -0.02 2.10 16 14 O -0.39 -15.74 10.49 -148.98 -1.56 -17.30 16 15 C 0.05 2.10 6.95 72.05 0.50 2.60 16 16 C 0.14 6.83 5.68 86.28 0.49 7.32 16 17 N -0.60 -31.56 3.07 -673.90 -2.07 -33.63 16 18 C -0.26 -14.67 9.02 84.04 0.76 -13.91 16 19 H 0.08 4.41 6.12 -2.91 -0.02 4.40 16 20 C -0.05 -2.72 4.74 84.86 0.40 -2.32 16 21 N -0.93 -55.38 11.25 21.65 0.24 -55.13 16 22 Si 0.96 45.36 29.65 68.60 2.03 47.39 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 C 0.14 6.17 3.03 45.05 0.14 6.31 16 27 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 28 C 0.14 5.75 4.41 86.25 0.38 6.13 16 29 N -0.22 -5.55 8.62 -50.00 -0.43 -5.98 16 30 N -0.07 -1.60 13.63 37.02 0.50 -1.10 16 31 H 0.12 0.28 7.84 -2.91 -0.02 0.26 16 32 H 0.11 0.51 8.06 -2.91 -0.02 0.48 16 33 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.12 0.26 7.79 -2.39 -0.02 0.25 16 35 H 0.15 -0.13 8.08 -2.38 -0.02 -0.15 16 36 H 0.24 2.54 8.06 -2.91 -0.02 2.51 16 37 H 0.16 4.17 3.61 -107.29 -0.39 3.78 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 42 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 43 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.08 4.39 5.75 -2.39 -0.01 4.38 16 45 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 46 H 0.08 3.12 7.52 -2.39 -0.02 3.11 16 47 H 0.07 3.35 6.66 -2.39 -0.02 3.34 16 Total: -1.00 -76.54 377.10 2.69 -73.86 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.61 Total: 14.06 kcal Atomic # 6 Polarization: 23.23 SS G_CDS: 7.17 Total: 30.40 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -5.50 Total: -125.33 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.63 Total: -40.38 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -76.54 2.69 -73.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074352992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.633 kcal (2) G-P(sol) polarization free energy of solvation -76.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds