Wall clock time and date at job start Wed Apr 1 2020 04:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50707 * 120.00178 * 2 1 4 4 C 1.53005 * 109.46923 * 125.00015 * 3 2 1 5 5 N 1.46496 * 109.46872 * 180.02562 * 4 3 2 6 6 C 1.34812 * 126.59772 * 124.95226 * 5 4 3 7 7 C 1.36587 * 106.84470 * 180.02562 * 6 5 4 8 8 C 1.47528 * 125.77304 * 180.26277 * 7 6 5 9 9 O 1.21592 * 119.99899 * 353.35310 * 8 7 6 10 10 N 1.34778 * 120.00124 * 173.34729 * 8 7 6 11 11 C 1.44969 * 117.32221 * 3.74633 * 10 8 7 12 12 C 1.51776 * 111.99619 * 203.54039 * 11 10 8 13 13 O 1.41316 * 111.63606 * 319.67674 * 12 11 10 14 14 C 1.40785 * 118.40794 * 56.76177 * 13 12 11 15 15 H 1.08993 * 109.35051 * 188.31520 * 14 13 12 16 16 C 1.54198 * 110.22488 * 67.70290 * 14 13 12 17 17 N 1.46879 * 106.39818 * 210.33871 * 16 14 13 18 18 C 1.36929 * 125.36972 * 197.82293 * 17 16 14 19 19 H 1.08001 * 120.00381 * 180.02562 * 18 17 16 20 20 C 1.38819 * 119.99777 * 0.02562 * 18 17 16 21 21 N 1.31623 * 120.00073 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99839 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46991 * 60.00241 * 22 20 18 24 24 H 1.48505 * 109.46855 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47365 * 299.99892 * 22 20 18 26 26 C 1.46790 * 109.26293 * 17.84551 * 17 16 14 27 27 C 1.44535 * 117.32511 * 184.00613 * 10 8 7 28 28 H 1.08995 * 109.48705 * 285.85563 * 27 10 8 29 29 N 1.34400 * 108.45789 * 0.02562 * 7 6 5 30 30 N 1.28757 * 109.52478 * 359.97438 * 29 7 6 31 31 H 1.07999 * 120.00377 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.00078 * 359.97438 * 1 2 3 33 33 H 1.08003 * 120.00078 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.46605 * 5.00202 * 3 2 1 35 35 H 1.08993 * 109.47116 * 245.00186 * 3 2 1 36 36 H 1.09001 * 109.47079 * 60.00171 * 4 3 2 37 37 H 1.08996 * 109.47111 * 300.00469 * 4 3 2 38 38 H 1.08002 * 126.57456 * 0.02562 * 6 5 4 39 39 H 1.09004 * 108.99946 * 324.33351 * 11 10 8 40 40 H 1.09000 * 108.99584 * 83.09157 * 11 10 8 41 41 H 1.08993 * 109.15274 * 199.02093 * 12 11 10 42 42 H 1.09006 * 108.82000 * 80.10223 * 12 11 10 43 43 H 1.09007 * 110.07010 * 91.10936 * 16 14 13 44 44 H 1.09000 * 110.11995 * 329.60040 * 16 14 13 45 45 H 0.96992 * 119.99851 * 179.97438 * 21 20 18 46 46 H 1.09008 * 109.82364 * 239.35485 * 26 17 16 47 47 H 1.09000 * 109.82658 * 118.39680 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 7 3.7671 2.6020 1.1820 6 6 3.8474 3.4833 2.1990 7 6 4.6264 4.5181 1.7654 8 6 4.9905 5.7119 2.5520 9 8 4.4921 5.8944 3.6459 10 7 5.8758 6.6001 2.0581 11 6 6.3709 6.3696 0.7153 12 6 7.7143 7.0365 0.4825 13 8 7.7691 8.3185 1.0744 14 6 7.5193 8.4299 2.4554 15 1 7.4529 9.4834 2.7266 16 6 8.6520 7.7583 3.2578 17 7 8.0423 7.2588 4.4972 18 6 8.7249 6.9108 5.6321 19 1 8.1871 6.5518 6.4971 20 6 10.1083 7.0194 5.6707 21 7 10.7637 7.4574 4.6167 22 14 11.0395 6.5453 7.2191 23 1 10.7829 5.1168 7.5332 24 1 12.4944 6.7508 7.0042 25 1 10.5815 7.3910 8.3507 26 6 6.5858 7.1909 4.3273 27 6 6.2579 7.7012 2.9129 28 1 5.4407 8.4204 2.9666 29 7 5.0094 4.2624 0.5028 30 7 4.5183 3.1339 0.1243 31 1 -0.5401 -0.9353 0.0004 32 1 -0.5400 0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3586 2.1316 0.0896 35 1 2.6212 1.4026 -0.9313 36 1 3.7400 0.5065 1.0921 37 1 2.4773 1.2355 2.1130 38 1 3.3845 3.3891 3.1703 39 1 6.4732 5.2964 0.5541 40 1 5.6522 6.7675 -0.0011 41 1 7.8853 7.1316 -0.5897 42 1 8.4965 6.4116 0.9136 43 1 9.4286 8.4870 3.4903 44 1 9.0747 6.9303 2.6887 45 1 11.7303 7.5336 4.6438 46 1 6.0972 7.8214 5.0703 47 1 6.2485 6.1601 4.4360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083219961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:36 Heat of formation + Delta-G solvation = 106.510321 kcal Electronic energy + Delta-G solvation = -31229.920086 eV Core-core repulsion = 27032.151597 eV Total energy + Delta-G solvation = -4197.768489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.41984 -40.48879 -38.21222 -36.84298 -35.82196 -34.87548 -33.98334 -32.36487 -31.12538 -29.98340 -29.69291 -27.86337 -27.27053 -25.08510 -24.74320 -23.40040 -23.13105 -21.97146 -20.95196 -20.42605 -19.84160 -18.68194 -17.70194 -17.15210 -16.68336 -16.48640 -16.35026 -15.88733 -15.48299 -15.16490 -15.08571 -14.58480 -14.46695 -14.30757 -14.18510 -13.81717 -13.51206 -13.30278 -13.18501 -12.81571 -12.47833 -12.35421 -12.10651 -12.01773 -11.91026 -11.70585 -11.66871 -11.04185 -10.84686 -10.75718 -10.65289 -10.50057 -10.37755 -10.27185 -10.06021 -9.95543 -9.69697 -9.55336 -9.31935 -8.91124 -8.56739 -8.13756 -6.76711 -5.63102 -3.01730 0.98087 1.58718 1.67856 1.88321 3.07268 3.39591 3.43801 3.47482 3.49191 3.93709 4.04728 4.17946 4.27090 4.38870 4.51305 4.55997 4.63429 4.71480 4.81502 4.98309 5.03870 5.18867 5.24186 5.35488 5.38524 5.40645 5.49449 5.55776 5.63530 5.68236 5.80206 5.90852 6.02348 6.09860 6.12333 6.15573 6.18234 6.24481 6.34453 6.64846 6.84391 7.17021 7.44219 7.48495 7.65855 7.78332 7.81995 7.99265 8.31847 8.38666 9.26403 9.86829 10.49974 11.43480 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.002688 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.183276 B =10412.477077 C =11391.780657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C -0.106 4.106 4 C 0.126 3.874 5 N -0.362 5.362 6 C 0.094 3.906 7 C -0.092 4.092 8 C 0.593 3.407 9 O -0.528 6.528 10 N -0.570 5.570 11 C 0.068 3.932 12 C 0.058 3.942 13 O -0.372 6.372 14 C 0.069 3.931 15 H 0.113 0.887 16 C 0.140 3.860 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.923 5.923 22 Si 0.915 3.085 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.130 3.870 27 C 0.111 3.889 28 H 0.073 0.927 29 N -0.203 5.203 30 N -0.070 5.070 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.205 0.795 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.022 0.978 45 H 0.253 0.747 46 H 0.035 0.965 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.428 -12.144 -11.346 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.177 4.177 3 C -0.144 4.144 4 C 0.005 3.995 5 N -0.147 5.147 6 C -0.062 4.062 7 C -0.231 4.231 8 C 0.379 3.621 9 O -0.404 6.404 10 N -0.302 5.302 11 C -0.055 4.055 12 C -0.020 4.020 13 O -0.289 6.289 14 C 0.010 3.990 15 H 0.131 0.869 16 C 0.015 3.985 17 N -0.331 5.331 18 C -0.349 4.349 19 H 0.096 0.904 20 C -0.207 4.207 21 N -0.572 5.572 22 Si 0.745 3.255 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.004 3.996 27 C 0.007 3.993 28 H 0.091 0.909 29 N -0.077 5.077 30 N -0.050 5.050 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.222 0.778 39 H 0.133 0.867 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.040 0.960 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.936 -12.099 -12.255 24.865 hybrid contribution 0.044 -0.662 1.856 1.971 sum -17.892 -12.761 -10.398 24.313 Atomic orbital electron populations 1.23962 0.95891 1.02307 0.99570 1.22746 0.96017 0.97680 1.01272 1.21027 0.97995 0.96741 0.98645 1.22027 0.94475 0.81470 1.01514 1.50498 1.35900 1.17344 1.10934 1.23360 0.98344 0.89208 0.95328 1.21536 1.07749 1.00376 0.93391 1.16876 0.79700 0.80958 0.84559 1.90796 1.53961 1.75763 1.19884 1.46549 1.42481 1.25609 1.15574 1.22195 0.96980 1.03936 0.82438 1.22258 0.95454 0.85637 0.98629 1.86834 1.90783 1.28654 1.22584 1.23047 0.94234 1.00593 0.81151 0.86897 1.22064 0.92906 0.97907 0.85670 1.44257 0.99838 1.77029 1.11990 1.19017 0.89118 1.36415 0.90346 0.90406 1.24804 0.96259 1.01824 0.97815 1.69861 1.06975 1.52400 1.27941 0.86150 0.78843 0.78175 0.82315 1.21327 1.21613 1.21098 1.21664 0.86406 1.00150 0.91391 1.21612 0.98146 0.87885 0.91674 0.90876 1.74736 1.14813 1.07526 1.10597 1.81957 1.08920 1.05575 1.08527 0.88009 0.88384 0.86682 0.90557 0.89005 0.88114 0.87537 0.77843 0.86724 0.91693 0.87923 0.92568 0.88345 0.96014 0.93687 0.94670 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.76 14.32 29.02 0.42 -0.34 16 2 C -0.16 -0.67 9.52 -36.02 -0.34 -1.01 16 3 C -0.11 -0.55 5.86 -27.88 -0.16 -0.72 16 4 C 0.13 0.67 6.52 -4.04 -0.03 0.64 16 5 N -0.36 -3.48 3.69 -61.06 -0.23 -3.71 16 6 C 0.09 1.04 11.28 -16.84 -0.19 0.85 16 7 C -0.09 -1.35 6.63 -83.55 -0.55 -1.90 16 8 C 0.59 10.55 6.86 -12.47 -0.09 10.46 16 9 O -0.53 -10.35 14.28 5.28 0.08 -10.27 16 10 N -0.57 -10.39 3.09 -170.35 -0.53 -10.91 16 11 C 0.07 1.08 5.36 -5.48 -0.03 1.05 16 12 C 0.06 0.94 6.73 36.54 0.25 1.19 16 13 O -0.37 -7.05 10.25 -34.35 -0.35 -7.40 16 14 C 0.07 1.41 3.91 -26.26 -0.10 1.31 16 15 H 0.11 2.16 8.14 -51.93 -0.42 1.74 16 16 C 0.14 3.52 5.26 -3.21 -0.02 3.50 16 17 N -0.60 -16.12 3.39 -171.40 -0.58 -16.70 16 18 C -0.22 -6.35 10.25 -15.06 -0.15 -6.51 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.33 5.48 -17.43 -0.10 -0.43 16 21 N -0.92 -27.48 10.18 55.49 0.56 -26.91 16 22 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.13 3.00 6.06 -3.42 -0.02 2.98 16 27 C 0.11 2.20 3.28 -68.67 -0.23 1.97 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 N -0.20 -2.92 8.57 32.85 0.28 -2.64 16 30 N -0.07 -0.89 13.65 60.35 0.82 -0.06 16 31 H 0.10 0.33 8.06 -52.49 -0.42 -0.09 16 32 H 0.10 0.40 7.84 -52.48 -0.41 -0.01 16 33 H 0.12 0.37 8.06 -52.48 -0.42 -0.05 16 34 H 0.08 0.44 7.79 -51.93 -0.40 0.03 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.11 0.33 8.08 -51.93 -0.42 -0.09 16 38 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.12 1.81 4.88 -53.74 -0.26 1.54 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.06 1.03 6.73 -51.93 -0.35 0.68 16 43 H 0.10 2.76 6.25 -51.93 -0.32 2.44 16 44 H 0.02 0.60 6.48 -51.93 -0.34 0.26 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 47 H 0.05 1.25 5.43 -51.93 -0.28 0.96 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -34.70 376.09 -7.21 -41.90 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.56 Total: 0.42 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: -1.35 Total: 13.06 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.34 Total: -60.94 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.28 Total: -17.67 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.70 -7.21 -41.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083219961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.413 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds