Wall clock time and date at job start Wed Apr 1 2020 04:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50707 * 120.00178 * 2 1 4 4 C 1.53005 * 109.46923 * 125.00015 * 3 2 1 5 5 N 1.46496 * 109.46872 * 180.02562 * 4 3 2 6 6 C 1.34812 * 126.59772 * 124.95226 * 5 4 3 7 7 C 1.36587 * 106.84470 * 180.02562 * 6 5 4 8 8 C 1.47528 * 125.77304 * 180.26277 * 7 6 5 9 9 O 1.21592 * 119.99899 * 353.35310 * 8 7 6 10 10 N 1.34778 * 120.00124 * 173.34729 * 8 7 6 11 11 C 1.44969 * 117.32221 * 3.74633 * 10 8 7 12 12 C 1.51776 * 111.99619 * 203.54039 * 11 10 8 13 13 O 1.41316 * 111.63606 * 319.67674 * 12 11 10 14 14 C 1.40785 * 118.40794 * 56.76177 * 13 12 11 15 15 H 1.08993 * 109.35051 * 188.31520 * 14 13 12 16 16 C 1.54198 * 110.22488 * 67.70290 * 14 13 12 17 17 N 1.46879 * 106.39818 * 210.33871 * 16 14 13 18 18 C 1.36929 * 125.36972 * 197.82293 * 17 16 14 19 19 H 1.08001 * 120.00381 * 180.02562 * 18 17 16 20 20 C 1.38819 * 119.99777 * 0.02562 * 18 17 16 21 21 N 1.31623 * 120.00073 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99839 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46991 * 60.00241 * 22 20 18 24 24 H 1.48505 * 109.46855 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47365 * 299.99892 * 22 20 18 26 26 C 1.46790 * 109.26293 * 17.84551 * 17 16 14 27 27 C 1.44535 * 117.32511 * 184.00613 * 10 8 7 28 28 H 1.08995 * 109.48705 * 285.85563 * 27 10 8 29 29 N 1.34400 * 108.45789 * 0.02562 * 7 6 5 30 30 N 1.28757 * 109.52478 * 359.97438 * 29 7 6 31 31 H 1.07999 * 120.00377 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.00078 * 359.97438 * 1 2 3 33 33 H 1.08003 * 120.00078 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.46605 * 5.00202 * 3 2 1 35 35 H 1.08993 * 109.47116 * 245.00186 * 3 2 1 36 36 H 1.09001 * 109.47079 * 60.00171 * 4 3 2 37 37 H 1.08996 * 109.47111 * 300.00469 * 4 3 2 38 38 H 1.08002 * 126.57456 * 0.02562 * 6 5 4 39 39 H 1.09004 * 108.99946 * 324.33351 * 11 10 8 40 40 H 1.09000 * 108.99584 * 83.09157 * 11 10 8 41 41 H 1.08993 * 109.15274 * 199.02093 * 12 11 10 42 42 H 1.09006 * 108.82000 * 80.10223 * 12 11 10 43 43 H 1.09007 * 110.07010 * 91.10936 * 16 14 13 44 44 H 1.09000 * 110.11995 * 329.60040 * 16 14 13 45 45 H 0.96992 * 119.99851 * 179.97438 * 21 20 18 46 46 H 1.09008 * 109.82364 * 239.35485 * 26 17 16 47 47 H 1.09000 * 109.82658 * 118.39680 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 7 3.7671 2.6020 1.1820 6 6 3.8474 3.4833 2.1990 7 6 4.6264 4.5181 1.7654 8 6 4.9905 5.7119 2.5520 9 8 4.4921 5.8944 3.6459 10 7 5.8758 6.6001 2.0581 11 6 6.3709 6.3696 0.7153 12 6 7.7143 7.0365 0.4825 13 8 7.7691 8.3185 1.0744 14 6 7.5193 8.4299 2.4554 15 1 7.4529 9.4834 2.7266 16 6 8.6520 7.7583 3.2578 17 7 8.0423 7.2588 4.4972 18 6 8.7249 6.9108 5.6321 19 1 8.1871 6.5518 6.4971 20 6 10.1083 7.0194 5.6707 21 7 10.7637 7.4574 4.6167 22 14 11.0395 6.5453 7.2191 23 1 10.7829 5.1168 7.5332 24 1 12.4944 6.7508 7.0042 25 1 10.5815 7.3910 8.3507 26 6 6.5858 7.1909 4.3273 27 6 6.2579 7.7012 2.9129 28 1 5.4407 8.4204 2.9666 29 7 5.0094 4.2624 0.5028 30 7 4.5183 3.1339 0.1243 31 1 -0.5401 -0.9353 0.0004 32 1 -0.5400 0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3586 2.1316 0.0896 35 1 2.6212 1.4026 -0.9313 36 1 3.7400 0.5065 1.0921 37 1 2.4773 1.2355 2.1130 38 1 3.3845 3.3891 3.1703 39 1 6.4732 5.2964 0.5541 40 1 5.6522 6.7675 -0.0011 41 1 7.8853 7.1316 -0.5897 42 1 8.4965 6.4116 0.9136 43 1 9.4286 8.4870 3.4903 44 1 9.0747 6.9303 2.6887 45 1 11.7303 7.5336 4.6438 46 1 6.0972 7.8214 5.0703 47 1 6.2485 6.1601 4.4360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083219961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:35 Heat of formation + Delta-G solvation = 82.369523 kcal Electronic energy + Delta-G solvation = -31230.966909 eV Core-core repulsion = 27032.151597 eV Total energy + Delta-G solvation = -4198.815313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.39248 -41.95135 -39.67462 -37.70392 -37.31596 -36.22899 -34.76218 -34.25587 -32.15726 -31.67609 -30.40912 -29.57691 -28.92544 -26.66524 -25.72966 -24.69872 -24.55886 -22.83499 -22.52667 -21.35377 -20.75241 -20.14200 -19.12789 -18.73092 -18.26945 -17.57487 -17.38302 -16.90627 -16.67047 -16.44398 -16.34816 -16.06624 -15.73204 -15.53643 -15.46529 -15.08129 -14.94669 -14.53897 -14.08781 -13.98032 -13.87721 -13.76850 -13.58056 -13.33077 -13.04630 -12.91510 -12.78028 -12.54039 -12.29906 -12.17776 -12.11488 -12.06379 -12.02248 -11.83876 -11.55695 -11.31716 -11.04871 -10.74564 -10.48355 -10.38920 -10.26126 -9.58915 -8.91307 -7.82350 -5.24977 0.10289 0.55561 1.00564 1.41083 1.44384 1.48396 1.54923 1.74043 2.13843 2.47062 2.74012 3.04259 3.27409 3.30431 3.45215 3.69882 3.74202 3.78774 3.81662 3.91893 3.96117 4.02586 4.11763 4.19539 4.22258 4.35473 4.37478 4.38480 4.41586 4.50387 4.64266 4.78178 4.87261 4.94078 4.98669 5.01336 5.04745 5.07812 5.38919 5.41693 5.48787 5.59530 5.68713 5.73079 5.83117 6.12397 6.20921 6.39935 6.79382 7.02141 7.08105 7.73161 8.35125 9.22009 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.002688 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.183276 B =10412.477077 C =11391.780657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.159 4.159 3 C -0.100 4.100 4 C 0.117 3.883 5 N -0.346 5.346 6 C 0.113 3.887 7 C -0.123 4.123 8 C 0.591 3.409 9 O -0.554 6.554 10 N -0.581 5.581 11 C 0.074 3.926 12 C 0.054 3.946 13 O -0.372 6.372 14 C 0.084 3.916 15 H 0.129 0.871 16 C 0.151 3.849 17 N -0.621 5.621 18 C -0.243 4.243 19 H 0.079 0.921 20 C -0.065 4.065 21 N -0.948 5.948 22 Si 0.983 3.017 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.274 1.274 26 C 0.132 3.868 27 C 0.121 3.879 28 H 0.093 0.907 29 N -0.218 5.218 30 N -0.082 5.082 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.235 0.765 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.143 0.857 42 H 0.029 0.971 43 H 0.065 0.935 44 H -0.009 1.009 45 H 0.249 0.751 46 H 0.035 0.965 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.128 -13.623 -11.589 26.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.178 4.178 3 C -0.138 4.138 4 C -0.002 4.002 5 N -0.130 5.130 6 C -0.045 4.045 7 C -0.262 4.262 8 C 0.378 3.622 9 O -0.432 6.432 10 N -0.313 5.313 11 C -0.049 4.049 12 C -0.023 4.023 13 O -0.289 6.289 14 C 0.024 3.976 15 H 0.146 0.854 16 C 0.026 3.974 17 N -0.349 5.349 18 C -0.371 4.371 19 H 0.097 0.903 20 C -0.257 4.257 21 N -0.597 5.597 22 Si 0.811 3.189 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.200 1.200 26 C 0.007 3.993 27 C 0.016 3.984 28 H 0.111 0.889 29 N -0.092 5.092 30 N -0.062 5.062 31 H 0.129 0.871 32 H 0.114 0.886 33 H 0.145 0.855 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.251 0.749 39 H 0.135 0.865 40 H 0.102 0.898 41 H 0.160 0.840 42 H 0.048 0.952 43 H 0.083 0.917 44 H 0.009 0.991 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -19.671 -13.610 -12.538 27.007 hybrid contribution 0.494 -0.346 1.887 1.981 sum -19.178 -13.956 -10.651 25.999 Atomic orbital electron populations 1.24099 0.96054 1.02745 0.99233 1.22762 0.95994 0.97535 1.01498 1.20944 0.97699 0.97222 0.97983 1.22515 0.94798 0.79796 1.03090 1.50780 1.34663 1.17930 1.09655 1.23760 0.96522 0.87935 0.96237 1.21294 1.10311 1.00658 0.93974 1.17252 0.78997 0.81441 0.84490 1.90764 1.54930 1.76469 1.21029 1.46673 1.42846 1.25538 1.16210 1.22268 0.96767 1.04202 0.81668 1.22518 0.95141 0.84269 1.00378 1.86842 1.90726 1.30027 1.21319 1.22799 0.92476 1.00879 0.81443 0.85395 1.21782 0.93952 0.96089 0.85597 1.44522 1.01473 1.76984 1.11913 1.19366 0.89834 1.36684 0.91256 0.90319 1.25684 0.97056 1.01976 1.01020 1.70112 1.06764 1.53101 1.29765 0.85085 0.77041 0.78071 0.78713 1.20606 1.21704 1.19952 1.21694 0.84377 0.99519 0.93735 1.21397 0.98261 0.88688 0.90043 0.88924 1.74657 1.15506 1.08379 1.10640 1.81876 1.09499 1.05220 1.09605 0.87060 0.88606 0.85455 0.91189 0.90322 0.86536 0.84481 0.74922 0.86469 0.89765 0.83961 0.95214 0.91671 0.99138 0.94199 0.94732 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 14.32 67.79 0.97 -0.20 16 2 C -0.16 -0.97 9.52 25.66 0.24 -0.72 16 3 C -0.10 -0.84 5.86 29.85 0.17 -0.66 16 4 C 0.12 0.89 6.52 86.38 0.56 1.45 16 5 N -0.35 -5.86 3.69 -347.11 -1.28 -7.14 16 6 C 0.11 2.25 11.28 83.85 0.95 3.20 16 7 C -0.12 -3.50 6.63 40.82 0.27 -3.23 16 8 C 0.59 20.76 6.86 86.69 0.59 21.36 16 9 O -0.55 -21.58 14.28 -4.01 -0.06 -21.64 16 10 N -0.58 -20.93 3.09 -811.12 -2.51 -23.44 16 11 C 0.07 2.28 5.36 86.26 0.46 2.74 16 12 C 0.05 1.73 6.73 71.58 0.48 2.21 16 13 O -0.37 -13.91 10.25 -145.84 -1.49 -15.41 16 14 C 0.08 3.43 3.91 30.90 0.12 3.55 16 15 H 0.13 4.84 8.14 -2.39 -0.02 4.82 16 16 C 0.15 7.91 5.26 86.71 0.46 8.37 16 17 N -0.62 -34.18 3.39 -696.19 -2.36 -36.54 16 18 C -0.24 -14.30 10.25 84.04 0.86 -13.44 16 19 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 20 C -0.06 -3.79 5.48 84.86 0.47 -3.32 16 21 N -0.95 -58.21 10.18 21.65 0.22 -57.99 16 22 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 26 C 0.13 6.21 6.06 86.63 0.52 6.73 16 27 C 0.12 4.76 3.28 45.56 0.15 4.91 16 28 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 29 N -0.22 -6.06 8.57 -50.00 -0.43 -6.49 16 30 N -0.08 -1.96 13.65 37.02 0.51 -1.45 16 31 H 0.11 0.49 8.06 -2.91 -0.02 0.47 16 32 H 0.10 0.64 7.84 -2.91 -0.02 0.61 16 33 H 0.13 0.47 8.06 -2.91 -0.02 0.44 16 34 H 0.07 0.68 7.79 -2.39 -0.02 0.66 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.14 0.28 8.08 -2.39 -0.02 0.26 16 38 H 0.23 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.12 3.64 4.88 -4.73 -0.02 3.62 16 40 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.14 3.42 8.14 -2.39 -0.02 3.40 16 42 H 0.03 1.12 6.73 -2.38 -0.02 1.10 16 43 H 0.07 3.83 6.25 -2.38 -0.01 3.81 16 44 H -0.01 -0.53 6.48 -2.39 -0.02 -0.55 16 45 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 46 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.04 1.90 5.43 -2.39 -0.01 1.88 16 Total: -1.00 -77.57 376.09 2.89 -74.68 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.98 Total: 13.45 kcal Atomic # 6 Polarization: 25.66 SS G_CDS: 7.29 Total: 32.95 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -5.85 Total: -133.05 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.55 Total: -37.04 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -77.57 2.89 -74.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083219961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.051 kcal (2) G-P(sol) polarization free energy of solvation -77.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds