Wall clock time and date at job start Wed Apr 1 2020 04:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30861 * 125.41816 * 2 1 4 4 C 1.33316 * 109.68416 * 180.19790 * 3 2 1 5 5 C 1.36664 * 107.78765 * 359.55455 * 4 3 2 6 6 C 1.46763 * 126.84784 * 180.28705 * 5 4 3 7 7 O 1.21683 * 119.99702 * 354.89404 * 6 5 4 8 8 N 1.34779 * 120.00240 * 174.89102 * 6 5 4 9 9 C 1.46499 * 120.00111 * 184.90172 * 8 6 5 10 10 H 1.09004 * 110.54603 * 46.39789 * 9 8 6 11 11 C 1.54832 * 110.61374 * 283.53822 * 9 8 6 12 12 C 1.55845 * 103.51924 * 241.49161 * 11 9 8 13 13 H 1.08998 * 115.58718 * 158.88876 * 12 11 9 14 14 C 1.55849 * 105.03428 * 287.51572 * 12 11 9 15 15 C 1.56683 * 102.66582 * 72.20624 * 14 12 11 16 16 C 1.55842 * 103.67457 * 359.66383 * 15 14 12 17 17 H 1.08997 * 116.14970 * 159.46019 * 16 15 14 18 18 N 1.50648 * 101.03060 * 33.22538 * 16 15 14 19 19 C 1.46900 * 111.00161 * 189.76179 * 18 16 15 20 20 C 1.50703 * 109.47156 * 294.55939 * 19 18 16 21 21 O 1.21295 * 119.99674 * 1.76218 * 20 19 18 22 22 N 1.34770 * 120.00194 * 181.75494 * 20 19 18 23 23 C 1.37095 * 120.00099 * 184.78231 * 22 20 19 24 24 H 1.08006 * 120.00078 * 5.26097 * 23 22 20 25 25 C 1.38954 * 120.00181 * 185.26154 * 23 22 20 26 26 N 1.31406 * 119.99706 * 5.17347 * 25 23 22 27 27 Si 1.86800 * 119.99881 * 185.17803 * 25 23 22 28 28 H 1.48502 * 109.47482 * 5.00241 * 27 25 23 29 29 H 1.48497 * 109.47224 * 125.00459 * 27 25 23 30 30 H 1.48503 * 109.46961 * 245.00168 * 27 25 23 31 31 N 1.34493 * 125.41971 * 179.70582 * 2 1 3 32 32 H 0.96998 * 126.47327 * 0.02562 * 31 2 1 33 33 H 1.08999 * 109.47541 * 275.28381 * 1 2 3 34 34 H 1.09005 * 109.46838 * 35.28629 * 1 2 3 35 35 H 1.08997 * 109.47407 * 155.28353 * 1 2 3 36 36 H 1.08004 * 126.10807 * 179.81906 * 4 3 2 37 37 H 0.96995 * 119.99332 * 4.90529 * 8 6 5 38 38 H 1.09003 * 110.61739 * 359.97438 * 11 9 8 39 39 H 1.08998 * 110.61460 * 122.98133 * 11 9 8 40 40 H 1.08999 * 110.61750 * 190.23623 * 14 12 11 41 41 H 1.08998 * 110.60798 * 313.22062 * 14 12 11 42 42 H 1.08997 * 110.33442 * 241.19868 * 15 14 12 43 43 H 1.08998 * 110.73394 * 118.32222 * 15 14 12 44 44 H 1.09000 * 109.47213 * 54.56020 * 19 18 16 45 45 H 1.09006 * 109.47265 * 174.56382 * 19 18 16 46 46 H 0.96997 * 119.99745 * 4.78522 * 22 20 19 47 47 H 0.97003 * 120.00011 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7049 -0.0043 5 6 3.5975 -0.6608 0.0029 6 6 4.8028 -1.4982 0.0075 7 8 5.9013 -0.9839 -0.0890 8 7 4.6929 -2.8369 0.1185 9 6 5.8969 -3.6639 0.2311 10 1 6.5861 -3.2388 0.9609 11 6 6.5864 -3.8135 -1.1471 12 6 6.5371 -5.3480 -1.4145 13 1 6.6361 -5.6474 -2.4579 14 6 7.5828 -5.9627 -0.4360 15 6 6.8790 -5.8150 0.9561 16 6 5.5231 -5.1281 0.6123 17 1 4.7298 -5.2338 1.3523 18 7 5.2383 -5.7156 -0.7453 19 6 4.1050 -5.0353 -1.3862 20 6 2.8489 -5.2993 -0.5966 21 8 2.8989 -5.9600 0.4194 22 7 1.6700 -4.8012 -1.0192 23 6 0.5451 -4.9574 -0.2513 24 1 0.6184 -5.4037 0.7295 25 6 -0.6894 -4.5416 -0.7349 26 7 -0.7958 -4.0928 -1.9653 27 14 -2.1978 -4.6204 0.3643 28 1 -1.7941 -5.0439 1.7292 29 1 -2.8332 -3.2799 0.4297 30 1 -3.1651 -5.6001 -0.1922 31 7 2.2864 -1.0960 0.0056 32 1 1.9850 -2.0179 0.0100 33 1 -0.3634 0.0946 1.0233 34 1 -0.3633 0.8389 -0.5937 35 1 -0.3634 -0.9335 -0.4297 36 1 4.3978 1.3722 -0.0081 37 1 3.8166 -3.2527 0.1237 38 1 6.0322 -3.2727 -1.9142 39 1 7.6181 -3.4651 -1.0998 40 1 7.7553 -7.0134 -0.6691 41 1 8.5171 -5.4024 -0.4714 42 1 7.4732 -5.1827 1.6157 43 1 6.7104 -6.7921 1.4088 44 1 4.2957 -3.9626 -1.4176 45 1 3.9818 -5.4124 -2.4015 46 1 1.6176 -4.3322 -1.8666 47 1 -1.6575 -3.8021 -2.3028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110385188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:45 Heat of formation + Delta-G solvation = 22.319804 kcal Electronic energy + Delta-G solvation = -32652.752010 eV Core-core repulsion = 28451.332746 eV Total energy + Delta-G solvation = -4201.419264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.14350 -41.31663 -38.76457 -38.08206 -34.40004 -34.23525 -32.50178 -32.03943 -31.75901 -31.37362 -29.66329 -28.90059 -27.16779 -26.55805 -24.36067 -23.36702 -21.76957 -20.86967 -20.59825 -20.14665 -19.63879 -19.32799 -18.44382 -17.98140 -16.63683 -16.49199 -15.86541 -15.79985 -15.49186 -14.99142 -14.79524 -14.52237 -14.17209 -14.08320 -13.97084 -13.77674 -13.53556 -13.17574 -12.92867 -12.56326 -12.42893 -12.28858 -12.25240 -12.04642 -11.88522 -11.66946 -11.50009 -11.35045 -11.22630 -11.03629 -10.77038 -10.55715 -10.48933 -10.46839 -10.28544 -10.07177 -9.82262 -9.75046 -9.15471 -8.69269 -8.39186 -8.28268 -8.20428 -6.66707 -4.10974 1.38170 2.87933 2.94409 2.97206 3.11031 3.14985 3.15972 3.40828 3.58491 3.79475 4.00352 4.44768 4.51713 4.62533 4.65835 4.89304 4.93863 4.97371 5.02956 5.11772 5.17196 5.29373 5.37869 5.39059 5.41673 5.52700 5.60442 5.63693 5.68136 5.76901 5.83118 5.94046 5.94404 5.97052 5.98244 6.04328 6.12348 6.15876 6.30081 6.47011 6.64007 6.75556 7.06942 7.26996 7.31014 7.42680 7.79118 8.00044 8.13037 8.32893 8.91415 9.23707 9.75545 10.48972 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008759 B = 0.005359 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.962699 B = 5223.686477 C = 7799.738576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.252 3.748 3 N -0.502 5.502 4 C 0.071 3.929 5 C -0.103 4.103 6 C 0.596 3.404 7 O -0.530 6.530 8 N -0.723 5.723 9 C 0.112 3.888 10 H 0.093 0.907 11 C -0.158 4.158 12 C 0.039 3.961 13 H 0.113 0.887 14 C -0.113 4.113 15 C -0.111 4.111 16 C 0.049 3.951 17 H 0.136 0.864 18 N -0.463 5.463 19 C -0.001 4.001 20 C 0.434 3.566 21 O -0.571 6.571 22 N -0.567 5.567 23 C -0.310 4.310 24 H 0.105 0.895 25 C 0.028 3.972 26 N -0.892 5.892 27 Si 0.921 3.079 28 H -0.268 1.268 29 H -0.278 1.278 30 H -0.279 1.279 31 N -0.543 5.543 32 H 0.430 0.570 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.181 0.819 37 H 0.403 0.597 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.391 0.609 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.235 3.334 1.076 9.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.012 4.012 3 N -0.223 5.223 4 C -0.084 4.084 5 C -0.219 4.219 6 C 0.383 3.617 7 O -0.406 6.406 8 N -0.377 5.377 9 C 0.006 3.994 10 H 0.110 0.890 11 C -0.198 4.198 12 C -0.070 4.070 13 H 0.131 0.869 14 C -0.151 4.151 15 C -0.149 4.149 16 C -0.060 4.060 17 H 0.154 0.846 18 N -0.185 5.185 19 C -0.134 4.134 20 C 0.219 3.781 21 O -0.455 6.455 22 N -0.204 5.204 23 C -0.439 4.439 24 H 0.123 0.877 25 C -0.175 4.175 26 N -0.532 5.532 27 Si 0.748 3.252 28 H -0.192 1.192 29 H -0.204 1.204 30 H -0.205 1.205 31 N -0.148 5.148 32 H 0.271 0.729 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.199 0.801 37 H 0.241 0.759 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.108 0.892 46 H 0.224 0.776 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.446 3.474 1.606 10.192 hybrid contribution -1.103 -0.414 -0.319 1.221 sum 8.343 3.060 1.287 8.979 Atomic orbital electron populations 1.20383 0.84154 1.05122 1.04153 1.23487 0.96010 0.81360 1.00377 1.70202 1.01918 1.28255 1.21910 1.22581 0.94837 0.90985 1.00033 1.21108 0.83954 0.96022 1.20813 1.16942 0.87126 0.81418 0.76217 1.90807 1.26078 1.73396 1.50330 1.46483 1.10526 1.06214 1.74474 1.22943 0.86489 0.92178 0.97780 0.88952 1.23712 1.01771 0.97574 0.96733 1.24558 0.90994 0.92648 0.98777 0.86870 1.22913 0.96611 1.01165 0.94416 1.22830 0.94135 1.01155 0.96824 1.24894 0.98249 0.88599 0.94257 0.84631 1.67506 1.00479 1.48931 1.01599 1.22575 0.92038 0.99272 0.99486 1.19851 0.84702 0.85226 0.88302 1.90529 1.86101 1.41659 1.27213 1.41997 1.06776 1.50116 1.21557 1.19769 0.84434 1.39286 1.00420 0.87742 1.25266 0.99010 0.97046 0.96188 1.69642 1.26525 1.42566 1.14440 0.85920 0.80981 0.78129 0.80168 1.19177 1.20403 1.20507 1.43452 1.05815 1.11133 1.54365 0.72889 0.89618 0.88908 0.89263 0.80146 0.75946 0.91034 0.90164 0.90982 0.91112 0.91328 0.90354 0.91225 0.89189 0.77607 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.51 36.00 0.38 -0.63 16 2 C 0.25 3.88 8.12 -155.61 -1.26 2.61 16 3 N -0.50 -8.19 11.20 -10.58 -0.12 -8.31 16 4 C 0.07 1.12 11.66 -17.48 -0.20 0.91 16 5 C -0.10 -1.66 7.07 -82.14 -0.58 -2.24 16 6 C 0.60 9.81 7.67 -12.81 -0.10 9.71 16 7 O -0.53 -9.55 16.65 5.20 0.09 -9.47 16 8 N -0.72 -11.13 3.58 -52.68 -0.19 -11.32 16 9 C 0.11 1.58 2.45 -65.45 -0.16 1.42 16 10 H 0.09 1.29 7.72 -51.93 -0.40 0.89 16 11 C -0.16 -2.02 5.16 -24.25 -0.12 -2.15 16 12 C 0.04 0.48 4.91 -62.56 -0.31 0.17 16 13 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 14 C -0.11 -1.19 6.57 -23.22 -0.15 -1.35 16 15 C -0.11 -1.31 6.48 -23.23 -0.15 -1.46 16 16 C 0.05 0.72 3.83 -62.56 -0.24 0.48 16 17 H 0.14 2.38 6.49 -51.93 -0.34 2.05 16 18 N -0.46 -7.20 5.40 -207.01 -1.12 -8.31 16 19 C 0.00 -0.02 4.85 -4.97 -0.02 -0.05 16 20 C 0.43 8.95 6.08 -10.99 -0.07 8.88 16 21 O -0.57 -13.61 13.99 5.54 0.08 -13.54 16 22 N -0.57 -12.20 5.27 -10.96 -0.06 -12.26 16 23 C -0.31 -7.39 9.66 -14.93 -0.14 -7.54 16 24 H 0.10 2.67 7.20 -52.48 -0.38 2.30 16 25 C 0.03 0.65 5.50 -17.47 -0.10 0.55 16 26 N -0.89 -21.07 13.08 55.50 0.73 -20.35 16 27 Si 0.92 18.51 29.56 -169.99 -5.02 13.49 16 28 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 29 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 30 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 31 N -0.54 -8.53 6.07 -7.02 -0.04 -8.58 16 32 H 0.43 6.95 8.33 -40.82 -0.34 6.61 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.18 2.49 8.06 -52.48 -0.42 2.07 16 37 H 0.40 6.59 4.89 -40.82 -0.20 6.39 16 38 H 0.07 1.00 7.12 -51.93 -0.37 0.63 16 39 H 0.08 0.95 7.80 -51.93 -0.41 0.54 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.63 7.81 -51.93 -0.41 0.23 16 42 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.07 1.11 3.50 -51.93 -0.18 0.92 16 45 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 46 H 0.39 8.23 7.94 -40.82 -0.32 7.91 16 47 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -28.27 376.63 -9.48 -37.76 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -6.27 Total: 25.87 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -3.23 Total: 9.34 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -0.80 Total: -69.12 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: 0.16 Total: -23.00 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.27 -9.48 -37.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110385188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.076 kcal (2) G-P(sol) polarization free energy of solvation -28.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds